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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035431 ID=TCONS_00035431|Name=TCONS_00035431|organism=Clytia hemisphaerica|type=transcript|length=1689bp ANGATGGTGAACAACCAGTACCTGGGGTGCAGACTGTCTTTATGGAATAC AAATCTTATACTACAACACACCCCAAATCAGTAGAACAGCAAGAAAAGGA ATCCAAAATTGCAGCAAATGTTGACTATCATCCAAGAGGAAAGCAATTTT ATGTGGGTGGTCTAACTTGGTGGACCACAGATGAGCAAGTAGGGAACGCC ATCACCCAATGTGGAATTGCTGATTTGataagtgtcaaattttttgaGAA TCGCATCAATGGACAATCGAAAGGGTTTGCTATGGTCGAAGTGGGCAGTG AAGCATCACAGAAACTGTGTATGGAACGTTTAAGTGCTCACTTGATACAT GGTCGAAATCCTGTTGTTGATTATGTCAATAAGCAATCACTAACTATGTT TGAAAACCAAGCCAGAAAAGAAATCCCTGGATTAGCAGCAGCAGAAAAAC GAGAAGACGCTTTCAACAACTATTCGCGCAAACCGAAGCCTGCTCCAGTC GTGCCCCAACAACAAGCACCGCCGCAAATCATTGCAGGACTTCCACCACC CGGTGCCACTATCGTCAATGGCCCTCCTCCCTTTATGGACCCTAACTTCA TTCAGCAGCCTCAACCACCACAGTTCATCCCTCATGGTCAAATACCACAA GGAGCAGTCATAGTCGATGCCGCTGGAAACTTCATACAAGGAGGTCTTCC TGGACAACTTCCCCCCGGTGTTGTTCCACAAGGTCTTCAGCCCGGCCTTC CCATGCAAGCGCCTGTTCGTCCAGGAGTTGCTCCTCATATTAATCCAGCG TTTATCAACCAAGACCAAGCTCCTCCTATCGACCCTGTGACCGGCGTCCC TTTGCAAACGGCTGGCTTAAATCAACAAGACATGGAATCGATGCGACGAA ACCAAGCAGTTGCTAGCACTGCAATCCAACGCGCAATGACTGATGCAAAC GCCGGTGAGTTCGAAAGTGGAATTGAAACTCTGGTGACGGCCATTTCTCT TATCAAACAATCTTCCACTGCTAACACTGAACCTGCGCAAGTTTTAGTTC AATCGCTGCAAGATTGTTTGCAAGGTTTAGAAGGACAATTAGTTCAAAAA GGTTCGGGTGGACGAGGTGGTGGTCGTTATCAAAACGATTATCGTGAGCA CGAACGTGGCGATAAAAGGAGACGCCGTGATAGATCACGTTCTCGAAGTC GTGAACGAGGTGGTGGCAACCGTCGCTCGTATTCACCACGGCGATCGAGA TCAAGAGAAAGAAGACGACGCTAAATGGAATATATTGCAAACTAGAAACA GTTTTTTAGAGAGAAGATTTTCACCCGTGCGTGATTTACGAAAATGGTAT TGACATTTCAAAACACCCTGAGTGTGTCAAAGAGAAGAAACGTTTATGAT ATGAATAATAGTCTGAGAATTTTAATGCGGTGTTTTtaagtattattttt tttacttatcAAAGGGACCATTGTAAACAAACGatgtatgtttttattgt aaagatTAGTTTCTATCCGGTAATTTCTTTATTCGTAAATCAACTTCTTG Tcctcttaagggctctgaccatagtcaaaaaaattattttggtatttgaa cataaaagttatatttcaggttccttaacacttttaacaaagaattgcct ttataaattgctttttaatcgaatcccttaagagtaatt Run BLAST on NCBI transcript from alignment at sc0001312:13279..19727- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035431 ID=TCONS_00035431|Name=TCONS_00035431|organism=Clytia hemisphaerica|type=transcript|length=6449bp|location=Sequence derived from alignment at sc0001312:13279..19727- (Clytia hemisphaerica) ANGATGGTGAACAACCAGTACCTGGGGTGCAGACTGTCTGTGAGTGATTT
GAAAATTATTTCATGTTCCTTTTTAATTCATTTTAAGGTTAATAATAATA
CTGCCCGTGATCAGTTAAGCCTAAATCGGAGAATTTATGTCTGTTGGTCT
GTCTGAAAACGTTAAGCCAGCCTAGAGTTTTCAAAAATATTCAGTTCTTT
TGCATACTTTGAGGATTTCCAGGAATTTCCGGATGATGTGAAAGAGTTTA
