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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035273 ID=TCONS_00035273|Name=TCONS_00035273|organism=Clytia hemisphaerica|type=transcript|length=795bp
agaaACTTTCGTGAATGCGTTATTTTGCGAAATGTatgtattcacaaaat
taactttcgcgaatctgaaaattgttatttttagtCGTGATatgagatga
tttttttttacgaaaataaactttcgcgaatttgccaagatttttttccg
cgaaagtttcttcctcTAACGTATGTATGCATTGATTTTTTAgtgaaaga
aaaatgtaaaacaaaataataaaatcaaagatAAAATTGAGATGAATTCA
GACTTGGAAATGTGTTGGAATGTCTTGCACGATTTCGTTTCGACTTCTGG
CTTTGGAATTTTTATCCTTGGTTGCTATggttaaaataaatcaaatggTC
TTCGGATTTTGCACCCAGCAAACAATGCAACGGCATGGAGACCGAAATTA
AAACCATAAAGGATTTTGGATATAACAGACATAATGTATTAAATTCCATG
TGAAACCTACGATTCTTTCATTTTACACATTCTTTGGCAATATGTCCCAA
GAGAACCGACGACGTGTGTGGGCCTTTTGTTCGTACCTCAACCTAACCTA
TCAAATGGGATTGCCTCGTTGTGTTGCAAAGTAGACCAAATTGACAGCTT
GGTGAAATAAATTGAAATGATGTTATAACTATTGACACtataaaaattca
aacaatttcGTGGAGAGTTGGAATATATTTACGATGGGTTGGATTCTTGC
TATAAAAGTTGAATAATTAACAGCAAAAGTTGGTATTACAAGTATTATAT
TATGattgaaattttataaattcTAGTTAcctttttaagtttaaa Run BLAST on NCBI transcript from alignment at sc0001281:37364..38793+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035273 ID=TCONS_00035273|Name=TCONS_00035273|organism=Clytia hemisphaerica|type=transcript|length=1430bp|location=Sequence derived from alignment at sc0001281:37364..38793+ (Clytia hemisphaerica)
agaaACTTTCGTGAATGCGTTATTTTGCGAAATGTatgtattcacaaaat
taactttcgcgaatctgaaaattgttatttttagtCGTGATatgagatga
tttttttttacgaaaataaactttcgcgaatttgccaagatttttttccg
cgaaagtttcttcctcTAACGTATGTATGCATTGATTTTTTAgtgaaaga
aaaatgtaaaacaaaataataaaatcaaagatAAAATTGAGATGAATTCA
GACTTGGAAATGTGTTGGAATGTCTTGCACGATTTCGTTTCGACTTCTGG
CTTTGGAATTTTTATCCTTGGTTGCTATggttaaaataaatcaaatggTC
TTCGGATTTTGGTATGTCATATTTGATAAAAGATTCACCCCATTAAGATT
TAGCAAATTAATTCTTCTACACTCTTTTCAaccgaaataaatttttttga
gtaAAATTAAGAAAACAAAGCAGTTTTTTAATTTGACATGATTTTATGCA
AGGCTTTACTCTTTGTCTAACAATTGAAcaatataatttatttttctata
gCACCCAGCAAACAATGCAACGGCATGGAGACCGAAATTAAAACCATAAA
GGATTTTGGATATAACAGACATAATGTATTAAATTCCATGTGAAACCTAC
GATTCTTTCATTTTACACATTCTTTGGCAATATGTCCCAAGGTAAGATAA
AATCTCTTTCACCTACTCTAATTTAAAGTGGATTAGTTTTgacggggatt
aaatttggcgaattttgacttagttcgcgaaattaaatccccgccaaaat
ttcaataatcGGTTATTCGCTAAATTAACTCCCTgttaaatttaacaaaa
agaatattattTGAATAATCAAACCTTTTCagtatatttcatattttagt
AACTTCCATCATATTTTACTGACTCTGAAttccaaatttgccaaattaaa
ttcctgccaatttttacaaaaatgatctatcgccaaattaagttcacGTC
TAAATTAATCTAATTTACCAGTAAATTTGTATTGTAATTTAAAGTTgcat
attcaaaattttatctctCGTTGAAAGCAACCATGACtagctttttttat
ttgacttatAACTTACTATCAATTTATTTCTTTTAGAGAACCGACGACGT
GTGTGGGCCTTTTGTTCGTACCTCAACCTAACCTATCAAATGGGATTGCC
TCGTTGTGTTGCAAAGTAGACCAAATTGACAGCTTGGTGAAATAAATTGA
AATGATGTTATAACTATTGACACtataaaaattcaaacaatttcGTGGAG
AGTTGGAATATATTTACGATGGGTTGGATTCTTGCTATAAAAGTTGAATA
ATTAACAGCAAAAGTTGGTATTACAAGTATTATATTATGattgaaatttt
ataaattcTAGTTAcctttttaagtttaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035273-exon-sc0001281-1491911889:37364..37724 | TCONS_00035273-exon-sc0001281-1491911889:37364..37724 | Clytia hemisphaerica | exon |
| TCONS_00035273-exon-sc0001281-1510915933:37364..37724 | TCONS_00035273-exon-sc0001281-1510915933:37364..37724 | Clytia hemisphaerica | exon |
| TCONS_00035273-exon-sc0001281-1575043694:37364..37724 | TCONS_00035273-exon-sc0001281-1575043694:37364..37724 | Clytia hemisphaerica | exon |
| TCONS_00035273-exon-sc0001281-1491911889:37915..38054 | TCONS_00035273-exon-sc0001281-1491911889:37915..38054 | Clytia hemisphaerica | exon |
| TCONS_00035273-exon-sc0001281-1510915933:37915..38054 | TCONS_00035273-exon-sc0001281-1510915933:37915..38054 | Clytia hemisphaerica | exon |
| TCONS_00035273-exon-sc0001281-1575043694:37915..38054 | TCONS_00035273-exon-sc0001281-1575043694:37915..38054 | Clytia hemisphaerica | exon |
| TCONS_00035273-exon-sc0001281-1491911889:38500..38793 | TCONS_00035273-exon-sc0001281-1491911889:38500..38793 | Clytia hemisphaerica | exon |
| TCONS_00035273-exon-sc0001281-1510915933:38500..38793 | TCONS_00035273-exon-sc0001281-1510915933:38500..38793 | Clytia hemisphaerica | exon |
| TCONS_00035273-exon-sc0001281-1575043694:38500..38793 | TCONS_00035273-exon-sc0001281-1575043694:38500..38793 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001281 | supercontig | sc0001281:37364..38793 + |
Blast
The following BLAST results are available for this feature:
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