TCONS_00035428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035428
Unique NameTCONS_00035428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035428 ID=TCONS_00035428|Name=TCONS_00035428|organism=Clytia hemisphaerica|type=transcript|length=1687bp
GATGGTGAACAACCAGTACCTGGGGTGCAGACTGTCTTTATGGAATACAA
ATCTTATACTACAACACACCCCAAATCAGTAGAACAGCAAGAAAAGGAAT
CCAAAATTGCAGCAAATGTTGACTATCATCCAAGAGGAAAGCAATTTTAT
GTGGGTGGTCTAACTTGGTGGACCACAGATGAGCAAGTAGGGAACGCCAT
CACCCAATGTGGAATTGCTGATTTGataagtgtcaaattttttgaGAATC
GCATCAATGGACAATCGAAAGGGTTTGCTATGGTCGAAGTGGGCAGTGAA
GCATCACAGAAACTGTGTATGGAACGTTTAAGTGCTCACTTGATACATGG
TCGAAATCCTGTTGTTGATTATGTCAATAAGCAATCACTAACTATGTTTG
AAAACCAAGCCAGAAAAGAAATCCCTGGATTAGCAGCAGCAGAAAAACGA
GAAGACGCTTTCAACAACTATTCGCGCAAACCGAAGCCTGCTCCAGTCGT
GCCCCAACAACAAGCACCGCCGCAAATCATTGCAGGACTTCCACCACCCG
GTGCCACTATCGTCAATGGCCCTCCTCCCTTTATGGACCCTAACTTCATT
CAGCAGCCTCAACCACCACAGTTCATCCCTCATGGTCAAATACCACAAGG
AGCAGTCATAGTCGATGCCGCTGGAAACTTCATACAAGGAGGTCTTCCTG
GACAACTTCCCCCCGGTGTTGTTCCACAAGGTCTTCAGCCCGGCCTTCCC
ATGCAAGCGCCTGTTCGTCCAGGAGTTGCTCCTCATATTAATCCAGCGTT
TATCAACCAAGACCAAGCTCCTCCTATCGACCCTGTGACCGGCGTCCCTT
TGCAAACGGCTGGCTTAAATCAACAAGACATGGAATCGATGCGACGAAAC
CAAGCAGTTGCTAGCACTGCAATCCAACGCGCAATGACTGATGCAAACGC
CGGTGAGTTCGAAAGTGGAATTGAAACTCTGGTGACGGCCATTTCTCTTA
TCAAACAATCTTCCACTGCTAACACTGAACCTGCGCAAGTTTTAGTTCAA
TCGCTGCAAGATTGTTTGCAAGGTTTAGAAGGACAATTAGTTCAAAAAGG
TTCGGGTGGACGAGGTGGTGGTCGTTATCAAAACGATTATCGTGAGCACG
AACGTGGCGATAAAAGGAGACGCCGTGATAGATCACGTTCTCGAAGTCGT
GAACGAGGTGGTGGCAACCGTCGCTCGTATTCACCACGGCGATCGAGATC
AAGAGAAAGAAGACGACGCTAAATGGAATATATTGCAAACTAGAAACAGT
TTTTTAGAGAGAAGATTTTCACCCGTGCGTGATTTACGAAAATGGTATTG
ACATTTCAAAACACCCTGAGTGTGTCAAAGAGAAGAAACGTTTATGATAT
GAATAATAGTCTGAGAATTTTAATGCGGTGTTTTtaagtattattttttt
tacttatcAAAGGGACCATTGTAAACAAACGatgtatgtttttattgtaa
agatTAGTTTCTATCCGGTAATTTCTTTATTCGTAAATCAACTTCTTGTc
ctcttaagggctctgaccatagtcaaaaaaattattttggtatttgaaca
taaaagttatatttcaggttccttaacacttttaacaaagaattgccttt
ataaattgctttttaatcgaatcccttaagagtaatt
Run BLAST on NCBI

transcript from alignment at sc0001312:13279..19725-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035428 ID=TCONS_00035428|Name=TCONS_00035428|organism=Clytia hemisphaerica|type=transcript|length=6447bp|location=Sequence derived from alignment at sc0001312:13279..19725- (Clytia hemisphaerica)
