TCONS_00035640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035640
Unique NameTCONS_00035640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035640 ID=TCONS_00035640|Name=TCONS_00035640|organism=Clytia hemisphaerica|type=transcript|length=255bp
ttttatttttttatcctggAAAATCCttgattttttctgtttaaTGCTAT
TTTGTCCTGAAATATCCTGGAATTGGATGATCTAAAGTCCTGGAAAAAGT
CGAAATTTGTCCTTGAAAGTCCTTGAAAGTcctggaatttgaaaaaaata
attctgtgGTCACCATGNATTTTAATTAGGGTGAGAATTTGTTCtggcat
tttttggtttaatttctCGAAACCCTGAAAAAGCTCAGTTTTTACTCCAA
TCAGC
Run BLAST on NCBI

transcript from alignment at sc0001342:3202..3456

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035640 ID=TCONS_00035640|Name=TCONS_00035640|organism=Clytia hemisphaerica|type=transcript|length=255bp|location=Sequence derived from alignment at sc0001342:3202..3456 (Clytia hemisphaerica)
GCTGATTGGAGTAAAAACTGAGCTTTTTCAGGGTTTCGagaaattaaacc
aaaaaatgccaGAACAAATTCTCACCCTAATTAAAATNCATGGTGACcac
agaattatttttttcaaattccaggACTTTCAAGGACTTTCAAGGACAAA
TTTCGACTTTTTCCAGGACTTTAGATCATCCAATTCCAGGATATTTCAGG
ACAAAATAGCAttaaacagaaaaaatcaaGGATTTTccaggataaaaaaa
taaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020876XLOC_020876Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035640-exon-sc0001342-1491911889:3202..3456TCONS_00035640-exon-sc0001342-1491911889:3202..3456Clytia hemisphaericaexon
TCONS_00035640-exon-sc0001342-1510915933:3202..3456TCONS_00035640-exon-sc0001342-1510915933:3202..3456Clytia hemisphaericaexon
TCONS_00035640-exon-sc0001342-1575043694:3202..3456TCONS_00035640-exon-sc0001342-1575043694:3202..3456Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001342supercontigsc0001342:3202..3456 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.49281	12.4421	4.0129	3.70617	0	0.755368	0.911319	2.02941	19.7116	10.3583	16.5173	21.7157	24.514	17.6248	20.125	18.5736	26.0739	23.4524	33.9078	23.6547	15.0775	24.0097	3.25094	12.5612	0	0	28.1064	23.809	12.588	9.6189
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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