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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035638 ID=TCONS_00035638|Name=TCONS_00035638|organism=Clytia hemisphaerica|type=transcript|length=2352bp
AAAGAAGTGACTTATTAACGCAAAAAAGACTTCAAAATGGCTGATCGAAG
ATTGGCTGCTTCTATTCATGAGAATAATTCAATAAAAGACGATGATTGCT
GTTCAAATCACTTCCGAGTAGCTACAAAGCAAGATGTCGGTTGCAGAATT
ATGGACGGCAAAAATAAGTATCAAATTAATTCCATGCGACACGTCACATA
TATGAGTGAAGGGTTCTCTGCAAGAGCTCAAAGATATGAGGGCAAGTGTT
CTTTCATTATAAGTGAAACAACTACAgctaaaaatttctttcagtCAAAG
ATTTGTGCTCGAATTTTGTTCAATTTCGAATAATTCACAACTGCTTTTGA
TAAATAACTGACGCACGACttgcaaaataattttcctataTTTCGTTTTC
CAGTGACATACGTGTCTCCACGTAAACAAAACATCCTTCAACGTTTATGG
CGAAGGTTGAAACACGACAAATTGCGAAAACTCGCCAAGAAGTTAACGAA
TGCAGAGGAGACGATTGCTATTGATCGATTGTGGTATCATAAATTGATCT
GGTGTAGAGGAGAGGCGGATCCAGACGATTTCTTGATAGAAGATTCTTTT
TCACTGCCTGCAGATGTTCGAGAAAGCGAAAGTCTCATCATTGCTGACAC
GACCTTGTTTGTTGTTGGCAAACAAATTCCcaccaatcaaaacaatgagG
AATGTGAATCATCTGAAGAAAACAACCTCCATACAAAATACTGTTCACCA
GAAATTGATTCTTCAAGACTCCGTACACCAGCCCAGATAAATAATAGTAA
TGAATTGGAAACAGTCGGGATTGGATGTGTGGTGGATTTCCCACCAGTCG
AAAATactattttcacaaaaaggagACCTCTTCCAAAAATCGCCAATAAA
GGACCACACCCTTGGTCTCATCAATTAACTGGCGGAGAAAAGGAACAACC
TGCTCCAGTTATTTCGAGACAACTCACCTCACGTCCTTtacctaagatca
aagaatgtTGTTCAAATGTCACATTGGACGAAACAAATAAAAGTTCTTTC
GACAGTGGTATAGACGAGTTCGCGGACGAAGCAAATGAGGAGATTGAACG
CGCAATGCGCGCGGCCTGTGCAAGGAACGTTCCCGCgaagaaagaaaata
agaaacgtGAAGAGTTGCTACTTTGCCAAACACCAAATTTGGAGAAAGGT
CAATCTGGTTTCTCTTGGCAATTAGATCATAAGTTGACTAGTCCCTGCAA
TAGAGCCAGCACCCCACGTCCACAACTGTCCAGCAGTACATTAAGATCAA
TGAGACGTCGTACAGCAGTAGAGATATCTCTTGGGCAACAATTGGCCAAG
AAAAAACGCGATGAACTGATCGAAGAGAGGAACGTAAAAATCAAACAGCG
TAAAGAACGCTTTCACGATTCTCAAGAAACGAAAGAACTTGATCATGaag
tacaaaaacaaaaattgatcaATGATCAACGAGAAAAAGATAGGAATCTC
AAAGAACGACTTGATATggtgaaacaaaagaaacaacaaaaaagttcaAC
TGATGTCAAACTGGCCTTGGCAAGACAAAGACGTCAACAACAAGCTAAAC
TGGAGAACCAGgGACATAAATCATCAGTCGTCAACGCCCAAGTCTCATCC
ACAAAAGCCGCTGGCTTCCGCTCAAGCgctcaaaaatcaaagaaaggCTT
TGTATCTTTCCAAGATTACGAGGATACGCCTGTCAATCTCTCACTAACTC
ACAAAGCTCAGAAAGATGACCTTTCTACCGGACACAAAAACGCCTTAGGA
TCAAACATGAAGGTCCATGCACCAGGGCCTGTAACCGCACGcctgatgaa
