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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035426 ID=TCONS_00035426|Name=TCONS_00035426|organism=Clytia hemisphaerica|type=transcript|length=1687bp GATGGTGAACAACCAGTACCTGGGGTGCAGACTGTCTTTATGGAATACAA ATCTTATACTACAACACACCCCAAATCAGTAGAACAGCAAGAAAAGGAAT CCAAAATTGCAGCAAATGTTGACTATCATCCAAGAGGAAAGCAATTTTAT GTGGGTGGTCTAACTTGGTGGACCACAGATGAGCAAGTAGGGAACGCCAT CACCCAATGTGGAATTGCTGATTTGataagtgtcaaattttttgaGAATC GCATCAATGGACAATCGAAAGGGTTTGCTATGGTCGAAGTGGGCAGTGAA GCATCACAGAAACTGTGTATGGAACGTTTAAGTGCTCACTTGATACATGG TCGAAATCCTGTTGTTGATTATGTCAATAAGCAATCACTAACTATGTTTG AAAACCAAGCCAGAAAAGAAATCCCTGGATTAGCAGCAGCAGAAAAACGA GAAGACGCTTTCAACAACTATTCGCGCAAACCGAAGCCTGCTCCAGTCGT GCCCCAACAACAAGCACCGCCGCAAATCATTGCAGGACTTCCACCACCCG GTGCCACTATCGTCAATGGCCCTCCTCCCTTTATGGACCCTAACTTCATT CAGCAGCCTCAACCACCACAGTTCATCCCTCATGGTCAAATACCACAAGG AGCAGTCATAGTCGATGCCGCTGGAAACTTCATACAAGGAGGTCTTCCTG GACAACTTCCCCCCGGTGTTGTTCCACAAGGTCTTCAGCCCGGCCTTCCC ATGCAAGCGCCTGTTCGTCCAGGAGTTGCTCCTCATATTAATCCAGCGTT TATCAACCAAGACCAAGCTCCTCCTATCGACCCTGTGACCGGCGTCCCTT TGCAAACGGCTGGCTTAAATCAACAAGACATGGAATCGATGCGACGAAAC CAAGCAGTTGCTAGCACTGCAATCCAACGCGCAATGACTGATGCAAACGC CGGTGAGTTCGAAAGTGGAATTGAAACTCTGGTGACGGCCATTTCTCTTA TCAAACAATCTTCCACTGCTAACACTGAACCTGCGCAAGTTTTAGTTCAA TCGCTGCAAGATTGTTTGCAAGGTTTAGAAGGACAATTAGTTCAAAAAGG TTCGGGTGGACGAGGTGGTGGTCGTTATCAAAACGATTATCGTGAGCACG AACGTGGCGATAAAAGGAGACGCCGTGATAGATCACGTTCTCGAAGTCGT GAACGAGGTGGTGGCAACCGTCGCTCGTATTCACCACGGCGATCGAGATC AAGAGAAAGAAGACGACGCTAAATGGAATATATTGCAAACTAGAAACAGT TTTTTAGAGAGAAGATTTTCACCCGTGCGTGATTTACGAAAATGGTATTG ACATTTCAAAACACCCTGAGTGTGTCAAAGAGAAGAAACGTTTATGATAT GAATAATAGTCTGAGAATTTTAATGCGGTGTTTTtaagtattattttttt tacttatcAAAGGGACCATTGTAAACAAACGatgtatgtttttattgtaa agatTAGTTTCTATCCGGTAATTTCTTTATTCGTAAATCAACTTCTTGTc ctcttaagggctctgaccatagtcaaaaaaattattttggtatttgaaca taaaagttatatttcaggttccttaacacttttaacaaagaattgccttt ataaattgctttttaatcgaatcccttaagagtaatt Run BLAST on NCBI transcript from alignment at sc0001312:13279..19725- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035426 ID=TCONS_00035426|Name=TCONS_00035426|organism=Clytia hemisphaerica|type=transcript|length=6447bp|location=Sequence derived from alignment at sc0001312:13279..19725- (Clytia hemisphaerica) GATGGTGAACAACCAGTACCTGGGGTGCAGACTGTCTGTGAGTGATTTGA
AAATTATTTCATGTTCCTTTTTAATTCATTTTAAGGTTAATAATAATACT
GCCCGTGATCAGTTAAGCCTAAATCGGAGAATTTATGTCTGTTGGTCTGT
CTGAAAACGTTAAGCCAGCCTAGAGTTTTCAAAAATATTCAGTTCTTTTG
CATACTTTGAGGATTTCCAGGAATTTCCGGATGATGTGAAAGAGTTTAAA
ATACTAATTTAGTTCGTCCACCTCCACTTTATGCTTTATCTTTTTTGGCT