AAATACTAATTTAGTTCGTCCACCTCCACTTTATGCTTTATCTTTTTTGG
CTTGAAACCGGGATTGTCCACCCCCTGTATGAATTTTCTATAGAACCAGC
CCAATGTAAAGAGTTTAAACAACAGCCACAACTTAAAAATGTTGTCTAAC
CTGAGGTTAAGCCTAGTGCTTATTTTTATTATGTATGATTATTGTGCTTA
GACTAATATCTAAAATGCTTCATCTAACAAGAATATCATTGAATTATTAT
TTTCTAGTTATGGAATACAAATCTTATACTACAACACACCCCAAATCAGT
AGAACAGCAAGAAAAGGAATCCAAAATTGCAGCAAATGTTGACTATCATC
CAAGAGGAAAGCAATTTTATGTGGGTGGTCTAACTTGGGTAGGTGATTCG
TTCACTGTGTCGGTGAAGTATGCTTTTTATTTATTTCAATAATGATTACA
GGATAAATTATTAAAACACAGAAATAGTTCTTACTGTAAATAACTCTACC
AGTCCAAGGAACTTTAATAAAGATAAAGCATTGAATATTATTAACTGAAG
CTCCCTGACCGGTCCAGGTGTCAATGTGAATTTTACCATACAACCTTCAA
GTGAAATTAATCGATTATTTTTTATTTGAGCATAGAAAGGCATTTAATTT
GTAACTAATATTGGATCATATTTTATGTATAATAACTTCCTACTGAGATG
TAATATAATTACACGTCATTATCTTTGTAAATTTGTTATAAACAACTGTT
TGTTAAACACTAGTGGACCACAGATGAGCAAGTAGGGAACGCCATCACCC
AATGTGGAATTGCTGATTTGATAAGTGTCAAATTTTTTGAGAATCGCATC
AATGGACAATCGAAAGGGTGAGTGATCCTCCGTTAATCATTTTCTCATTT
GTTTCTTTTATCACAACCTTTCTGTAGTGGTGCTTATAAATAATCGATTT
TTAACTTGATCTTCTTACATTTTGATAATTATGGAAATTTCGATGAGAAT
AAAAGGCTTAATCAGTAAAAAATGTTTCCAATTTTGCANAATGCTTCATC
TAACAAGAATATCATTGAATTATTATTTTCTAGTTATGGAATACAAATCT
TATACTACAACACACCCCAAATCAGTAGAACAGCAAGAAAAGGAATCCAA
AATTGCAGCAAATGTTGACTATCATCCAAGAGGAAAGCAATTTTATGTGG
GTGGTCTAACTTGGGTAGGTGATTCGTTCACTGTGTCGGTGAAGTATGCT
TTTTATTTATTTCAATAATGATTACAGGATAAATTAGCAAAACACAGAAA
TAGTTCTTACTGTAAATAACTCTACCAGTCCAAGGAACTTTAATAAAGAT
AGAGTATTGAATATTATTAACTGAAGCTCCCTGACCGGTCCAGGTGTCAA
TGTGAATTTTACCATACAACCTTCAAGTGAAATTAATCGATTATTTTTTA
TTTGAGCATAGAAAGGCATTTAATTTGTAACTAATATTGGATCATATTTT
ATGTATAATAACTTCCTACTGAGATGTTATATAATTACACGTCATTATCT
TTGTAAATTTGTTATAAACAACTGTTTGTTAAACACTAGTGGACCACAGA
TGAGCAAGTAGGGAACGCCATCACCCAATGTGGAATTGCTGATTTGATAA
GTGTCAAATTTTTTGAGAATCGCATCAATGGACAATCGAAAGGGTGAGTG
ATCCTCCGTTAATCATTTTCTCATTTGTTTCTTTTATCACAACCTTTCTG
TAGTGGTGCTTATAAATAATCGATTTTTAACTTGATCTTCTTACATTTTG
ATAATTATGGAAATTTCGATGAGAATAAAAGGCTTAATCAGTAAAAAATG
TTTCCAATTTTGCAAACTCACTTGATTAATTTAGACCTGATTTGAAATAT
ACCTCATATTTTCCTCCTGCTTACTCTTTGTTTTATTTTAATTTAATTGA
TCTTCCCCATTTGATGCTTTAGATCATCTGCTGTGGGACCCAAAATGCAA
GCCATTGGCTGAATTTTTAACACTGTACATAAGAATTAGTTTTGTAAACA
AATATCCTATAGAACAGTTACCTTCAAAAGGCCGGTAAATTTCTTAAGGA
GCATTTCTTATTAAGCAAAATAAAAAGTTTTTTACGAGAAAAGACTATTG
TTCATCTAATTGATCCTTTTGAAGGTATTTGTTCGTGAACCTTTGGGCAG
TTTCTCAGTATTAAACGTTGTAAGAATTTTTGCTTGTAAGCACGACACTG
TAAATGCAGCTTTTATATTTTTAAATTGGGGGGGGGCAAGGTCATGTGAA
TCAGGTTAACTTGTCTATCAAGTTTGTTGTGGATATCAATTGTTGCTGAA
TGATGTTGCATCTCTTATTCAGCTTGTTGAGTTTGGTGGAAGCAACGTTA
TTTTTAACTTTATGAAATGATTCAGAAAAACAAAACCCTTTAACAGGATG