GATGGTGAACAACCAGTACCTGGGGTGCAGACTGTCTGTGAGTGATTTGA AAATTATTTCATGTTCCTTTTTAATTCATTTTAAGGTTAATAATAATACT GCCCGTGATCAGTTAAGCCTAAATCGGAGAATTTATGTCTGTTGGTCTGT CTGAAAACGTTAAGCCAGCCTAGAGTTTTCAAAAATATTCAGTTCTTTTG CATACTTTGAGGATTTCCAGGAATTTCCGGATGATGTGAAAGAGTTTAAA ATACTAATTTAGTTCGTCCACCTCCACTTTATGCTTTATCTTTTTTGGCT TGAAACCGGGATTGTCCACCCCCTGTATGAATTTTCTATAGAACCAGCCC AATGTAAAGAGTTTAAACAACAGCCACAACTTAAAAATGTTGTCTAACCT GAGGTTAAGCCTAGTGCTTATTTTTATTATGTATGATTATTGTGCTTAGA CTAATATCTAAAATGCTTCATCTAACAAGAATATCATTGAATTATTATTT TCTAGTTATGGAATACAAATCTTATACTACAACACACCCCAAATCAGTAG AACAGCAAGAAAAGGAATCCAAAATTGCAGCAAATGTTGACTATCATCCA AGAGGAAAGCAATTTTATGTGGGTGGTCTAACTTGGGTAGGTGATTCGTT CACTGTGTCGGTGAAGTATGCTTTTTATTTATTTCAATAATGATTACAGG ATAAATTATTAAAACACAGAAATAGTTCTTACTGTAAATAACTCTACCAG TCCAAGGAACTTTAATAAAGATAAAGCATTGAATATTATTAACTGAAGCT CCCTGACCGGTCCAGGTGTCAATGTGAATTTTACCATACAACCTTCAAGT GAAATTAATCGATTATTTTTTATTTGAGCATAGAAAGGCATTTAATTTGT AACTAATATTGGATCATATTTTATGTATAATAACTTCCTACTGAGATGTA ATATAATTACACGTCATTATCTTTGTAAATTTGTTATAAACAACTGTTTG TTAAACACTAGTGGACCACAGATGAGCAAGTAGGGAACGCCATCACCCAA TGTGGAATTGCTGATTTGATAAGTGTCAAATTTTTTGAGAATCGCATCAA TGGACAATCGAAAGGGTGAGTGATCCTCCGTTAATCATTTTCTCATTTGT TTCTTTTATCACAACCTTTCTGTAGTGGTGCTTATAAATAATCGATTTTT AACTTGATCTTCTTACATTTTGATAATTATGGAAATTTCGATGAGAATAA AAGGCTTAATCAGTAAAAAATGTTTCCAATTTTGCANAATGCTTCATCTA ACAAGAATATCATTGAATTATTATTTTCTAGTTATGGAATACAAATCTTA TACTACAACACACCCCAAATCAGTAGAACAGCAAGAAAAGGAATCCAAAA TTGCAGCAAATGTTGACTATCATCCAAGAGGAAAGCAATTTTATGTGGGT GGTCTAACTTGGGTAGGTGATTCGTTCACTGTGTCGGTGAAGTATGCTTT TTATTTATTTCAATAATGATTACAGGATAAATTAGCAAAACACAGAAATA GTTCTTACTGTAAATAACTCTACCAGTCCAAGGAACTTTAATAAAGATAG AGTATTGAATATTATTAACTGAAGCTCCCTGACCGGTCCAGGTGTCAATG TGAATTTTACCATACAACCTTCAAGTGAAATTAATCGATTATTTTTTATT TGAGCATAGAAAGGCATTTAATTTGTAACTAATATTGGATCATATTTTAT GTATAATAACTTCCTACTGAGATGTTATATAATTACACGTCATTATCTTT GTAAATTTGTTATAAACAACTGTTTGTTAAACACTAGTGGACCACAGATG AGCAAGTAGGGAACGCCATCACCCAATGTGGAATTGCTGATTTGATAAGT GTCAAATTTTTTGAGAATCGCATCAATGGACAATCGAAAGGGTGAGTGAT CCTCCGTTAATCATTTTCTCATTTGTTTCTTTTATCACAACCTTTCTGTA GTGGTGCTTATAAATAATCGATTTTTAACTTGATCTTCTTACATTTTGAT AATTATGGAAATTTCGATGAGAATAAAAGGCTTAATCAGTAAAAAATGTT TCCAATTTTGCAAACTCACTTGATTAATTTAGACCTGATTTGAAATATAC CTCATATTTTCCTCCTGCTTACTCTTTGTTTTATTTTAATTTAATTGATC TTCCCCATTTGATGCTTTAGATCATCTGCTGTGGGACCCAAAATGCAAGC CATTGGCTGAATTTTTAACACTGTACATAAGAATTAGTTTTGTAAACAAA TATCCTATAGAACAGTTACCTTCAAAAGGCCGGTAAATTTCTTAAGGAGC ATTTCTTATTAAGCAAAATAAAAAGTTTTTTACGAGAAAAGACTATTGTT CATCTAATTGATCCTTTTGAAGGTATTTGTTCGTGAACCTTTGGGCAGTT TCTCAGTATTAAACGTTGTAAGAATTTTTGCTTGTAAGCACGACACTGTA AATGCAGCTTTTATATTTTTAAATTGGGGGGGGGCAAGGTCATGTGAATC AGGTTAACTTGTCTATCAAGTTTGTTGTGGATATCAATTGTTGCTGAATG ATGTTGCATCTCTTATTCAGCTTGTTGAGTTTGGTGGAAGCAACGTTATT TTTAACTTTATGAAATGATTCAGAAAAACAAAACCCTTTAACAGGATGGT CAGCTCTGACTCCTGCTTGGGTGAAACTAATCAATGTCATCCATTTTCTT TTCACTTCTCATCATCCTTTTAGCAAACTGATTTGAAAAATTGTACTTGT