aatgatcacaaACCCAAAACTAAGACAAACGTCGACTGAAAAAGAAATGT
CAATCAAGAAAGCTCCATCCCTTACATCAGCTAATCGTCCAAAAATCTCA
CGAGTCGTTTCACAGGAGCGAGTTTCATCTCCAGTTCACTTAAACGCATT
CGATGAAACAGACCCCAAAACAGTTCCATCATTATTGAAAGTAACTCCTG
TTCAAAAGCGATTTCCAATTGCCATGACAATGAAGGAAGCGATTCACAAA
GCAGAGGAGGCGAGAAAGGAACGAAAACAAAGAGAGAAAGAGGAAAATGA
AGAATACTGCAAAGAGTTCGATAAAGATTGGAATGACTTTTACTCCGTTG
ATGATAAACACGACAAAATCGAAAGTCCTTCTTCAGGCTATACTCAATAT
GAATTTTAAACTCATTTAATTTTTCTACTAAAATACTTAAAAACTAATCG
AAATATTTTAACTCCTAACTATATTTATTTAACTTAATTTTAActtcttt
ta Run BLAST on NCBI protein sequence of TCONS_00035638-protein >TCONS_00035638-protein ID=TCONS_00035638-protein|Name=TCONS_00035638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MRAACARNVPAKKENKKREELLLCQTPNLEKGQSGFSWQLDHKLTSPCNR
ASTPRPQLSSSTLRSMRRRTAVEISLGQQLAKKKRDELIEERNVKIKQRK
ERFHDSQETKELDHEVQKQKLINDQREKDRNLKERLDMVKQKKQQKSSTD
VKLALARQRRQQQAKLENQGHKSSVVNAQVSSTKAAGFRSSAQKSKKGFV
SFQDYEDTPVNLSLTHKAQKDDLSTGHKNALGSNMKVHAPGPVTARLMKM
ITNPKLRQTSTEKEMSIKKAPSLTSANRPKISRVVSQERVSSPVHLNAFD
ETDPKTVPSLLKVTPVQKRFPIAMTMKEAIHKAEEARKERKQREKEENEE
YCKEFDKDWNDFYSVDDKHDKIESPSSGYTQYEF Run BLAST on NCBI transcript from alignment at sc0001342:34997..37692- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035638 ID=TCONS_00035638|Name=TCONS_00035638|organism=Clytia hemisphaerica|type=transcript|length=2696bp|location=Sequence derived from alignment at sc0001342:34997..37692- (Clytia hemisphaerica)
AAAGAAGTGACTTATTAACGCAAAAAAGACTTCAAAATGGCTGATCGAAG
ATTGGCTGCTTCTATTCATGAGAATAATTCAATAAAAGACGATGATTGCT
GTTCAAATCACTTCCGAGTAGCTACAAAGCAAGATGTCGGTTGCAGAATT
ATGGACGGCAAAAATAAGTATCAAATTAATTCCATGCGACACGTCACATA
TATGAGTGAAGGGTTCTCTGCAAGAGCTCAAAGATATGAGGGCAAGTGTT
CTTTCATTATAAGTGAAACAACTACAGCTAAAAATTTCTTTCAGTCAAAG
ATTTGTGCTCGAATTTTGTTCAATTTCGAATAATTCACAACTGCTTTTGA
TAAATAACTGACGCACGACTTGCAAAATAATTTTCCTATATTTCGTTTTC
CAGTGACATACGTGTCTCCACGTAAACAAAACATCCTTCAACGTTTATGG
CGAAGGTTGAAACACGACAAATTGCGAAAACTCGCCAAGAAGTTAACGAA
TGCAGAGGAGACGATTGCTATTGATCGATTGTGGTATCATAAATTGATCT
GGTGTAGAGGAGAGGCGGATCCAGACGATTTCTTGATAGAAGATTCTTTT
TCACTGCCTGCAGATGTTCGAGAAAGCGAAAGTCTCATCATTGGTGAGTC
