TCONS_00034969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034969
Unique NameTCONS_00034969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034969 ID=TCONS_00034969|Name=TCONS_00034969|organism=Clytia hemisphaerica|type=transcript|length=277bp
AAAAAGTCAAGCCATCGATTGGGTTCTTCATATTTATTCATTCATGTTTT
CCTTATTTGGGTATTTTCGTCTAATTTTGTACCCAACATGAGAAAAACTT
CGTGATATTATACTATAGATCGTAGAGACGCCCAGCGGTGTTGGTGATGT
GATTGGGCTTTTTTGGCGTGATAGCGTGACGATCTATGATTTCAAAAAGC
GTAATAAATGATtgataagaaaatttatttGGTGTGATGACGTAATCGAG
ACTCCGCTCGGTCTACTTAAAGCTCTG
Run BLAST on NCBI

transcript from alignment at sc0001236:23645..23921

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034969 ID=TCONS_00034969|Name=TCONS_00034969|organism=Clytia hemisphaerica|type=transcript|length=277bp|location=Sequence derived from alignment at sc0001236:23645..23921 (Clytia hemisphaerica)
CAGAGCTTTAAGTAGACCGAGCGGAGTCTCGATTACGTCATCACACCaaa
taaattttcttatcaATCATTTATTACGCTTTTTGAAATCATAGATCGTC
ACGCTATCACGCCAAAAAAGCCCAATCACATCACCAACACCGCTGGGCGT
CTCTACGATCTATAGTATAATATCACGAAGTTTTTCTCATGTTGGGTACA
AAATTAGACGAAAATACCCAAATAAGGAAAACATGAATGAATAAATATGA
AGAACCCAATCGATGGCTTGACTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020358XLOC_020358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034969-exon-sc0001236-1491911889:23645..23921TCONS_00034969-exon-sc0001236-1491911889:23645..23921Clytia hemisphaericaexon
TCONS_00034969-exon-sc0001236-1510915933:23645..23921TCONS_00034969-exon-sc0001236-1510915933:23645..23921Clytia hemisphaericaexon
TCONS_00034969-exon-sc0001236-1575043694:23645..23921TCONS_00034969-exon-sc0001236-1575043694:23645..23921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001236supercontigsc0001236:23645..23921 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.661394	0	0.867018	1.61091	1.56359	0.342614	4.10566	0.710627	0.584232	2.1944	3.86188	0.791661	3.28117	8.01151	0.49739	0	0	2.14503	2.20933	0.985886	0	0	2.28395	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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