TCONS_00035173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035173
Unique NameTCONS_00035173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length900

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035173 ID=TCONS_00035173|Name=TCONS_00035173|organism=Clytia hemisphaerica|type=transcript|length=900bp
CAAAGATTTGATCGGACCGTGTCTTCCTCTAGTGAGAGAAGAAATACTTG
CtgatgaaattttttatgtAGTGTCGGATAAAAGTGTAAATGTAACTGGC
TGGTGTTGGCTGTGTTTCAGATCCTCGTGACAGTGAAACAACAACAAATC
ATAATACGAGTAGTGTTAGTGGTATTAACTTACTGGATGAGACTAATCAC
CAACAatAGTTGAATGTGACTCCAAATTGTGTTGCTGATTCTAATCCACC
TGTAACTGGAACATTTCAATCTTTATTGGATTCAACATCCATGGGAAAAA
GGAAAGATCACAGTTTTATTACTACACCACAATAAGAAATGATaactttc
tttcaaatgttgCAAAAATTTGACGTAAAATAACGaaGCTTAGAAATCGG
AAGAAGGTGCTAAAAGCGAAGACGACTATCTCTGACGTCGATAAAATGAA
AAGGAGGACTCGAGGTTTAACCACTGAGATGGCGTTTGCAAAAATGTGAT
AAGTACTTTGAAGCGTTGGataaaaagacaatgacaaaGCGATCGATAAA
AGCGCGAAGACAAACTGTTATACGCAAGATGGGGCCTTTCAGTGGAAGGG
CAGCACCTGAGGTTGACGAATCAAATGCATGgacaataataaataaataa
acctTTAACCTATTCATTTTGTTATAATTATGTtactattttagtttaat
gtttcttttgtttgagattttctttagcttgatatttttatttatttcag
ttAATTAATAGCCCCTCTTCCCCTGGGCAGTAGACATGCTTGTAAGAAAA
TCAATATGGAAAGGCTTTTTAGCCACTTGTTGaatacacgtttgtttttt
tttaagaaactagttttaccaagcagcctcaatgtttcttaagaaattgg
Run BLAST on NCBI

transcript from alignment at sc0001268:62053..64563-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035173 ID=TCONS_00035173|Name=TCONS_00035173|organism=Clytia hemisphaerica|type=transcript|length=2511bp|location=Sequence derived from alignment at sc0001268:62053..64563- (Clytia hemisphaerica)
CAAAGATTTGATCGGACCGTGTCTTCCTCTAGTGAGAGAAGAAATACTTG
CTGATGAAATTTTTTATGTAGTGTCGGATAAAAGTGTAAATGTAACTGGC
TGGTGTTGGCTGTGTTTCAGATCCTCGTGACAGTGAAACAACAACAAATC
ATAATACGAGTAGTGTTAGTGGTATTAACTTACTGGATGAGACTAATCAC
CAACAGTAAGTTGTTTTAATTGATTGTTTGATGGTGTGTGCTTGTCTTAA
ATCTGTTAGTTGAAAAAATCTCTGCGTTAAAACATGAACTCTTTTCCTGC
TTAAACTTGAATTTTTTTGTTTTAAATCAACTTCTACGAGCCTGATTACA
TAGTTCAATTGTTTATCGATTTATATTTATTTTTTCTTAATCATTTATCG
ATCGAGAATATCTGAGATAAAAACCTCTTGTACTTTTAAATTCTGAAATT
ACGAAAAACTTAATCTGTTAATTGATCTCTTGAGCTAGTAGAAAAGTTTG
CCTTATCTATCAAGTTTATGGTAGTCGAGAACGAGGGGTGGATCATCTGG
AAAATTTGTACAAGATTTTGTTGATTTTATGTGATGTGTTATTTTTTTGT
GATTTATCTGTGATGTTTTGCGAATTTTAACGTTTTTGTGATTTTAGAAT
TTTTTTCCAGTGGTTTACACCTCGATCTAGAATTCTCCTTATCTTACACT
CATCGTATTATTCAAAAGTAAAGATGCAGGATTCTAATGAGTTTAATTTA
ATTATTTTTAAGATAGTTGAATGTGACTCCAAATTGTGTTGCTGATTCTA
ATCCACCTGTAACTGGTATGTTTGGAATAACAATTTTTCCTTCACTCAGC
ATTGATAAATAACTCACCATTGATAACTCAGCATTCTTTCTGTAAATAAT
TATTTTGGCCTTTCATTTGCATTTTAGGTGCCTGTGATATTGAATTTTCC
TAAACTCGCATAAAATTTAGATTTCTTAATGATCGTATTGATGTAACAAA
TTTGTTGGATGTGTATATTTCTGAATATATATTTTTTAATATATAGGAAC
ATTTCAATCTTTATTGGATTCAACATCCATGGGAAAAAGGAAAGATCACA
GTTTTATGTAAGTGAATACAAATGAAGTCATTTTTAAAATATTAGAAGAA
TAGTTATAATTCCATTTCATAAAAGAGTAATTGAGATTTATTTGTTGTAT
TTATTGTTTTTATTATAAACAGAGAATGGTTGAGATATCTCTTTTTTATT
TTCATTTTTTTATATTGCTGCCTTTGAATTAATATGCAAATGGTTGAATA
GAAAAGGAATTTTTTGATTTAGTGAGAGGAAATTAATTAGATGTTAGTAA
TTTTGTCTCATCTTCAGTTATCTTCAAAAAGTACCATAATGAATATTCAT
TCCCTCTTTTTCAATCTCAGCATCAGTGACGACAACTTATTTCAATTCTT
CAAAGTACTACACCACAATAAGAAATGATAACTTTCTTTCAAATGTTGCA
AAAATTTGACGTAAAATAACGGTAAGAGGCCTTATGCTTAAAATCTATTA
ACTATACTGTGTTCTTTCATTTTCATATAAACAATAGATTGATGTAATGA
CGTGGCCATCCATCTTTGTGGGCATAATATCACAATAGCTGAAGCTTTCT
GTATTGAAACCGTTATAACACGTATTTGAAAAACATATATGTTAGGCTTT