TTTTACTTTTTCTCTGATTCTAATTTTTCTGTTTGTTTGTTGAACATAAA
ACAATAAAATGAAACCCGCCCAAACTGGCTTACATTTTCGCGGAATCGAT
TGGAATAGTAGAACTTCTGAGAAAATTTCAGAACATTGGGTTTTAAGAAC
TCAACTTTTCTAAATCCTTAATACTACATTGAAACTCTTATTTTAGCTGA
CACGACCTTGTTTGTTGTTGGCAAACAAATTCCCACCAATCAAAACAATG
AGGAATGTGAATCATCTGAAGAAAACAACCTCCATACAAAATACTGTTCA
CCAGAAATTGATTCTTCAAGACTCCGTACACCAGCCCAGATAAATAATAG
TAATGAATTGGAAACAGTCGGGATTGGATGTGTGGTGGATTTCCCACCAG
TCGAAAATACTATTTTCACAAAAAGGAGACCTCTTCCAAAAATCGCCAAT
AAAGGACCACACCCTTGGTCTCATCAATTAACTGGCGGAGAAAAGGAACA
ACCTGCTCCAGTTATTTCGAGACAACTCACCTCACGTCCTTTACCTAAGA
TCAAAGAATGTTGTTCAAATGTCACATTGGACGAAACAAATAAAAGTTCT
TTCGACAGTGGTATAGACGAGTTCGCGGACGAAGCAAATGAGGAGATTGA
ACGCGCAATGCGCGCGGCCTGTGCAAGGAACGTTCCCGCGAAGAAAGAAA
ATAAGAAACGTGAAGAGTTGCTACTTTGCCAAACACCAAATTTGGAGAAA
GGTCAATCTGGTTTCTCTTGGCAATTAGATCATAAGTTGACTAGTCCCTG
CAATAGAGCCAGCACCCCACGTCCACAACTGTCCAGCAGTACATTAAGAT
CAATGAGACGTCGTACAGCAGTAGAGATATCTCTTGGGCAACAATTGGCC
AAGAAAAAACGCGATGAACTGATCGAAGAGAGGAACGTAAAAATCAAACA
GCGTAAAGAACGCTTTCACGATTCTCAAGAAACGAAAGAACTTGATCATG
AAGTACAAAAACAAAAATTGATCAATGATCAACGAGAAAAAGATAGGAAT
CTCAAAGAACGACTTGATATGGTGAAACAAAAGAAACAACAAAAAAGTTC
AACTGATGTCAAACTGGCCTTGGCAAGACAAAGACGTCAACAACAAGCTA
AACTGGAGAACCAGGTAATAATTATTAATTATCTCAAAACATTGAAAAAG
TAGTCACAGGTTCCCTCCTTGAGGCCAAAGCATTGAGGCCAAATATCGAA
TGCATTCTCCTAATCTTATGTATAAACAAAAACTCATCTTCTCCTTCTTC
TTCAGGGACATAAATCATCAGTCGTCAACGCCCAAGTCTCATCCACAAAA
GCCGCTGGCTTCCGCTCAAGCGCTCAAAAATCAAAGAAAGGCTTTGTATC
TTTCCAAGATTACGAGGATACGCCTGTCAATCTCTCACTAACTCACAAAG
CTCAGAAAGATGACCTTTCTACCGGACACAAAAACGCCTTAGGATCAAAC
ATGAAGGTCCATGCACCAGGGCCTGTAACCGCACGCCTGATGAAAATGAT
CACAAACCCAAAACTAAGACAAACGTCGACTGAAAAAGAAATGTCAATCA
AGAAAGCTCCATCCCTTACATCAGCTAATCGTCCAAAAATCTCACGAGTC
GTTTCACAGGAGCGAGTTTCATCTCCAGTTCACTTAAACGCATTCGATGA
AACAGACCCCAAAACAGTTCCATCATTATTGAAAGTAACTCCTGTTCAAA
AGCGATTTCCAATTGCCATGACAATGAAGGAAGCGATTCACAAAGCAGAG
GAGGCGAGAAAGGAACGAAAACAAAGAGAGAAAGAGGAAAATGAAGAATA
CTGCAAAGAGTTCGATAAAGATTGGAATGACTTTTACTCCGTTGATGATA
AACACGACAAAATCGAAAGTCCTTCTTCAGGCTATACTCAATATGAATTT
TAAACTCATTTAATTTTTCTACTAAAATACTTAAAAACTAATCGAAATAT