TGAAACCGGGATTGTCCACCCCCTGTATGAATTTTCTATAGAACCAGCCC
AATGTAAAGAGTTTAAACAACAGCCACAACTTAAAAATGTTGTCTAACCT
GAGGTTAAGCCTAGTGCTTATTTTTATTATGTATGATTATTGTGCTTAGA
CTAATATCTAAAATGCTTCATCTAACAAGAATATCATTGAATTATTATTT
TCTAGTTATGGAATACAAATCTTATACTACAACACACCCCAAATCAGTAG
AACAGCAAGAAAAGGAATCCAAAATTGCAGCAAATGTTGACTATCATCCA
AGAGGAAAGCAATTTTATGTGGGTGGTCTAACTTGGGTAGGTGATTCGTT
CACTGTGTCGGTGAAGTATGCTTTTTATTTATTTCAATAATGATTACAGG
ATAAATTATTAAAACACAGAAATAGTTCTTACTGTAAATAACTCTACCAG
TCCAAGGAACTTTAATAAAGATAAAGCATTGAATATTATTAACTGAAGCT
CCCTGACCGGTCCAGGTGTCAATGTGAATTTTACCATACAACCTTCAAGT
GAAATTAATCGATTATTTTTTATTTGAGCATAGAAAGGCATTTAATTTGT
AACTAATATTGGATCATATTTTATGTATAATAACTTCCTACTGAGATGTA
ATATAATTACACGTCATTATCTTTGTAAATTTGTTATAAACAACTGTTTG
TTAAACACTAGTGGACCACAGATGAGCAAGTAGGGAACGCCATCACCCAA
TGTGGAATTGCTGATTTGATAAGTGTCAAATTTTTTGAGAATCGCATCAA
TGGACAATCGAAAGGGTGAGTGATCCTCCGTTAATCATTTTCTCATTTGT
TTCTTTTATCACAACCTTTCTGTAGTGGTGCTTATAAATAATCGATTTTT
AACTTGATCTTCTTACATTTTGATAATTATGGAAATTTCGATGAGAATAA
AAGGCTTAATCAGTAAAAAATGTTTCCAATTTTGCANAATGCTTCATCTA
ACAAGAATATCATTGAATTATTATTTTCTAGTTATGGAATACAAATCTTA
TACTACAACACACCCCAAATCAGTAGAACAGCAAGAAAAGGAATCCAAAA
TTGCAGCAAATGTTGACTATCATCCAAGAGGAAAGCAATTTTATGTGGGT
GGTCTAACTTGGGTAGGTGATTCGTTCACTGTGTCGGTGAAGTATGCTTT
TTATTTATTTCAATAATGATTACAGGATAAATTAGCAAAACACAGAAATA
GTTCTTACTGTAAATAACTCTACCAGTCCAAGGAACTTTAATAAAGATAG
AGTATTGAATATTATTAACTGAAGCTCCCTGACCGGTCCAGGTGTCAATG
TGAATTTTACCATACAACCTTCAAGTGAAATTAATCGATTATTTTTTATT
TGAGCATAGAAAGGCATTTAATTTGTAACTAATATTGGATCATATTTTAT
GTATAATAACTTCCTACTGAGATGTTATATAATTACACGTCATTATCTTT
GTAAATTTGTTATAAACAACTGTTTGTTAAACACTAGTGGACCACAGATG
AGCAAGTAGGGAACGCCATCACCCAATGTGGAATTGCTGATTTGATAAGT
GTCAAATTTTTTGAGAATCGCATCAATGGACAATCGAAAGGGTGAGTGAT
CCTCCGTTAATCATTTTCTCATTTGTTTCTTTTATCACAACCTTTCTGTA
GTGGTGCTTATAAATAATCGATTTTTAACTTGATCTTCTTACATTTTGAT
AATTATGGAAATTTCGATGAGAATAAAAGGCTTAATCAGTAAAAAATGTT
TCCAATTTTGCAAACTCACTTGATTAATTTAGACCTGATTTGAAATATAC
CTCATATTTTCCTCCTGCTTACTCTTTGTTTTATTTTAATTTAATTGATC
TTCCCCATTTGATGCTTTAGATCATCTGCTGTGGGACCCAAAATGCAAGC
CATTGGCTGAATTTTTAACACTGTACATAAGAATTAGTTTTGTAAACAAA
TATCCTATAGAACAGTTACCTTCAAAAGGCCGGTAAATTTCTTAAGGAGC
ATTTCTTATTAAGCAAAATAAAAAGTTTTTTACGAGAAAAGACTATTGTT
CATCTAATTGATCCTTTTGAAGGTATTTGTTCGTGAACCTTTGGGCAGTT
TCTCAGTATTAAACGTTGTAAGAATTTTTGCTTGTAAGCACGACACTGTA
AATGCAGCTTTTATATTTTTAAATTGGGGGGGGGCAAGGTCATGTGAATC
AGGTTAACTTGTCTATCAAGTTTGTTGTGGATATCAATTGTTGCTGAATG
ATGTTGCATCTCTTATTCAGCTTGTTGAGTTTGGTGGAAGCAACGTTATT
TTTAACTTTATGAAATGATTCAGAAAAACAAAACCCTTTAACAGGATGGT
CAGCTCTGACTCCTGCTTGGGTGAAACTAATCAATGTCATCCATTTTCTT
TTCACTTCTCATCATCCTTTTAGCAAACTGATTTGAAAAATTGTACTTGT
TGTTCAGATTCACTTTAGTTTAGTAATGTCTCCGACTCTATTGGCTAAAA
