TCONS_00035107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035107
Unique NameTCONS_00035107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length706

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035107 ID=TCONS_00035107|Name=TCONS_00035107|organism=Clytia hemisphaerica|type=transcript|length=706bp
CACTGTCGTTGTTGGTGTATTGCGTTGTTGCACGATTGGCTTCGTAGAAA
GACAAGGAAGGGTATGACCAGTGAACACATCGCGGGTGATGTTGACAGAA
GCAGGTTCGAACCGTCTGAGGAAGCGTCTGTTACGTCTTGTAAGGCGACC
AGTACCATCGACTCTCAGAGTGTAGCTGTCGTGACCATGGATTTCGACAA
CCGTACCTGAACGATCCCATCGCTTTGGGTTGTTTCCGTACTGGTTTTGA
ATGTAGCATCGGTCATGAAGATGAAGACTTGGTAGGGAGCGAGAGTGGAG
GTTTCGTTCTTCTGCTGCATGGTGGAACCTTTGACGCAGTGCTTCTTCCT
TCTGCTGCCATGCCTCGCGCCAAATTGGACGAATGTGTTTGTTGCTAAAT
TTTTCGAGCCGATTAACGAATGCGAAGGCATCTCGGATAGGCCGACCAAA
CACAATCTCTGCAGGTGATAGTTGGCAGTCAGGATCTGGTGTATTGCGTA
GCTGCATCATTGCCCTCAAAAAGCGATCAGTGTCGAGGGTTCCTGCTGGT
CCAGTGTTGGCGCGGAGTAGTCGCTTGGCTGATTTGACAGCAACCTCGGC
ACGACCATTTGACTGTGGATAGTGGGCGGACGAGATTCTGTGCTTCACTC
CCCATCGGTTGAGGAAATCTTGGGTTGCGTTTGAGGTAAATTCGGGGCCT
CCATCG
Run BLAST on NCBI

protein sequence of TCONS_00035107-protein

>TCONS_00035107-protein ID=TCONS_00035107-protein|Name=TCONS_00035107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
DGGPEFTSNATQDFLNRWGVKHRISSAHYPQSNGRAEVAVKSAKRLLRAN
TGPAGTLDTDRFLRAMMQLRNTPDPDCQLSPAEIVFGRPIRDAFAFVNRL
EKFSNKHIRPIWREAWQQKEEALRQRFHHAAEERNLHSRSLPSLHLHDRC
YIQNQYGNNPKRWDRSGTVVEIHGHDSYTLRVDGTGRLTRRNRRFLRRFE
PASVNITRDVFTGHTLPCLSTKPIVQQRNTPTTTV
Run BLAST on NCBI

transcript from alignment at sc0001252:41846..42551

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035107 ID=TCONS_00035107|Name=TCONS_00035107|organism=Clytia hemisphaerica|type=transcript|length=706bp|location=Sequence derived from alignment at sc0001252:41846..42551 (Clytia hemisphaerica)
CGATGGAGGCCCCGAATTTACCTCAAACGCAACCCAAGATTTCCTCAACC
GATGGGGAGTGAAGCACAGAATCTCGTCCGCCCACTATCCACAGTCAAAT
GGTCGTGCCGAGGTTGCTGTCAAATCAGCCAAGCGACTACTCCGCGCCAA
CACTGGACCAGCAGGAACCCTCGACACTGATCGCTTTTTGAGGGCAATGA
TGCAGCTACGCAATACACCAGATCCTGACTGCCAACTATCACCTGCAGAG
ATTGTGTTTGGTCGGCCTATCCGAGATGCCTTCGCATTCGTTAATCGGCT
CGAAAAATTTAGCAACAAACACATTCGTCCAATTTGGCGCGAGGCATGGC
AGCAGAAGGAAGAAGCACTGCGTCAAAGGTTCCACCATGCAGCAGAAGAA
CGAAACCTCCACTCTCGCTCCCTACCAAGTCTTCATCTTCATGACCGATG
CTACATTCAAAACCAGTACGGAAACAACCCAAAGCGATGGGATCGTTCAG
GTACGGTTGTCGAAATCCATGGTCACGACAGCTACACTCTGAGAGTCGAT
GGTACTGGTCGCCTTACAAGACGTAACAGACGCTTCCTCAGACGGTTCGA
ACCTGCTTCTGTCAACATCACCCGCGATGTGTTCACTGGTCATACCCTTC
CTTGTCTTTCTACGAAGCCAATCGTGCAACAACGCAATACACCAACAACG
ACAGTG

Coding sequence (CDS) from alignment at sc0001252:41846..42551

>TCONS_00035107 ID=TCONS_00035107|Name=TCONS_00035107|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at sc0001252:41846..42551 (Clytia hemisphaerica)
GATGGAGGCCCCGAATTTACCTCAAACGCAACCCAAGATTTCCTCAACCG
ATGGGGAGTGAAGCACAGAATCTCGTCCGCCCACTATCCACAGTCAAATG
GTCGTGCCGAGGTTGCTGTCAAATCAGCCAAGCGACTACTCCGCGCCAAC
ACTGGACCAGCAGGAACCCTCGACACTGATCGCTTTTTGAGGGCAATGAT
GCAGCTACGCAATACACCAGATCCTGACTGCCAACTATCACCTGCAGAGA
TTGTGTTTGGTCGGCCTATCCGAGATGCCTTCGCATTCGTTAATCGGCTC
GAAAAATTTAGCAACAAACACATTCGTCCAATTTGGCGCGAGGCATGGCA
GCAGAAGGAAGAAGCACTGCGTCAAAGGTTCCACCATGCAGCAGAAGAAC
GAAACCTCCACTCTCGCTCCCTACCAAGTCTTCATCTTCATGACCGATGC
TACATTCAAAACCAGTACGGAAACAACCCAAAGCGATGGGATCGTTCAGG
TACGGTTGTCGAAATCCATGGTCACGACAGCTACACTCTGAGAGTCGATG
GTACTGGTCGCCTTACAAGACGTAACAGACGCTTCCTCAGACGGTTCGAA
CCTGCTTCTGTCAACATCACCCGCGATGTGTTCACTGGTCATACCCTTCC
TTGTCTTTCTACGAAGCCAATCGTGCAACAACGCAATACACCAACAACGA
CAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020453XLOC_020453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035107-exon-sc0001252-1491911889:41846..42551TCONS_00035107-exon-sc0001252-1491911889:41846..42551Clytia hemisphaericaexon
TCONS_00035107-exon-sc0001252-1510915933:41846..42551TCONS_00035107-exon-sc0001252-1510915933:41846..42551Clytia hemisphaericaexon
TCONS_00035107-exon-sc0001252-1575043694:41846..42551TCONS_00035107-exon-sc0001252-1575043694:41846..42551Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035107-proteinTCONS_00035107-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001252supercontigsc0001252:41846..42551 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.927989	0.208831	0.161649	0.474444	0.288795	0.760699	0.18355	0.515513	0.120307	0.22353	0.289285	0.475412	0.379801	0.0493034	1.29709	0.869985	0.910988	0.659106	0.455295	1.50871	1.51839	0.908942	0.90032	0.520877	0.536491	0.410405	0	0.208923	0.158461	0.161447
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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