TGTTCAGATTCACTTTAGTTTAGTAATGTCTCCGACTCTATTGGCTAAAA TGTAGTGTGGTATTGCAAAAATACTCCATTTCCATTTGAATATAATTCTA AAACTATTTATTTTTTTGTACAGGTTTGCTATGGTCGAAGTGGGCAGTGA AGCATCACAGAAACTGTGTATGGAACGTTTAAGTGCTCAGTAAGTTCTTA CTACTTGCATGCAAAAATAATGCAGAAAAAATATTTCTCATTGTCTATTG AATATTTTAGAAGAACTTTAAAGAAGTTTGAAGGCGATCGGTAAAACAAT ATAAATGCTTGTAACATCGTTTGAGAAAGAGTTTTGTTTATCTTTATTTG GGAAACTTATTTTGCTGAGTGGAATGATTGGCACGCCATGGTAATGGATT CATTTTTCATTTGTTCTCGTTTCTTTACAGCTTGATACATGGTCGAAATC CTGTTGTTGATTATGTCAATAAGCAATCACTAACTATGTTTGAAAACCAA GCCAGAAAAGGTATTCGTATAGTAACTTCCCCGAATCTTCGTTGCTAGGA ACTAAAGGTTAATGGTGTAAAGTTTTGATAATTTGTCAGCATTTTTTGCT AAAAGCATTAAAATTTCGAGCCTCGATCCTAATTTCATTTGCACGGTTCC CACTTGCAGAAAGTCAAGTTGTCACAAAAAAATAGGTGCTGCGTGCTGGC CTTTATGGTCAGATGTACCAAAACTGATCAAAACTAAGACTTTCGAGAAT TTCGACGGTGAATTAAAATGTCGTCTGGAAAGTGAGCATCATTTTAAGAT TACAGACGTCAGAAGACTCTGCTGTTTGTTGGCTATGAAAGAAAATTACC ACAAATGACTGTTAGTGTATGTTACAATTAGTCTTTATCGTCCTCGTGTA AACATAGGATCCACCCCCCCAGAGATTTGGGGGTACCTAAATAAAAGAAA GTTTTAAAAAAGCCAGGTACCTGGAAGTATTCTTAAATTTAGGGGGTACC TGATATGTTTGGGGGTACCTGCATTTTCATTAGTGGGGGCGGGGGCTGTT GTTTTTGTATGAAACCTTGAATTCCTTGAAACCCTTGAAACACCCTTGAA ATGCAAGATTTATACCCTTGAAACCCTTGAATTGCCAAATTTTGTGGCCA TTTTCAGCCATTTTAACTTTCAGAAATACAAAAATTTTACTATTGCGTGG GATACAAACATCGTAGTGACTTAAAAATGACTTTTGGAACCCCTGAGACT CAAGGGGATATTCCACGCCCATTCTTATGGGGTTTACCTTTTAACTCATT AAGTGCCACTGGAATTATATGAGATGGGCAGGTCTGGGTGATAGAATGGG TGGTTGTAAAATTATCAATTATGAGCCAATTTAATGGCCATCCTTTACAC AAAAATTGAGAATTCAACCTTTCTCCTTTTGTCGACAGATTTCCTTGAAA TCTTTGAAAACTAGCAAAGATCAACTAAAAACCCTAGAAACCCTTCAAAG TTTGTGGTATATAAGAATCTCTTGAAACCCTGGAAATTATAGTTAAAAAT AATNAAGAATCCCTTGAAACCCTGGAAAATTATAGCAAAAAATAACACCC TTGAATTTGTTAGAAAAAAAAGTGCTGGCCGCCATGGAAGTATTTTCCCA GGAATGACAAAAGAGCAAAAAATCCCTTTTTGTATTTTTAACAATAAAAA AATTAACTACTTACTTACTTAATGATTGGGGGTACCTGAACCCTGGGGGA CCCTATTGTAAATTAGGCAGCTGAAACGCTGAAAAAACGATTTCCAATCA TTCAACTTAAGATGCATATTCAATTTGTTACTAGACTTGTCAGAATGCTT TTAAGTTTCTTGAAGAACAACAGATAAAAAGTGGTAGAATCCGTATATTT TTTGTCAGAATTCTCTCTGTCAAGTCTCTGCCATTTTCAGGCGAGCAGTC TTGCAGGTGGTTAAAGTCTGTCTCAATATAATCTGCAGCGGAGACAAAAA AGCTATAACTTTCGATGTAATTCGAATAAGATACCGGTTTTGTACTCTTT AAAAAGGTATTCCGGAGTGGAATATTATCACAGAAGAAAAATTCAAAATA ATAGAAAAATAAAGATGAATAGTGAAGAAAAAGAAAATCAACCTCATGTA GAAAGTGTTATCATCTTCATTCTTGAACTCTTCGTTCTTATAACGTCAGA AATGCAAAAGAAAATTCAAAAAATATTTATTCAGTCAAAAAATACAGCTT AAAACGTTTCCCTGGTGGACTTGAAAAGGGGCTCCTTTTTGTTGTTTTTT GATGGTTTTCAAAGTCAATCAGATACCTACGTTTACTTGCTAAACCAATT AAACTTGTTTACTCTATTCTCTCCACAGAAATCCCTGGATTAGCAGCAGC AGAAAAACGAGAAGACGCTTTCAACAACTATTCGCGCAAACCGAAGCCTG CTCCAGTCGTGCCCCAACAACAAGCACCGCCGCAAATCATTGCAGGACTT CCACCACCCGGTGCCACTATCGTCAATGGCCCTCCTCCCTTTATGGACCC