TGTAGTGTGGTATTGCAAAAATACTCCATTTCCATTTGAATATAATTCTA
AAACTATTTATTTTTTTGTACAGGTTTGCTATGGTCGAAGTGGGCAGTGA
AGCATCACAGAAACTGTGTATGGAACGTTTAAGTGCTCAGTAAGTTCTTA
CTACTTGCATGCAAAAATAATGCAGAAAAAATATTTCTCATTGTCTATTG
AATATTTTAGAAGAACTTTAAAGAAGTTTGAAGGCGATCGGTAAAACAAT
ATAAATGCTTGTAACATCGTTTGAGAAAGAGTTTTGTTTATCTTTATTTG
GGAAACTTATTTTGCTGAGTGGAATGATTGGCACGCCATGGTAATGGATT
CATTTTTCATTTGTTCTCGTTTCTTTACAGCTTGATACATGGTCGAAATC
CTGTTGTTGATTATGTCAATAAGCAATCACTAACTATGTTTGAAAACCAA
GCCAGAAAAGGTATTCGTATAGTAACTTCCCCGAATCTTCGTTGCTAGGA
ACTAAAGGTTAATGGTGTAAAGTTTTGATAATTTGTCAGCATTTTTTGCT
AAAAGCATTAAAATTTCGAGCCTCGATCCTAATTTCATTTGCACGGTTCC
CACTTGCAGAAAGTCAAGTTGTCACAAAAAAATAGGTGCTGCGTGCTGGC
CTTTATGGTCAGATGTACCAAAACTGATCAAAACTAAGACTTTCGAGAAT
TTCGACGGTGAATTAAAATGTCGTCTGGAAAGTGAGCATCATTTTAAGAT
TACAGACGTCAGAAGACTCTGCTGTTTGTTGGCTATGAAAGAAAATTACC
ACAAATGACTGTTAGTGTATGTTACAATTAGTCTTTATCGTCCTCGTGTA
AACATAGGATCCACCCCCCCAGAGATTTGGGGGTACCTAAATAAAAGAAA
GTTTTAAAAAAGCCAGGTACCTGGAAGTATTCTTAAATTTAGGGGGTACC
TGATATGTTTGGGGGTACCTGCATTTTCATTAGTGGGGGCGGGGGCTGTT
GTTTTTGTATGAAACCTTGAATTCCTTGAAACCCTTGAAACACCCTTGAA
ATGCAAGATTTATACCCTTGAAACCCTTGAATTGCCAAATTTTGTGGCCA
TTTTCAGCCATTTTAACTTTCAGAAATACAAAAATTTTACTATTGCGTGG
GATACAAACATCGTAGTGACTTAAAAATGACTTTTGGAACCCCTGAGACT
CAAGGGGATATTCCACGCCCATTCTTATGGGGTTTACCTTTTAACTCATT
AAGTGCCACTGGAATTATATGAGATGGGCAGGTCTGGGTGATAGAATGGG
TGGTTGTAAAATTATCAATTATGAGCCAATTTAATGGCCATCCTTTACAC
AAAAATTGAGAATTCAACCTTTCTCCTTTTGTCGACAGATTTCCTTGAAA
TCTTTGAAAACTAGCAAAGATCAACTAAAAACCCTAGAAACCCTTCAAAG
TTTGTGGTATATAAGAATCTCTTGAAACCCTGGAAATTATAGTTAAAAAT
AATNAAGAATCCCTTGAAACCCTGGAAAATTATAGCAAAAAATAACACCC
TTGAATTTGTTAGAAAAAAAAGTGCTGGCCGCCATGGAAGTATTTTCCCA
GGAATGACAAAAGAGCAAAAAATCCCTTTTTGTATTTTTAACAATAAAAA
AATTAACTACTTACTTACTTAATGATTGGGGGTACCTGAACCCTGGGGGA
CCCTATTGTAAATTAGGCAGCTGAAACGCTGAAAAAACGATTTCCAATCA
TTCAACTTAAGATGCATATTCAATTTGTTACTAGACTTGTCAGAATGCTT
TTAAGTTTCTTGAAGAACAACAGATAAAAAGTGGTAGAATCCGTATATTT
TTTGTCAGAATTCTCTCTGTCAAGTCTCTGCCATTTTCAGGCGAGCAGTC
TTGCAGGTGGTTAAAGTCTGTCTCAATATAATCTGCAGCGGAGACAAAAA
AGCTATAACTTTCGATGTAATTCGAATAAGATACCGGTTTTGTACTCTTT
AAAAAGGTATTCCGGAGTGGAATATTATCACAGAAGAAAAATTCAAAATA
ATAGAAAAATAAAGATGAATAGTGAAGAAAAAGAAAATCAACCTCATGTA
GAAAGTGTTATCATCTTCATTCTTGAACTCTTCGTTCTTATAACGTCAGA
AATGCAAAAGAAAATTCAAAAAATATTTATTCAGTCAAAAAATACAGCTT
AAAACGTTTCCCTGGTGGACTTGAAAAGGGGCTCCTTTTTGTTGTTTTTT
GATGGTTTTCAAAGTCAATCAGATACCTACGTTTACTTGCTAAACCAATT
AAACTTGTTTACTCTATTCTCTCCACAGAAATCCCTGGATTAGCAGCAGC
AGAAAAACGAGAAGACGCTTTCAACAACTATTCGCGCAAACCGAAGCCTG
CTCCAGTCGTGCCCCAACAACAAGCACCGCCGCAAATCATTGCAGGACTT
CCACCACCCGGTGCCACTATCGTCAATGGCCCTCCTCCCTTTATGGACCC
TAACTTCATTCAGCAGCCTCAACCACCACAGTTCATCCCTCATGGTCAAA
