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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034982 ID=TCONS_00034982|Name=TCONS_00034982|organism=Clytia hemisphaerica|type=transcript|length=4064bpRun BLAST on NCBI protein sequence of TCONS_00034982-protein >TCONS_00034982-protein ID=TCONS_00034982-protein|Name=TCONS_00034982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=789bp MPFAELAYDDFEFFEKLGDGSFGSVYRGRWKSQDKEVAIKKILTLGEEADRun BLAST on NCBI transcript from alignment at sc0001237:45311..60300- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00034982 ID=TCONS_00034982|Name=TCONS_00034982|organism=Clytia hemisphaerica|type=transcript|length=14990bp|location=Sequence derived from alignment at sc0001237:45311..60300- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001237:45311..60300- >TCONS_00034982 ID=TCONS_00034982|Name=TCONS_00034982|organism=Clytia hemisphaerica|type=CDS|length=40290bp|location=Sequence derived from alignment at sc0001237:45311..60300- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00034982 vs. Swiss-Prot (Human)
Match: M3K20 (Mitogen-activated protein kinase kinase kinase 20 OS=Homo sapiens GN=MAP3K20 PE=1 SV=3) HSP 1 Score: 542.732 bits (1397), Expect = 2.579e-174 Identity = 272/527 (51.61%), Postives = 366/527 (69.45%), Query Frame = 2
Query: 149 FAELAYDDFEFFEKLGDGSFGSVYRGRWKSQDKEVAIKKILTLGEEADVLCVLSHKHIIQFYGAVSQKPNFCLITEYARFGSLYDYIAKNK---LDFHQILSWSKQIALGLSYLHNEAPFKIIHRDLKSKNIVITGDMLVKLCDFGSSRYLDQTTKMSMAGTFPWMAPEVIQSMPVSETCDTYSYGIVLWEMLTGEIPFKGMEGVQVAWLVVVKEERLTIPSSCPVEFAKLLKSCWLKDPKARPFFHEMQNILGRMCVDNELEEATNHFLNAKLDWKYEIEMTIERLKKVERNLTSKEKELQDREMRVLQKERKM---NISKRLNKMRLSEWATTDVLIWMEQL---GNEAVDLYQYAQVFLENHINGRRLIQLTDADLKEMNILSYGHRMDLLAQIAKLTEELEHLSHFPPLQKVPSKEDDCAQHKCVNLTLLFGNHCRLGPTPMDHKWKVYVEVDGDEDVLTAIKEVTLKST---EEQVVMTQQPFVMSKWKTAGHDNSPIFVDILVSYESHVKKPKQTKHTHEV 1693
F ++ +DD +FFE G GSFGSVYR +W SQDKEVA+KK+L + +EA++L VLSH++IIQFYG + + PN+ ++TEYA GSLYDYI N+ +D I++W+ +A G+ YLH EAP K+IHRDLKS+N+VI D ++K+CDFG+SR+ + TT MS+ GTFPWMAPEVIQS+PVSETCDTYSYG+VLWEMLT E+PFKG+EG+QVAWLVV K ERLTIPSSCP FA+LL CW D K RP F ++ +IL M D L + N FL+ K +W+ EIE T+ERLKK+ER+L+ KE+EL++RE R+ E+K+ + + L + W DV W++QL G+ + ++ YA +F EN+I G+RL+ L + DLK+M I+S GH + + I KLT + +L HFPPL K E + + K VNL L+FG H + G P D KWK+Y+E+DGDE +T IK+VT + E + MT+ PFVM KW G S V+ V+YES V+ PK TKH H +
Sbjct: 8 FVQIKFDDLQFFENCGGGSFGSVYRAKWISQDKEVAVKKLLKIEKEAEILSVLSHRNIIQFYGVILEPPNYGIVTEYASLGSLYDYINSNRSEEMDMDHIMTWATDVAKGMHYLHMEAPVKVIHRDLKSRNVVIAADGVLKICDFGASRFHNHTTHMSLVGTFPWMAPEVIQSLPVSETCDTYSYGVVLWEMLTREVPFKGLEGLQVAWLVVEKNERLTIPSSCPRSFAELLHQCWEADAKKRPSFKQIISILESMSNDTSLPDKCNSFLHNKAEWRCEIEATLERLKKLERDLSFKEQELKERERRLKMWEQKLTEQSNTPLLPSFEIGAWTEDDVYCWVQQLVRKGDSSAEMSVYASLFKENNITGKRLLLLEEEDLKDMGIVSKGHIIHFKSAIEKLTHDYINLFHFPPLIKDSGGEPEENEEKIVNLELVFGFHLKPGTGPQDCKWKMYMEMDGDEIAITYIKDVTFNTNLPDAEILKMTKPPFVMEKW-IVGIAKSQT-VECTVTYESDVRTPKSTKHVHSI 532 The following BLAST results are available for this feature:
BLAST of TCONS_00034982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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