TAACTTCATTCAGCAGCCTCAACCACCACAGTTCATCCCTCATGGTCAAA TACCACAAGGAGCAGTCATAGTCGATGCCGCTGGAAACTTCATACAAGGA GGTCTTCCTGGACAACTTCCCCCCGGTGTTGTTCCACAAGGTCTTCAGCC CGGCCTTCCCATGCAAGCGCCTGTTCGTCCAGGAGTTGCTCCTCATATTA ATCCAGCGTTTATCAACCAAGACCAAGCTCCTCCTATCGACCCTGTGACC GGCGTCCCTTTGCAAACGGCTGGCTTAAATCAACAAGACATGGAATCGAT GCGACGAAACCAAGCAGTTGCTAGCACTGCAATCCAACGCGCAATGACTG ATGCAAACGCCGGTGAGTTCGAAAGTGGAATTGAAACTCTGGTGACGGCC ATTTCTCTTATCAAACAATCTTCCACTGCTAACACTGAACCTGCGCAAGT TTTAGTTCAATCGCTGCAAGATTGTTTGCAAGGTTTAGAAGGACAATTAG TTCAAAAAGGTTCGGGTGGACGAGGTGGTGGTCGTTATCAAAACGATTAT CGTGAGCACGAACGTGGCGATAAAAGGAGACGCCGTGATAGATCACGTTC TCGAAGTCGTGAACGAGGTGGTGGCAACCGTCGCTCGTATTCACCACGGC GATCGAGATCAAGAGAAAGAAGACGACGCTAAATGGAATATATTGCAAAC TAGAAACAGTTTTTTAGAGAGAAGATTTTCACCCGTGCGTGATTTACGAA AATGGTATTGACATTTCAAAACACCCTGAGTGTGTCAAAGAGAAGAAACG TTTATGATATGAATAATAGTCTGAGAATTTTAATGCGGTGTTTTTAAGTA TTATTTTTTTTACTTATCAAAGGGACCATTGTAAACAAACGATGTATGTT TTTATTGTAAAGATTAGTTTCTATCCGGTAATTTCTTTATTCGTAAATCA ACTTCTTGTCCTCTTAAGGGCTCTGACCATAGTCAAAAAAATTATTTTGG TATTTGAACATAAAAGTTATATTTCAGGTTCCTTAACACTTTTAACAAAG AATTGCCTTTATAAATTGCTTTTTAATCGAATCCCTTAAGAGTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020713XLOC_020713Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035428-exon-sc0001312-1575043694:19689..19725TCONS_00035428-exon-sc0001312-1575043694:19689..19725Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1575043694:19090..19220TCONS_00035428-exon-sc0001312-1575043694:19090..19220Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1575043694:17785..17888TCONS_00035428-exon-sc0001312-1575043694:17785..17888Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1575043694:16737..16802TCONS_00035428-exon-sc0001312-1575043694:16737..16802Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1575043694:16416..16495TCONS_00035428-exon-sc0001312-1575043694:16416..16495Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1575043694:13279..14547TCONS_00035428-exon-sc0001312-1575043694:13279..14547Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1510915933:19689..19725TCONS_00035428-exon-sc0001312-1510915933:19689..19725Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1510915933:19090..19220TCONS_00035428-exon-sc0001312-1510915933:19090..19220Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1510915933:17785..17888TCONS_00035428-exon-sc0001312-1510915933:17785..17888Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1510915933:16737..16802TCONS_00035428-exon-sc0001312-1510915933:16737..16802Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1510915933:16416..16495TCONS_00