TACCACAAGGAGCAGTCATAGTCGATGCCGCTGGAAACTTCATACAAGGA
GGTCTTCCTGGACAACTTCCCCCCGGTGTTGTTCCACAAGGTCTTCAGCC
CGGCCTTCCCATGCAAGCGCCTGTTCGTCCAGGAGTTGCTCCTCATATTA
ATCCAGCGTTTATCAACCAAGACCAAGCTCCTCCTATCGACCCTGTGACC
GGCGTCCCTTTGCAAACGGCTGGCTTAAATCAACAAGACATGGAATCGAT
GCGACGAAACCAAGCAGTTGCTAGCACTGCAATCCAACGCGCAATGACTG
ATGCAAACGCCGGTGAGTTCGAAAGTGGAATTGAAACTCTGGTGACGGCC
ATTTCTCTTATCAAACAATCTTCCACTGCTAACACTGAACCTGCGCAAGT
TTTAGTTCAATCGCTGCAAGATTGTTTGCAAGGTTTAGAAGGACAATTAG
TTCAAAAAGGTTCGGGTGGACGAGGTGGTGGTCGTTATCAAAACGATTAT
CGTGAGCACGAACGTGGCGATAAAAGGAGACGCCGTGATAGATCACGTTC
TCGAAGTCGTGAACGAGGTGGTGGCAACCGTCGCTCGTATTCACCACGGC
GATCGAGATCAAGAGAAAGAAGACGACGCTAAATGGAATATATTGCAAAC
TAGAAACAGTTTTTTAGAGAGAAGATTTTCACCCGTGCGTGATTTACGAA
AATGGTATTGACATTTCAAAACACCCTGAGTGTGTCAAAGAGAAGAAACG
TTTATGATATGAATAATAGTCTGAGAATTTTAATGCGGTGTTTTTAAGTA
TTATTTTTTTTACTTATCAAAGGGACCATTGTAAACAAACGATGTATGTT
TTTATTGTAAAGATTAGTTTCTATCCGGTAATTTCTTTATTCGTAAATCA
ACTTCTTGTCCTCTTAAGGGCTCTGACCATAGTCAAAAAAATTATTTTGG
TATTTGAACATAAAAGTTATATTTCAGGTTCCTTAACACTTTTAACAAAG
AATTGCCTTTATAAATTGCTTTTTAATCGAATCCCTTAAGAGTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00035426-exon-sc0001312-1575043694:19689..19725 | TCONS_00035426-exon-sc0001312-1575043694:19689..19725 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1575043694:19108..19220 | TCONS_00035426-exon-sc0001312-1575043694:19108..19220 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1575043694:18264..18281 | TCONS_00035426-exon-sc0001312-1575043694:18264..18281 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1575043694:17785..17888 | TCONS_00035426-exon-sc0001312-1575043694:17785..17888 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1575043694:16737..16802 | TCONS_00035426-exon-sc0001312-1575043694:16737..16802 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1575043694:16416..16495 | TCONS_00035426-exon-sc0001312-1575043694:16416..16495 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1575043694:13279..14547 | TCONS_00035426-exon-sc0001312-1575043694:13279..14547 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1510915933:19689..19725 | TCONS_00035426-exon-sc0001312-1510915933:19689..19725 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1510915933:19108..19220 | TCONS_00035426-exon-sc0001312-1510915933:19108..19220 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1510915933:18264..18281 | TCONS_00035426-exon-sc0001312-1510915933:18264..18281 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1510915933:17785..17888 | TCONS_00035426-exon-sc0001312-1510915933:17785..17888 