TTTAACTCCTAACTATATTTATTTAACTTAATTTTAACTTCTTTTA Coding sequence (CDS) from alignment at sc0001342:34997..37692- >TCONS_00035638 ID=TCONS_00035638|Name=TCONS_00035638|organism=Clytia hemisphaerica|type=CDS|length=2310bp|location=Sequence derived from alignment at sc0001342:34997..37692- (Clytia hemisphaerica)
GGACATAAATCATCAGTCGTCAACGCCCAAGTCTCATCCACAAAAGCCGC
TGGCTTCCGCTCAAGCGCTCAAAAATCAAAGAAAGGCTTTGTATCTTTCC
AAGATTACGAGGATACGCCTGTCAATCTCTCACTAACTCACAAAGCTCAG
AAAGATGACCTTTCTACCGGACACAAAAACGCCTTAGGATCAAACATGAA
GGTCCATGCACCAGGGCCTGTAACCGCACGCCTGATGAAAATGATCACAA
ACCCAAAACTAAGACAAACGTCGACTGAAAAAGAAATGTCAATCAAGAAA
GCTCCATCCCTTACATCAGCTAATCGTCCAAAAATCTCACGAGTCGTTTC
ACAGGAGCGAGTTTCATCTCCAGTTCACTTAAACGCATTCGATGAAACAG
ACCCCAAAACAGTTCCATCATTATTGAAAGTAACTCCTGTTCAAAAGCGA
TTTCCAATTGCCATGACAATGAAGGAAGCGATTCACAAAGCAGAGGAGGC
GAGAAAGGAACGAAAACAAAGAGAGAAAGAGGAAAATGAAGAATACTGCA
AAGAGTTCGATAAAGATTGGAATGACTTTTACTCCGTTGATGATAAACAC
GACAAAATCGAAAGTCCTTCTTCAGGCTATACTCAATATGAATTTTAAAT
GCGCGCGGCCTGTGCAAGGAACGTTCCCGCGAAGAAAGAAAATAAGAAAC
GTGAAGAGTTGCTACTTTGCCAAACACCAAATTTGGAGAAAGGTCAATCT
GGTTTCTCTTGGCAATTAGATCATAAGTTGACTAGTCCCTGCAATAGAGC
CAGCACCCCACGTCCACAACTGTCCAGCAGTACATTAAGATCAATGAGAC
GTCGTACAGCAGTAGAGATATCTCTTGGGCAACAATTGGCCAAGAAAAAA
CGCGATGAACTGATCGAAGAGAGGAACGTAAAAATCAAACAGCGTAAAGA
ACGCTTTCACGATTCTCAAGAAACGAAAGAACTTGATCATGAAGTACAAA
AACAAAAATTGATCAATGATCAACGAGAAAAAGATAGGAATCTCAAAGAA
CGACTTGATATGGTGAAACAAAAGAAACAACAAAAAAGTTCAACTGATGT
CAAACTGGCCTTGGCAAGACAAAGACGTCAACAACAAGCTAAACTGGAGA
ACCAGGGACATAAATCATCAGTCGTCAACGCCCAAGTCTCATCCACAAAA
GCCGCTGGCTTCCGCTCAAGCGCTCAAAAATCAAAGAAAGGCTTTGTATC
TTTCCAAGATTACGAGGATACGCCTGTCAATCTCTCACTAACTCACAAAG
CTCAGAAAGATGACCTTTCTACCGGACACAAAAACGCCTTAGGATCAAAC
ATGAAGGTCCATGCACCAGGGCCTGTAACCGCACGCCTGATGAAAATGAT
CACAAACCCAAAACTAAGACAAACGTCGACTGAAAAAGAAATGTCAATCA
AGAAAGCTCCATCCCTTACATCAGCTAATCGTCCAAAAATCTCACGAGTC
GTTTCACAGGAGCGAGTTTCATCTCCAGTTCACTTAAACGCATTCGATGA
AACAGACCCCAAAACAGTTCCATCATTATTGAAAGTAACTCCTGTTCAAA
AGCGATTTCCAATTGCCATGACAATGAAGGAAGCGATTCACAAAGCAGAG
GAGGCGAGAAAGGAACGAAAACAAAGAGAGAAAGAGGAAAATGAAGAATA
CTGCAAAGAGTTCGATAAAGATTGGAATGACTTTTACTCCGTTGATGATA
