TCONS_00035756 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035756
Unique NameTCONS_00035756
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035756 ID=TCONS_00035756|Name=TCONS_00035756|organism=Clytia hemisphaerica|type=transcript|length=371bp
NTAAAATCATAAAGTTAGCCAAATTTGTTTGTGCTCCAACTTTGACATCA
TGCTTCAATAACTCTCTTCAATCTCAAAACTTTCCTGACAGCTTGAAGCT
TGCAGATATAATTCCAGTCCATAAGAAAAACAGCAAACATGACAAGGATA
ATTACAGGCCCGTCAGTCTCCTCCCATCTCTGGCTAAAGTCTTtgaaaaa
cttatttcaaatcAACTCAACACCTTCTTTGAATCATTTTTCTCTAACGG
ACTCTGTGGTTTTCGTAAACAGTATAGCACNAAAGCTAAGAAATCTTTCT
TCCTCAAAAATGACCCAAAACAATCTCCCAAGGGATTTTGGGACACCTTT
AAACCTTTGTTCTCAAATAAG
Run BLAST on NCBI

protein sequence of TCONS_00035756-protein

>TCONS_00035756-protein ID=TCONS_00035756-protein|Name=TCONS_00035756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
KIIKLAKFVCAPTLTSCFNNSLQSQNFPDSLKLADIIPVHKKNSKHDKDN
YRPVSLLPSLAKVFEKLISNQLNTFFESFFSNGLCGFRKQYSXKAKKSFF
LKNDPKQSPKGFWDTFKPLFSNK
Run BLAST on NCBI

transcript from alignment at sc0001357:62861..63231

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035756 ID=TCONS_00035756|Name=TCONS_00035756|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at sc0001357:62861..63231 (Clytia hemisphaerica)
CTTATTTGAGAACAAAGGTTTAAAGGTGTCCCAAAATCCCTTGGGAGATT
GTTTTGGGTCATTTTTGAGGAAGAAAGATTTCTTAGCTTTNGTGCTATAC
TGTTTACGAAAACCACAGAGTCCGTTAGAGAAAAATGATTCAAAGAAGGT
GTTGAGTTgatttgaaataagtttttcaAAGACTTTAGCCAGAGATGGGA
GGAGACTGACGGGCCTGTAATTATCCTTGTCATGTTTGCTGTTTTTCTTA
TGGACTGGAATTATATCTGCAAGCTTCAAGCTGTCAGGAAAGTTTTGAGA
TTGAAGAGAGTTATTGAAGCATGATGTCAAAGTTGGAGCACAAACAAATT
TGGCTAACTTTATGATTTTAN

Coding sequence (CDS) from alignment at sc0001357:62861..63231

>TCONS_00035756 ID=TCONS_00035756|Name=TCONS_00035756|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0001357:62861..63231 (Clytia hemisphaerica)
CTTATTTGAGAACAAAGGTTTAAAGGTGTCCCAAAATCCCTTGGGAGATT
GTTTTGGGTCATTTTTGAGGAAGAAAGATTTCTTAGCTTTNGTGCTATAC
TGTTTACGAAAACCACAGAGTCCGTTAGAGAAAAATGATTCAAAGAAGGT
GTTGAGTTgatttgaaataagtttttcaAAGACTTTAGCCAGAGATGGGA
GGAGACTGACGGGCCTGTAATTATCCTTGTCATGTTTGCTGTTTTTCTTA
TGGACTGGAATTATATCTGCAAGCTTCAAGCTGTCAGGAAAGTTTTGAGA
TTGAAGAGAGTTATTGAAGCATGATGTCAAAGTTGGAGCACAAACAAATT
TGGCTAACTTTATGATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020973XLOC_020973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035756-exon-sc0001357-1491911889:62861..63231TCONS_00035756-exon-sc0001357-1491911889:62861..63231Clytia hemisphaericaexon
TCONS_00035756-exon-sc0001357-1510915933:62861..63231TCONS_00035756-exon-sc0001357-1510915933:62861..63231Clytia hemisphaericaexon
TCONS_00035756-exon-sc0001357-1575043694:62861..63231TCONS_00035756-exon-sc0001357-1575043694:62861..63231Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035756-proteinTCONS_00035756-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001357supercontigsc0001357:62861..63231 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.17047	1.50709	0.994836	1.64507	1.20627	0.678211	0.292239	0	0.472125	0	0.639643	0.145649	0.173197	0	0	0	0	1.01578	0.300363	0	1.25687	0	0	0	0.419694	2.13072	0.92006	0	0.851593
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035756 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top