TCONS_00035362 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035362
Unique NameTCONS_00035362
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035362 ID=TCONS_00035362|Name=TCONS_00035362|organism=Clytia hemisphaerica|type=transcript|length=222bp
CCTCTACACCTCTTAAACAGGGCTGTCTTAAATGCGGCAGCTGTCACTTA
CATCAAAAGTATCACAGATCCCGACATCTTAACATCCATTTACGCCATTA
TGGATTCTATCCAGACAGGAATTGGTTGGATTATAGGGAACTCTTTCGGT
GGCTATGTTTACCATTTATACGGTGGCCGAGTATTGTATATATCCGTAGC
GTGTATTGATCTTTTATGggcg
Run BLAST on NCBI

transcript from alignment at sc0001302:40884..41105

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035362 ID=TCONS_00035362|Name=TCONS_00035362|organism=Clytia hemisphaerica|type=transcript|length=222bp|location=Sequence derived from alignment at sc0001302:40884..41105 (Clytia hemisphaerica)
cgccCATAAAAGATCAATACACGCTACGGATATATACAATACTCGGCCAC
CGTATAAATGGTAAACATAGCCACCGAAAGAGTTCCCTATAATCCAACCA
ATTCCTGTCTGGATAGAATCCATAATGGCGTAAATGGATGTTAAGATGTC
GGGATCTGTGATACTTTTGATGTAAGTGACAGCTGCCGCATTTAAGACAG
CCCTGTTTAAGAGGTGTAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020654XLOC_020654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035362-exon-sc0001302-1491911889:40884..41105TCONS_00035362-exon-sc0001302-1491911889:40884..41105Clytia hemisphaericaexon
TCONS_00035362-exon-sc0001302-1510915933:40884..41105TCONS_00035362-exon-sc0001302-1510915933:40884..41105Clytia hemisphaericaexon
TCONS_00035362-exon-sc0001302-1575043694:40884..41105TCONS_00035362-exon-sc0001302-1575043694:40884..41105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001302supercontigsc0001302:40884..41105 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.16928	0	0	17.7871	12.7778	12.3327	11.5457	3.11866	0	5.45115	5.0069	3.08005	0	0	0	6.01066	7.92686	0.777103	0	0	3.39287	1.37483	0.640063	1.28738	2.29792	0	0	0.421777	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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