GTCAGCTCTGACTCCTGCTTGGGTGAAACTAATCAATGTCATCCATTTTC
TTTTCACTTCTCATCATCCTTTTAGCAAACTGATTTGAAAAATTGTACTT
GTTGTTCAGATTCACTTTAGTTTAGTAATGTCTCCGACTCTATTGGCTAA
AATGTAGTGTGGTATTGCAAAAATACTCCATTTCCATTTGAATATAATTC
TAAAACTATTTATTTTTTTGTACAGGTTTGCTATGGTCGAAGTGGGCAGT
GAAGCATCACAGAAACTGTGTATGGAACGTTTAAGTGCTCAGTAAGTTCT
TACTACTTGCATGCAAAAATAATGCAGAAAAAATATTTCTCATTGTCTAT
TGAATATTTTAGAAGAACTTTAAAGAAGTTTGAAGGCGATCGGTAAAACA
ATATAAATGCTTGTAACATCGTTTGAGAAAGAGTTTTGTTTATCTTTATT
TGGGAAACTTATTTTGCTGAGTGGAATGATTGGCACGCCATGGTAATGGA
TTCATTTTTCATTTGTTCTCGTTTCTTTACAGCTTGATACATGGTCGAAA
TCCTGTTGTTGATTATGTCAATAAGCAATCACTAACTATGTTTGAAAACC
AAGCCAGAAAAGGTATTCGTATAGTAACTTCCCCGAATCTTCGTTGCTAG
GAACTAAAGGTTAATGGTGTAAAGTTTTGATAATTTGTCAGCATTTTTTG
CTAAAAGCATTAAAATTTCGAGCCTCGATCCTAATTTCATTTGCACGGTT
CCCACTTGCAGAAAGTCAAGTTGTCACAAAAAAATAGGTGCTGCGTGCTG
GCCTTTATGGTCAGATGTACCAAAACTGATCAAAACTAAGACTTTCGAGA
ATTTCGACGGTGAATTAAAATGTCGTCTGGAAAGTGAGCATCATTTTAAG
ATTACAGACGTCAGAAGACTCTGCTGTTTGTTGGCTATGAAAGAAAATTA
CCACAAATGACTGTTAGTGTATGTTACAATTAGTCTTTATCGTCCTCGTG
TAAACATAGGATCCACCCCCCCAGAGATTTGGGGGTACCTAAATAAAAGA
AAGTTTTAAAAAAGCCAGGTACCTGGAAGTATTCTTAAATTTAGGGGGTA
CCTGATATGTTTGGGGGTACCTGCATTTTCATTAGTGGGGGCGGGGGCTG
TTGTTTTTGTATGAAACCTTGAATTCCTTGAAACCCTTGAAACACCCTTG
AAATGCAAGATTTATACCCTTGAAACCCTTGAATTGCCAAATTTTGTGGC
CATTTTCAGCCATTTTAACTTTCAGAAATACAAAAATTTTACTATTGCGT
GGGATACAAACATCGTAGTGACTTAAAAATGACTTTTGGAACCCCTGAGA
CTCAAGGGGATATTCCACGCCCATTCTTATGGGGTTTACCTTTTAACTCA
TTAAGTGCCACTGGAATTATATGAGATGGGCAGGTCTGGGTGATAGAATG
GGTGGTTGTAAAATTATCAATTATGAGCCAATTTAATGGCCATCCTTTAC
ACAAAAATTGAGAATTCAACCTTTCTCCTTTTGTCGACAGATTTCCTTGA
AATCTTTGAAAACTAGCAAAGATCAACTAAAAACCCTAGAAACCCTTCAA
AGTTTGTGGTATATAAGAATCTCTTGAAACCCTGGAAATTATAGTTAAAA
ATAATNAAGAATCCCTTGAAACCCTGGAAAATTATAGCAAAAAATAACAC
CCTTGAATTTGTTAGAAAAAAAAGTGCTGGCCGCCATGGAAGTATTTTCC
CAGGAATGACAAAAGAGCAAAAAATCCCTTTTTGTATTTTTAACAATAAA
AAAATTAACTACTTACTTACTTAATGATTGGGGGTACCTGAACCCTGGGG
GACCCTATTGTAAATTAGGCAGCTGAAACGCTGAAAAAACGATTTCCAAT
CATTCAACTTAAGATGCATATTCAATTTGTTACTAGACTTGTCAGAATGC
TTTTAAGTTTCTTGAAGAACAACAGATAAAAAGTGGTAGAATCCGTATAT
TTTTTGTCAGAATTCTCTCTGTCAAGTCTCTGCCATTTTCAGGCGAGCAG
TCTTGCAGGTGGTTAAAGTCTGTCTCAATATAATCTGCAGCGGAGACAAA
AAAGCTATAACTTTCGATGTAATTCGAATAAGATACCGGTTTTGTACTCT
TTAAAAAGGTATTCCGGAGTGGAATATTATCACAGAAGAAAAATTCAAAA
TAATAGAAAAATAAAGATGAATAGTGAAGAAAAAGAAAATCAACCTCATG
TAGAAAGTGTTATCATCTTCATTCTTGAACTCTTCGTTCTTATAACGTCA
GAAATGCAAAAGAAAATTCAAAAAATATTTATTCAGTCAAAAAATACAGC
TTAAAACGTTTCCCTGGTGGACTTGAAAAGGGGCTCCTTTTTGTTGTTTT
TTGATGGTTTTCAAAGTCAATCAGATACCTACGTTTACTTGCTAAACCAA
