TCONS_00035287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035287
Unique NameTCONS_00035287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035287 ID=TCONS_00035287|Name=TCONS_00035287|organism=Clytia hemisphaerica|type=transcript|length=459bp
agtACATGAATTTTCTGACATTAGATCCCCTTTTAAAGATTTCTTATGTG
ATTTCACGAGTGGTATTATTATTGAGGTGCTCAGTGATGAAGGGATGTGT
TTCGAGTGAAATATTCTATTGATAAGTTTGGTTAGATAGTCATTAAATAT
ATCGCTTGTTGCATATTTATAATGTTCTGATAGCAGTTGAAAAGGGTCAC
GTGACTTTCCAAGTTGTAGTTTATTGATGACTGAGATAATTTCATGTTGA
GATATGTAAAGATCACTTGAATCTATGTCTGTTTGTAGTTCGTGTAATAG
GTTTTTAAGTTCTTCATTCGATTGGTTATTGTCGATTGTGTCAATTCTTG
GTGTGTTTAGGAGTCTATCAAAGTGTTCTCCAAATTCATTTGATATGTCA
CTTTTGGTGGATTTGCCGTTCACTGTAAATagtttatgttgttttttctt
attGAGAAG
Run BLAST on NCBI

protein sequence of TCONS_00035287-protein

>TCONS_00035287-protein ID=TCONS_00035287-protein|Name=TCONS_00035287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
LLNKKKQHKLFTVNGKSTKSDISNEFGEHFDRLLNTPRIDTIDNNQSNEE
LKNLLHELQTDIDSSDLYISQHEIISVINKLQLGKSRDPFQLLSEHYKYA
TSDIFNDYLTKLINRIFHSKHIPSSLSTSIIIPLVKSHKKSLKGDLMSEN
SCT
Run BLAST on NCBI

transcript from alignment at sc0001286:20721..21179

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035287 ID=TCONS_00035287|Name=TCONS_00035287|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at sc0001286:20721..21179 (Clytia hemisphaerica)
CTTCTCaataagaaaaaacaacataaactATTTACAGTGAACGGCAAATC
CACCAAAAGTGACATATCAAATGAATTTGGAGAACACTTTGATAGACTCC
TAAACACACCAAGAATTGACACAATCGACAATAACCAATCGAATGAAGAA
CTTAAAAACCTATTACACGAACTACAAACAGACATAGATTCAAGTGATCT
TTACATATCTCAACATGAAATTATCTCAGTCATCAATAAACTACAACTTG
GAAAGTCACGTGACCCTTTTCAACTGCTATCAGAACATTATAAATATGCA
ACAAGCGATATATTTAATGACTATCTAACCAAACTTATCAATAGAATATT
TCACTCGAAACACATCCCTTCATCACTGAGCACCTCAATAATAATACCAC
TCGTGAAATCACATAAGAAATCTTTAAAAGGGGATCTAATGTCAGAAAAT
TCATGTact

Coding sequence (CDS) from alignment at sc0001286:20721..21179

>TCONS_00035287 ID=TCONS_00035287|Name=TCONS_00035287|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0001286:20721..21179 (Clytia hemisphaerica)
CTTCTCaataagaaaaaacaacataaactATTTACAGTGAACGGCAAATC
CACCAAAAGTGACATATCAAATGAATTTGGAGAACACTTTGATAGACTCC
TAAACACACCAAGAATTGACACAATCGACAATAACCAATCGAATGAAGAA
CTTAAAAACCTATTACACGAACTACAAACAGACATAGATTCAAGTGATCT
TTACATATCTCAACATGAAATTATCTCAGTCATCAATAAACTACAACTTG
GAAAGTCACGTGACCCTTTTCAACTGCTATCAGAACATTATAAATATGCA
ACAAGCGATATATTTAATGACTATCTAACCAAACTTATCAATAGAATATT
TCACTCGAAACACATCCCTTCATCACTGAGCACCTCAATAATAATACCAC
TCGTGAAATCACATAAGAAATCTTTAAAAGGGGATCTAATGTCAGAAAAT
TCATGTact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020598XLOC_020598Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035287-exon-sc0001286-1491911889:20721..21179TCONS_00035287-exon-sc0001286-1491911889:20721..21179Clytia hemisphaericaexon
TCONS_00035287-exon-sc0001286-1510915933:20721..21179TCONS_00035287-exon-sc0001286-1510915933:20721..21179Clytia hemisphaericaexon
TCONS_00035287-exon-sc0001286-1575043694:20721..21179TCONS_00035287-exon-sc0001286-1575043694:20721..21179Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035287-proteinTCONS_00035287-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001286supercontigsc0001286:20721..21179 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.149206	0.14987	0	0.604441	0.277826	0	0	0	0	1.13733	0	0.100698	0	0	0.802364	0	0	0	0	0	0.816106	1.33108	0.403947	0.298702	0.244281	0	0	0	0.667708
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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