TTTATAGATTTACCGGGGGTCTTACTTGAAAGTTGTTGTGCGCAAAAATT
TGCCTGCAATGATAATAGCTGAACACTTTGAAGAAGTTCGGAAAACATTA
AATCACAGATTTCGTTCAATAGTACTTTATCTTTTCAACCTGAATTACTT
TTCAACTTTTACAGTATTACTTCAATCATTTTTGTCTTTTTCCTTTTTTC
AGAAGCTTAGAAATCGGAAGAAGGTNTTTCAACCTGCATTACTTTTCAGC
TTTTACAGTATTACTTCAATCATTTTTGTCTTTTTCCTTTTTTCAGAAGC
TTAGAAATCGGAAGAAGGTGCTAAAAGCGAAGACGACTATCTCTGACGTC
GATAAAATGAAAAGGAGGACTCGAGGTTTAACCACTGAGATGGCGTTTGC
AAAAATGTGATAAGTACTTTGAAGCGTTGGATAAAAAGACAATGACAAAG
CGATCGATAAAAGCGCGAAGACAAACTGTTATACGCAAGATGGGGCCTTT
CAGTGGAAGGGCAGCACCTGAGGTTGACGAATCAAATGCATGGACAATAA
TAAATAAATAAACCTTTAACCTATTCATTTTGTTATAATTATGTTACTAT
TTTAGTTTAATGTTTCTTTTGTTTGAGATTTTCTTTAGCTTGATATTTTT
ATTTATTTCAGTTAATTAATAGCCCCTCTTCCCCTGGGCAGTAGACATGC
TTGTAAGAAAATCAATATGGAAAGGCTTTTTAGCCACTTGTTGAATACAC
GTTTGTTTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCTCAATGTTTCT
TAAGAAATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020516XLOC_020516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035173-exon-sc0001268-1575043694:64359..64563TCONS_00035173-exon-sc0001268-1575043694:64359..64563Clytia hemisphaericaexon
TCONS_00035173-exon-sc0001268-1575043694:63749..63801TCONS_00035173-exon-sc0001268-1575043694:63749..63801Clytia hemisphaericaexon
TCONS_00035173-exon-sc0001268-1575043694:63457..63517TCONS_00035173-exon-sc0001268-1575043694:63457..63517Clytia hemisphaericaexon
TCONS_00035173-exon-sc0001268-1575043694:63043..63108TCONS_00035173-exon-sc0001268-1575043694:63043..63108Clytia hemisphaericaexon
TCONS_00035173-exon-sc0001268-1575043694:62053..62567TCONS_00035173-exon-sc0001268-1575043694:62053..62567Clytia hemisphaericaexon
TCONS_00035173-exon-sc0001268-1510915933:64359..64563TCONS_00035173-exon-sc0001268-1510915933:64359..64563Clytia hemisphaericaexon
TCONS_00035173-exon-sc0001268-1510915933:63749..63801TCONS_00035173-exon-sc0001268-1510915933:63749..63801Clytia hemisphaericaexon
TCONS_00035173-exon-sc0001268-1510915933:63457..63517TCONS_00035173-exon-sc0001268-1510915933:63457..63517Clytia hemisphaericaexon
TCONS_00035173-exon-sc0001268-1510915933:63043..63108TCONS_00035173-exon-sc0001268-1510915933:63043..63108Clytia hemisphaericaexon
TCONS_00035173-exon-sc0001268-1510915933:62053..62567TCONS_00035173-exon-sc0001268-1510915933:62053..62567Clytia hemisphaericaexon
TCONS_00035173-exon-sc0001268-1491911889:64359..64563TCONS_00035173-exon-sc0001268-1491911889:64359..64563Clytia hemisphaericaexon
TCONS_00035173-exon-sc0001268-1491911889:63749..63801TCONS_00035173-exon-sc0001268-1491911889:63749..63801Clytia hemisphaericaexon
TCONS_00035173-exon-sc0001268-1491911889:63457..63517TCONS_00035173-exon-sc0001268-1491911889:63457..63517Clytia hemisphaericaexon
TCONS_00035173-exon-sc0001268-1491911889:63043..63108TCONS_00035173-exon-sc0001268-1491911889:63043..63108Clytia hemisphaericaexon
TCONS_00035173-exon-sc0001268-1491911889:62053..62567TCONS_00035173-exon-sc0001268-1491911889:62053..62567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001268supercontigsc0001268:62053..64563 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.148028	0.0937715	0	0	0	0	0	0	0	0	0.554598	1.11214	0.184434	1.42397	0.0226359	0.529795	0.0978851	0.36926	0.0379385	1.30622	0.0656909	1.13231	0.344184	0.6978	0	0	0	0	0	0.0136989
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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