AACACGACAAAATCGAAAGTCCTTCTTCAGGCTATACTCAATATGAATTT
TAAATGCGCGCGGCCTGTGCAAGGAACGTTCCCGCGAAGAAAGAAAATAA
GAAACGTGAAGAGTTGCTACTTTGCCAAACACCAAATTTGGAGAAAGGTC
AATCTGGTTTCTCTTGGCAATTAGATCATAAGTTGACTAGTCCCTGCAAT
AGAGCCAGCACCCCACGTCCACAACTGTCCAGCAGTACATTAAGATCAAT
GAGACGTCGTACAGCAGTAGAGATATCTCTTGGGCAACAATTGGCCAAGA
AAAAACGCGATGAACTGATCGAAGAGAGGAACGTAAAAATCAAACAGCGT
AAAGAACGCTTTCACGATTCTCAAGAAACGAAAGAACTTGATCATGAAGT
ACAAAAACAAAAATTGATCAATGATCAACGAGAAAAAGATAGGAATCTCA
AAGAACGACTTGATATGGTGAAACAAAAGAAACAACAAAAAAGTTCAACT
GATGTCAAACTGGCCTTGGCAAGACAAAGACGTCAACAACAAGCTAAACT
GGAGAACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035638-exon-sc0001342-1575043694:37050..37692 | TCONS_00035638-exon-sc0001342-1575043694:37050..37692 | Clytia hemisphaerica | exon |
| TCONS_00035638-exon-sc0001342-1575043694:35879..36846 | TCONS_00035638-exon-sc0001342-1575043694:35879..36846 | Clytia hemisphaerica | exon |
| TCONS_00035638-exon-sc0001342-1575043694:34997..35737 | TCONS_00035638-exon-sc0001342-1575043694:34997..35737 | Clytia hemisphaerica | exon |
| TCONS_00035638-exon-sc0001342-1510915933:37050..37692 | TCONS_00035638-exon-sc0001342-1510915933:37050..37692 | Clytia hemisphaerica | exon |
| TCONS_00035638-exon-sc0001342-1510915933:35879..36846 | TCONS_00035638-exon-sc0001342-1510915933:35879..36846 | Clytia hemisphaerica | exon |
| TCONS_00035638-exon-sc0001342-1510915933:34997..35737 | TCONS_00035638-exon-sc0001342-1510915933:34997..35737 | Clytia hemisphaerica | exon |
| TCONS_00035638-exon-sc0001342-1491911889:37050..37692 | TCONS_00035638-exon-sc0001342-1491911889:37050..37692 | Clytia hemisphaerica | exon |
| TCONS_00035638-exon-sc0001342-1491911889:35879..36846 | TCONS_00035638-exon-sc0001342-1491911889:35879..36846 | Clytia hemisphaerica | exon |
| TCONS_00035638-exon-sc0001342-1491911889:34997..35737 | TCONS_00035638-exon-sc0001342-1491911889:34997..35737 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001342 | supercontig | sc0001342:34997..37692 - |
Blast
The following BLAST results are available for this feature:
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