035428-exon-sc0001312-1510915933:16416..16495Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1510915933:13279..14547TCONS_00035428-exon-sc0001312-1510915933:13279..14547Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1491911889:19689..19725TCONS_00035428-exon-sc0001312-1491911889:19689..19725Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1491911889:19090..19220TCONS_00035428-exon-sc0001312-1491911889:19090..19220Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1491911889:17785..17888TCONS_00035428-exon-sc0001312-1491911889:17785..17888Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1491911889:16737..16802TCONS_00035428-exon-sc0001312-1491911889:16737..16802Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1491911889:16416..16495TCONS_00035428-exon-sc0001312-1491911889:16416..16495Clytia hemisphaericaexon
TCONS_00035428-exon-sc0001312-1491911889:13279..14547TCONS_00035428-exon-sc0001312-1491911889:13279..14547Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001312supercontigsc0001312:13279..19725 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 3.18539e-10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.28648e-09 0 0 0 2.39936e-05 4.53265e-10 0 0
Blast
BLAST of TCONS_00035428 vs. Swiss-Prot (Human)
Match: CPSF6 (Cleavage and polyadenylation specificity factor subunit 6 OS=Homo sapiens GN=CPSF6 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.474e-29
Identity = 63/127 (49.61%), Postives = 80/127 (62.99%), Query Frame = 1
Query:   43 EYKSYTTTHPKSVEQQEKESKIAANVDYHPRGKQ--FYVGGLTWWTTDEQVGNAITQCGIADLISVKFFENRINGQSKGFAMVEVGSEASQKLCMERLSAHLIHGRNPVVDYVNKQSLTMFENQARK 417
            E + Y  T P +V     +   A NV Y   GK+   Y+G LTWWTTDE +  A+   G+ D++ +KFFENR NGQSKGFA+V VGSEAS K  M+ L    +HG+NPVV   NKQ L+ FE Q+RK
Sbjct:   48 EDRDYMDTLPPTVGDDVGKG-AAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRK 173          

HSP 2 Score: 84.3445 bits (207), Expect = 4.188e-17
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  793 PAFINQDQAPPIDPVTGVPLQTA--GLNQQDMES-MRRNQAVASTAIQRAMTDANAGEFESGIETLVTAISLIKQSSTANTEPAQVLVQSLQDCLQGLEGQ 1086
            P +   D  PP     G  + TA   L++ + E  M RN+A++S+AI RA++DA+AG++ S IETLVTAISLIKQS  +  +  +VL+ SLQDCL G+E +
Sbjct:  388 PPYDRGDYGPP-----GREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESK 483          
The following BLAST results are available for this feature:
BLAST of TCONS_00035428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPSF64.474e-2949.61Cleavage and polyadenylation specificity factor su... [more]
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