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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035296 ID=TCONS_00035296|Name=TCONS_00035296|organism=Clytia hemisphaerica|type=transcript|length=2847bpRun BLAST on NCBI protein sequence of TCONS_00035296-protein >TCONS_00035296-protein ID=TCONS_00035296-protein|Name=TCONS_00035296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=590bp MCLVMDPNIAFDDLCDDLRDLCKFNSEDPFTMKWIDEEGDPCTLSKQVELRun BLAST on NCBI transcript from alignment at sc0001287:41556..73750- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035296 ID=TCONS_00035296|Name=TCONS_00035296|organism=Clytia hemisphaerica|type=transcript|length=32195bp|location=Sequence derived from alignment at sc0001287:41556..73750- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001287:41556..73750- >TCONS_00035296 ID=TCONS_00035296|Name=TCONS_00035296|organism=Clytia hemisphaerica|type=CDS|length=30141bp|location=Sequence derived from alignment at sc0001287:41556..73750- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00035296 vs. Swiss-Prot (Human)
Match: KPCI (Protein kinase C iota type OS=Homo sapiens GN=PRKCI PE=1 SV=2) HSP 1 Score: 753.051 bits (1943), Expect = 0.000e+0 Identity = 376/594 (63.30%), Postives = 459/594 (77.27%), Query Frame = 1
Query: 130 DVMCLVMDPNIAFXXXXXXXXXXXKFNSEDPFTMKWIDEEGDPCTLSKQVELDEAVRLYHINAESQLVINVFKGTPKQPGMLMEGEDR-LYRRGARRWRKIYQFNGHSFVARRFGKMTVCPICRDIIWGLGRQGVKCMNCKYTVHKRCHRIVKLICGEHISQQAPLQYTGDTVPEVHGYTNHMLDLDRSMKRNKSTTSS-GRRGLVKDEFYTKDQDVEPGSGSRIGVNDFDFIRVIGRGSYAKVMMVRLKETDRIYAMKVIKKELVNDDEDIDWVQTEKHVFEIASNHPFLVGLHSCFQTRSRLFFVIEFVNGGDLMFHMQRMRRLEESHARFYAAEISCALNYLHEKGIIYRDLKLDNVLLDPDGHVKLTDYGMCKEGLLPGEKTSTFCGTPNYIAPEILRGEDYAASVDWWALGVLLYEMLAGRSPFDIVTATDNPDQNTEDYLFQVILEKPIRIPRSLSVRAASCLKGFLNKNPLERLGCHPQTGFSDICTHFFFKSIDWEALDKRQVAPPFKPKVEDEDDILSNFDPQFTTEPVHLTPDDPFQDFEFHGDYYFYDVENVYERSLLETIDQSEFDGFEYINPLLMSSDDAV 1905
D+M +P+I+F+ LC+++RD+C F++E FTMKWIDEEGDPCT+S Q+EL+EA RLY +N +S+L+I+VF P++PGM GED+ +YRRGARRWRK+Y NGH+F A+RF + C IC D IWGLGRQG KC+NCK VHK+CH++V + CG H Q P+ + + +++H + + N S+ S + G K+ T++ + S +G+ DFD +RVIGRGSYAKV++VRLK+TDRIYAMKV+KKELVNDDEDIDWVQTEKHVFE ASNHPFLVGLHSCFQT SRLFFVIE+VNGGDLMFHMQR R+L E HARFY+AEIS ALNYLHE+GIIYRDLKLDNVLLD +GH+KLTDYGMCKEGL PG+ TSTFCGTPNYIAPEILRGEDY SVDWWALGVL++EM+AGRSPFDIV ++DNPDQNTEDYLFQVILEK IRIPRSLSV+AAS LK FLNK+P ERLGCHPQTGF+DI H FF+++DW+ ++++QV PPFKP + E L NFD QFT EPV LTPDD ++ IDQSEF+GFEYINPLLMS+++ V
Sbjct: 35 DIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHVFPCVPERPGMPCPGEDKSIYRRGARRWRKLYCANGHTFQAKRFNRRAHCAICTDRIWGLGRQGYKCINCKLLVHKKCHKLVTIECGRHSLPQEPVM----PMDQSSMHSDHAQTV---IPYNPSSHESLDQVGEEKEAMNTRESG---KASSSLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFG-LDNFDSQFTNEPVQLTPDD---------------------DDIVRKIDQSEFEGFEYINPLLMSAEECV 596 The following BLAST results are available for this feature:
BLAST of TCONS_00035296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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