TTAAACTTGTTTACTCTATTCTCTCCACAGAAATCCCTGGATTAGCAGCA
GCAGAAAAACGAGAAGACGCTTTCAACAACTATTCGCGCAAACCGAAGCC
TGCTCCAGTCGTGCCCCAACAACAAGCACCGCCGCAAATCATTGCAGGAC
TTCCACCACCCGGTGCCACTATCGTCAATGGCCCTCCTCCCTTTATGGAC
CCTAACTTCATTCAGCAGCCTCAACCACCACAGTTCATCCCTCATGGTCA
AATACCACAAGGAGCAGTCATAGTCGATGCCGCTGGAAACTTCATACAAG
GAGGTCTTCCTGGACAACTTCCCCCCGGTGTTGTTCCACAAGGTCTTCAG
CCCGGCCTTCCCATGCAAGCGCCTGTTCGTCCAGGAGTTGCTCCTCATAT
TAATCCAGCGTTTATCAACCAAGACCAAGCTCCTCCTATCGACCCTGTGA
CCGGCGTCCCTTTGCAAACGGCTGGCTTAAATCAACAAGACATGGAATCG
ATGCGACGAAACCAAGCAGTTGCTAGCACTGCAATCCAACGCGCAATGAC
TGATGCAAACGCCGGTGAGTTCGAAAGTGGAATTGAAACTCTGGTGACGG
CCATTTCTCTTATCAAACAATCTTCCACTGCTAACACTGAACCTGCGCAA
GTTTTAGTTCAATCGCTGCAAGATTGTTTGCAAGGTTTAGAAGGACAATT
AGTTCAAAAAGGTTCGGGTGGACGAGGTGGTGGTCGTTATCAAAACGATT
ATCGTGAGCACGAACGTGGCGATAAAAGGAGACGCCGTGATAGATCACGT
TCTCGAAGTCGTGAACGAGGTGGTGGCAACCGTCGCTCGTATTCACCACG
GCGATCGAGATCAAGAGAAAGAAGACGACGCTAAATGGAATATATTGCAA
ACTAGAAACAGTTTTTTAGAGAGAAGATTTTCACCCGTGCGTGATTTACG
AAAATGGTATTGACATTTCAAAACACCCTGAGTGTGTCAAAGAGAAGAAA
CGTTTATGATATGAATAATAGTCTGAGAATTTTAATGCGGTGTTTTTAAG
TATTATTTTTTTTACTTATCAAAGGGACCATTGTAAACAAACGATGTATG
TTTTTATTGTAAAGATTAGTTTCTATCCGGTAATTTCTTTATTCGTAAAT
CAACTTCTTGTCCTCTTAAGGGCTCTGACCATAGTCAAAAAAATTATTTT
GGTATTTGAACATAAAAGTTATATTTCAGGTTCCTTAACACTTTTAACAA
AGAATTGCCTTTATAAATTGCTTTTTAATCGAATCCCTTAAGAGTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00035431-exon-sc0001312-1575043694:19689..19727 | TCONS_00035431-exon-sc0001312-1575043694:19689..19727 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1575043694:18264..18394 | TCONS_00035431-exon-sc0001312-1575043694:18264..18394 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1575043694:17785..17888 | TCONS_00035431-exon-sc0001312-1575043694:17785..17888 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1575043694:16737..16802 | TCONS_00035431-exon-sc0001312-1575043694:16737..16802 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1575043694:16416..16495 | TCONS_00035431-exon-sc0001312-1575043694:16416..16495 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1575043694:13279..14547 | TCONS_00035431-exon-sc0001312-1575043694:13279..14547 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1510915933:19689..19727 | TCONS_00035431-exon-sc0001312-1510915933:19689..19727 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1510915933:18264..18394 | TCONS_00035431-exon-sc0001312-1510915933:18264..18394 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1510915933:17785..17888 | TCONS_00035431-exon-sc0001312-1510915933:17785..17888 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1510915933:16737..16802 | TCONS_00035431-exon-sc0001312-1510915933:16737..16802 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1510915933:16416..16495 | TCONS_00035431-exon-sc0001312-1510915933:16416..16495 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1510915933:13279..14547 | TCONS_00035431-exon-sc0001312-1510915933:13279..14547 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1491911889:19689..19727 | TCONS_00035431-exon-sc0001312-1491911889:19689..19727 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1491911889:18264..18394 | TCONS_00035431-exon-sc0001312-1491911889:18264..18394 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1491911889:17785..17888 | TCONS_00035431-exon-sc0001312-1491911889:17785..17888 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1491911889:16737..16802 | TCONS_00035431-exon-sc0001312-1491911889:16737..16802 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1491911889:16416..16495 | TCONS_00035431-exon-sc0001312-1491911889:16416..16495 | Clytia hemisphaerica | exon |
| TCONS_00035431-exon-sc0001312-1491911889:13279..14547 | TCONS_00035431-exon-sc0001312-1491911889:13279..14547 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0001312 | supercontig | sc0001312:13279..19727 - |
Blast
BLAST of TCONS_00035431 vs. Swiss-Prot (Human)
Match: CPSF6 (Cleavage and polyadenylation specificity factor subunit 6 OS=Homo sapiens GN=CPSF6 PE=1 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 4.474e-29 Identity = 63/127 (49.61%), Postives = 80/127 (62.99%), Query Frame = 3
Query: 45 EYKSYTTTHPKSVEQQEKESKIAANVDYHPRGKQ--FYVGGLTWWTTDEQVGNAITQCGIADLISVKFFENRINGQSKGFAMVEVGSEASQKLCMERLSAHLIHGRNPVVDYVNKQSLTMFENQARK 419
E + Y T P +V + A NV Y GK+ Y+G LTWWTTDE + A+ G+ D++ +KFFENR NGQSKGFA+V VGSEAS K M+ L +HG+NPVV NKQ L+ FE Q+RK
Sbjct: 48 EDRDYMDTLPPTVGDDVGKG-AAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRK 173 HSP 2 Score: 84.3445 bits (207), Expect = 4.188e-17 Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 3
Query: 795 PAFINQDQAPPIDPVTGVPLQTA--GLNQQDMES-MRRNQAVASTAIQRAMTDANAGEFESGIETLVTAISLIKQSSTANTEPAQVLVQSLQDCLQGLEGQ 1088
P + D PP G + TA L++ + E M RN+A++S+AI RA++DA+AG++ S IETLVTAISLIKQS + + +VL+ SLQDCL G+E +
Sbjct: 388 PPYDRGDYGPP-----GREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESK 483
The following BLAST results are available for this feature:
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