TCONS_00035203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035203
Unique NameTCONS_00035203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035203 ID=TCONS_00035203|Name=TCONS_00035203|organism=Clytia hemisphaerica|type=transcript|length=258bp
AATGGTGGAAGAATTGCAGGAGTTGAGCAACTGCGCCATGTACATTCACA
ACGAAGAAAAGCATTGTCAGGCAAAAGTTCTCCAGTTTGTACACGATTTT
CCAGCGATTGCTAAAGTCATGTATACCCAAGCACAAGGTGGTTTGAGGGC
ATGTCCCTTGTGCAAAAGCGTTGGTGAGCATTGCAAACATCTAAGCAAAA
CGGTATATTTGGGTAATCGAAAATTCCTCCCTGAAGACTCCGACCTTAGA
AAGTCCAC
Run BLAST on NCBI

transcript from alignment at sc0001273:9116..9732-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035203 ID=TCONS_00035203|Name=TCONS_00035203|organism=Clytia hemisphaerica|type=transcript|length=617bp|location=Sequence derived from alignment at sc0001273:9116..9732- (Clytia hemisphaerica)
AATGGTGGAAGAATTGCAGGAGTTGAGCAACTGCGCCATGTACATTCACA
ACGAAGAAAAGCATTGTCAGGCAAAAGTTCTCCAGTTTGTACACGATTTT
CCAGCGATTGCTAAAGTCATGTATACCCAAGCACAAGGTAAGAAAATATG
TAACTATCAACATAATGCAGATGGGAATCCGGAATTTTCAAATTTTAGGT
GGAGATAATAGGATAAGTCGGCGGGACTAAAGTCTCAATTGTGGTTAACT
TTGTTGCAGCAAGCCGTTTTCAAATGTAATTTACTATTATTTCGATCTTT
GACAAAACATAATTTTAAATATTTGGTGTGAGGCAGGTGAATGGCAAAAT
AAATGGCAAAATTTTCGCCTGTGGTGCCATCTTCAACTTTTTACATGTAA
TTTAGTTTTGATTGGCTTGTGAACCGGTGCAGACTTTAACTTCAAGACCC
TATGACGAAACCCTTATTTAAATTCATTATTTTTTCATTTGGGTAGGTGG
TTTGAGGGCATGTCCCTTGTGCAAAAGCGTTGGTGAGCATTGCAAACATC
TAAGCAAAACGGTATATTTGGGTAATCGAAAATTCCTCCCTGAAGACTCC
GACCTTAGAAAGTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020537XLOC_020537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035203-exon-sc0001273-1575043694:9596..9732TCONS_00035203-exon-sc0001273-1575043694:9596..9732Clytia hemisphaericaexon
TCONS_00035203-exon-sc0001273-1575043694:9116..9236TCONS_00035203-exon-sc0001273-1575043694:9116..9236Clytia hemisphaericaexon
TCONS_00035203-exon-sc0001273-1510915933:9596..9732TCONS_00035203-exon-sc0001273-1510915933:9596..9732Clytia hemisphaericaexon
TCONS_00035203-exon-sc0001273-1510915933:9116..9236TCONS_00035203-exon-sc0001273-1510915933:9116..9236Clytia hemisphaericaexon
TCONS_00035203-exon-sc0001273-1491911889:9596..9732TCONS_00035203-exon-sc0001273-1491911889:9596..9732Clytia hemisphaericaexon
TCONS_00035203-exon-sc0001273-1491911889:9116..9236TCONS_00035203-exon-sc0001273-1491911889:9116..9236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001273supercontigsc0001273:9116..9732 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.814597	0.800499	0	0	1.77226	2.23252	0.82434	3.06072	3.87106	1.42581	9.3246	6.83095	8.41808	2.97058	0.915677	0	5.81775	0	0	0	0	1.67465	1.1116
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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