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1510915933:16737..16802 | TCONS_00035426-exon-sc0001312-1510915933:16737..16802 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1510915933:16416..16495 | TCONS_00035426-exon-sc0001312-1510915933:16416..16495 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1510915933:13279..14547 | TCONS_00035426-exon-sc0001312-1510915933:13279..14547 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1491911889:19689..19725 | TCONS_00035426-exon-sc0001312-1491911889:19689..19725 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1491911889:19108..19220 | TCONS_00035426-exon-sc0001312-1491911889:19108..19220 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1491911889:18264..18281 | TCONS_00035426-exon-sc0001312-1491911889:18264..18281 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1491911889:17785..17888 | TCONS_00035426-exon-sc0001312-1491911889:17785..17888 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1491911889:16737..16802 | TCONS_00035426-exon-sc0001312-1491911889:16737..16802 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1491911889:16416..16495 | TCONS_00035426-exon-sc0001312-1491911889:16416..16495 | Clytia hemisphaerica | exon |
| TCONS_00035426-exon-sc0001312-1491911889:13279..14547 | TCONS_00035426-exon-sc0001312-1491911889:13279..14547 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0001312 | supercontig | sc0001312:13279..19725 - |
Blast
BLAST of TCONS_00035426 vs. Swiss-Prot (Human)
Match: CPSF6 (Cleavage and polyadenylation specificity factor subunit 6 OS=Homo sapiens GN=CPSF6 PE=1 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 4.474e-29 Identity = 63/127 (49.61%), Postives = 80/127 (62.99%), Query Frame = 1
Query: 43 EYKSYTTTHPKSVEQQEKESKIAANVDYHPRGKQ--FYVGGLTWWTTDEQVGNAITQCGIADLISVKFFENRINGQSKGFAMVEVGSEASQKLCMERLSAHLIHGRNPVVDYVNKQSLTMFENQARK 417
E + Y T P +V + A NV Y GK+ Y+G LTWWTTDE + A+ G+ D++ +KFFENR NGQSKGFA+V VGSEAS K M+ L +HG+NPVV NKQ L+ FE Q+RK
Sbjct: 48 EDRDYMDTLPPTVGDDVGKG-AAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRK 173 HSP 2 Score: 84.3445 bits (207), Expect = 4.188e-17 Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 1
Query: 793 PAFINQDQAPPIDPVTGVPLQTA--GLNQQDMES-MRRNQAVASTAIQRAMTDANAGEFESGIETLVTAISLIKQSSTANTEPAQVLVQSLQDCLQGLEGQ 1086
P + D PP G + TA L++ + E M RN+A++S+AI RA++DA+AG++ S IETLVTAISLIKQS + + +VL+ SLQDCL G+E +
Sbjct: 388 PPYDRGDYGPP-----GREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESK 483
The following BLAST results are available for this feature:
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