TCONS_00035174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035174
Unique NameTCONS_00035174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length887

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035174 ID=TCONS_00035174|Name=TCONS_00035174|organism=Clytia hemisphaerica|type=transcript|length=887bp
TACTACAAAGATTTGATCGGACCGTGTCTTCCTCTAGTGAGAGAAGAAAT
ACTTGCtgatgaaattttttatgtAGTGTCGGATAAAAGTGTAAATGTAA
CTGGCTGGTGTTGGCTGTGTTTCAGATCCTCGTGACAGTGAAACAACAAC
AAATCATAATACGAGTAGTGTTAGTGGTATTAACTTACTGGATGAGACTA
ATCACCAACAGAACATTTCAATCTTTATTGGATTCAACATCCATGGGAAA
AAGGAAAGATCACAGTTTTATCATCAGTGACGACAACttatttcaattct
tcaaaGTACTACACCACAATAAGAAATGATaactttctttcaaatgttgC
AAAAATTTGACGTAAAATAACGaaGCTTAGAAATCGGAAGAAGGTGCTAA
AAGCGAAGACGACTATCTCTGACGTCGATAAAATGAAAAGGAGGACTCGA
GGTTTAACCACTGAGATGGCGTTTGCAAAAATGTGATAAGTACTTTGAAG
CGTTGGataaaaagacaatgacaaaGCGATCGATAAAAGCGCGAAGACAA
ACTGTTATACGCAAGATGGGGCCTTTCAGTGGAAGGGCAGCACCTGAGGT
TGACGAATCAAATGCATGgacaataataaataaataaacctTTAACCTAT
TCATTTTGTTATAATTATGTtactattttagtttaatgtttcttttgttt
gagattttctttagcttgatatttttatttatttcagttAATTAATAGCC
CCTCTTCCCCTGGGCAGTAGACATGCTTGTAAGAAAATCAATATGGAAAG
GCTTTTTAGCCACTTGTTGaatacacgtttgtttttttttaagaaactag
ttttaccaagcagcctcaatgtttcttaagaaattgg
Run BLAST on NCBI

transcript from alignment at sc0001268:62053..64568-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035174 ID=TCONS_00035174|Name=TCONS_00035174|organism=Clytia hemisphaerica|type=transcript|length=2516bp|location=Sequence derived from alignment at sc0001268:62053..64568- (Clytia hemisphaerica)
TACTACAAAGATTTGATCGGACCGTGTCTTCCTCTAGTGAGAGAAGAAAT
ACTTGCTGATGAAATTTTTTATGTAGTGTCGGATAAAAGTGTAAATGTAA
CTGGCTGGTGTTGGCTGTGTTTCAGATCCTCGTGACAGTGAAACAACAAC
AAATCATAATACGAGTAGTGTTAGTGGTATTAACTTACTGGATGAGACTA
ATCACCAACAGTAAGTTGTTTTAATTGATTGTTTGATGGTGTGTGCTTGT
CTTAAATCTGTTAGTTGAAAAAATCTCTGCGTTAAAACATGAACTCTTTT
CCTGCTTAAACTTGAATTTTTTTGTTTTAAATCAACTTCTACGAGCCTGA
TTACATAGTTCAATTGTTTATCGATTTATATTTATTTTTTCTTAATCATT
TATCGATCGAGAATATCTGAGATAAAAACCTCTTGTACTTTTAAATTCTG
AAATTACGAAAAACTTAATCTGTTAATTGATCTCTTGAGCTAGTAGAAAA
GTTTGCCTTATCTATCAAGTTTATGGTAGTCGAGAACGAGGGGTGGATCA
TCTGGAAAATTTGTACAAGATTTTGTTGATTTTATGTGATGTGTTATTTT
TTTGTGATTTATCTGTGATGTTTTGCGAATTTTAACGTTTTTGTGATTTT
AGAATTTTTTTCCAGTGGTTTACACCTCGATCTAGAATTCTCCTTATCTT
ACACTCATCGTATTATTCAAAAGTAAAGATGCAGGATTCTAATGAGTTTA
ATTTAATTATTTTTAAGATAGTTGAATGTGACTCCAAATTGTGTTGCTGA
TTCTAATCCACCTGTAACTGGTATGTTTGGAATAACAATTTTTCCTTCAC
TCAGCATTGATAAATAACTCACCATTGATAACTCAGCATTCTTTCTGTAA
ATAATTATTTTGGCCTTTCATTTGCATTTTAGGTGCCTGTGATATTGAAT
TTTCCTAAACTCGCATAAAATTTAGATTTCTTAATGATCGTATTGATGTA
ACAAATTTGTTGGATGTGTATATTTCTGAATATATATTTTTTAATATATA
GGAACATTTCAATCTTTATTGGATTCAACATCCATGGGAAAAAGGAAAGA
TCACAGTTTTATGTAAGTGAATACAAATGAAGTCATTTTTAAAATATTAG
AAGAATAGTTATAATTCCATTTCATAAAAGAGTAATTGAGATTTATTTGT
TGTATTTATTGTTTTTATTATAAACAGAGAATGGTTGAGATATCTCTTTT
TTATTTTCATTTTTTTATATTGCTGCCTTTGAATTAATATGCAAATGGTT
GAATAGAAAAGGAATTTTTTGATTTAGTGAGAGGAAATTAATTAGATGTT
AGTAATTTTGTCTCATCTTCAGTTATCTTCAAAAAGTACCATAATGAATA
TTCATTCCCTCTTTTTCAATCTCAGCATCAGTGACGACAACTTATTTCAA
TTCTTCAAAGTACTACACCACAATAAGAAATGATAACTTTCTTTCAAATG
TTGCAAAAATTTGACGTAAAATAACGGTAAGAGGCCTTATGCTTAAAATC
TATTAACTATACTGTGTTCTTTCATTTTCATATAAACAATAGATTGATGT
AATGACGTGGCCATCCATCTTTGTGGGCATAATATCACAATAGCTGAAGC
TTTCTGTATTGAAACCGTTATAACACGTATTTGAAAAACATATATGTTAG
GCTTTTTTATAGATTTACCGGGGGTCTTACTTGAAAGTTGTTGTGCGCAA
AAATTTGCCTGCAATGATAATAGCTGAACACTTTGAAGAAGTTCGGAAAA
CATTAAATCACAGATTTCGTTCAATAGTACTTTATCTTTTCAACCTGAAT
TACTTTTCAACTTTTACAGTATTACTTCAATCATTTTTGTCTTTTTCCTT
TTTTCAGAAGCTTAGAAATCGGAAGAAGGTNTTTCAACCTGCATTACTTT
TCAGCTTTTACAGTATTACTTCAATCATTTTTGTCTTTTTCCTTTTTTCA
GAAGCTTAGAAATCGGAAGAAGGTGCTAAAAGCGAAGACGACTATCTCTG
ACGTCGATAAAATGAAAAGGAGGACTCGAGGTTTAACCACTGAGATGGCG
TTTGCAAAAATGTGATAAGTACTTTGAAGCGTTGGATAAAAAGACAATGA
CAAAGCGATCGATAAAAGCGCGAAGACAAACTGTTATACGCAAGATGGGG
CCTTTCAGTGGAAGGGCAGCACCTGAGGTTGACGAATCAAATGCATGGAC
AATAATAAATAAATAAACCTTTAACCTATTCATTTTGTTATAATTATGTT
ACTATTTTAGTTTAATGTTTCTTTTGTTTGAGATTTTCTTTAGCTTGATA
TTTTTATTTATTTCAGTTAATTAATAGCCCCTCTTCCCCTGGGCAGTAGA
CATGCTTGTAAGAAAATCAATATGGAAAGGCTTTTTAGCCACTTGTTGAA
TACACGTTTGTTTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCTCAATG
TTTCTTAAGAAATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020516XLOC_020516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035174-exon-sc0001268-1575043694:64359..64568TCONS_00035174-exon-sc0001268-1575043694:64359..64568Clytia hemisphaericaexon
TCONS_00035174-exon-sc0001268-1575043694:63457..63517TCONS_00035174-exon-sc0001268-1575043694:63457..63517Clytia hemisphaericaexon
TCONS_00035174-exon-sc0001268-1575043694:63043..63143TCONS_00035174-exon-sc0001268-1575043694:63043..63143Clytia hemisphaericaexon
TCONS_00035174-exon-sc0001268-1575043694:62053..62567TCONS_00035174-exon-sc0001268-1575043694:62053..62567Clytia hemisphaericaexon
TCONS_00035174-exon-sc0001268-1510915933:64359..64568TCONS_00035174-exon-sc0001268-1510915933:64359..64568Clytia hemisphaericaexon
TCONS_00035174-exon-sc0001268-1510915933:63457..63517TCONS_00035174-exon-sc0001268-1510915933:63457..63517Clytia hemisphaericaexon
TCONS_00035174-exon-sc0001268-1510915933:63043..63143TCONS_00035174-exon-sc0001268-1510915933:63043..63143Clytia hemisphaericaexon
TCONS_00035174-exon-sc0001268-1510915933:62053..62567TCONS_00035174-exon-sc0001268-1510915933:62053..62567Clytia hemisphaericaexon
TCONS_00035174-exon-sc0001268-1491911889:64359..64568TCONS_00035174-exon-sc0001268-1491911889:64359..64568Clytia hemisphaericaexon
TCONS_00035174-exon-sc0001268-1491911889:63457..63517TCONS_00035174-exon-sc0001268-1491911889:63457..63517Clytia hemisphaericaexon
TCONS_00035174-exon-sc0001268-1491911889:63043..63143TCONS_00035174-exon-sc0001268-1491911889:63043..63143Clytia hemisphaericaexon
TCONS_00035174-exon-sc0001268-1491911889:62053..62567TCONS_00035174-exon-sc0001268-1491911889:62053..62567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001268supercontigsc0001268:62053..64568 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.156518	0.0887211	0.0745153	0.147719	2.45619	0	0.488802	1.57975	0.996572	2.33673	0	0.258132	0.239052	0.138487	0.133562	0	0	0.123902	0	0.39765	0.675215	0	1.00248	0.476316	0.147073	0.264213	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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