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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034911 ID=TCONS_00034911|Name=TCONS_00034911|organism=Clytia hemisphaerica|type=transcript|length=4050bpRun BLAST on NCBI protein sequence of TCONS_00034911-protein >TCONS_00034911-protein ID=TCONS_00034911-protein|Name=TCONS_00034911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1000bp MTISACFSFSDVMPFDLLVGELVEYKTNGKDGNVFLTNFRLFVSGNQFFFRun BLAST on NCBI transcript from alignment at sc0001231:9529..24846+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00034911 ID=TCONS_00034911|Name=TCONS_00034911|organism=Clytia hemisphaerica|type=transcript|length=15318bp|location=Sequence derived from alignment at sc0001231:9529..24846+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001231:9529..24846+ >TCONS_00034911 ID=TCONS_00034911|Name=TCONS_00034911|organism=Clytia hemisphaerica|type=CDS|length=45045bp|location=Sequence derived from alignment at sc0001231:9529..24846+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00034911 vs. Swiss-Prot (Human)
Match: MTMR3 (Myotubularin-related protein 3 OS=Homo sapiens GN=MTMR3 PE=1 SV=3) HSP 1 Score: 515.768 bits (1327), Expect = 1.173e-159 Identity = 262/556 (47.12%), Postives = 358/556 (64.39%), Query Frame = 1
Query: 280 MPFDLLVGELVEYKTNGKDGNVFLTNFRLFVSGNQFFFNLPIRLIEYVEMRDPYGLHVHCKDGKVLRIAFNTTEDCTECSRLITSNETSCTKVDEFFAFQYFSQMKNEEMNFESLSLRTSKQHPPKKTKSSQISCEASMYVDEIKRLGFNTKSIWRTTEINDKFGICETYPKYHIVPKWITDKDLETIARFRSLKRFPSVVWRSQQNGAVIARCSQPELGWFGWRCQEDESLLSAIAQAAKLDS-------------------SKVTDIQHMSLSVNVNMKDSCTSHAPSFLLVDXXXXXXXXXXXXKGGGCEYQEYYPNCEIQFMGLPNIHAIRKSFHGVRALCLLGQEQSNWYSALEATRWLQNLSLLIKSACTIVEAIDVESRSTLIHCSDGWDRTPQLGSLAQLLLDPYYRTIKGFRVLVEREWLEFGHKFADRCGHSTERDH-NERSPVFFQWLDAIHQVMRQFPSAFEFNEFFLIKLLHHSYSCLYGTFLCNSLKERRDLKVHTHTKSVWDLLLSGRKDFNNYLFDENSTKVLYPDHRVRCLNLWDNVFM 1887
+PF L GE E+ +D + L+N+RL + + N+P++LIE VE RD + LH+ CKD KV+R F+T E C E + + + K+++ F+F Y + + +QH ++ S + +E++R+GF+ + WR + IN+K+ +C +YP+ IVP WITDK+LE+++ FRS KR P+V++R Q NGAVIARC QPE+ W+GWR +DE L+ ++A+A DS ++D++ S N + +S L++DARSYAAAVANRAKGGGCE EYYPNCE+ FMG+ NIH+IR+SF +R LC + NW SALE+T+WL +LS+L+KSA +V A+D + R L+HCSDGWDRTPQ+ +LA+LLLDPYYRTI+GF+VLVE EWL+FGHKFADRCGH D NER PVF QWLD +HQ+ RQFP +FEFNE FL+KL+ H+YSCL+GTFLCN+ KER + T SVW LL +G K F N L+ S VLYP VR L LW V++
Sbjct: 32 VPFLELHGESTEFVGRAEDAIIALSNYRLHIKFKESLVNVPLQLIESVECRDIFQLHLTCKDCKVIRCQFSTFEQCQEWLKRLNNAIRPPAKIEDLFSFAYHAWCME-------VYASEKEQHGDLCRPGEHVT---SRFKNEVERMGFDMNNAWRISNINEKYKLCGSYPQELIVPAWITDKELESVSSFRSWKRIPAVIYRHQSNGAVIARCGQPEVSWWGWRNADDEHLVQSVAKACASDSRSSGSKLSTRNTSRDFPNGGDLSDVEFDSSLSNASGAESLAIQPQKLLILDARSYAAAVANRAKGGGCECPEYYPNCEVVFMGMANIHSIRRSFQSLRLLCTQMPDPGNWLSALESTKWLHHLSVLLKSALLVVHAVDQDQRPVLVHCSDGWDRTPQIVALAKLLLDPYYRTIEGFQVLVEMEWLDFGHKFADRCGHGENSDDLNERCPVFLQWLDCVHQLQRQFPCSFEFNEAFLVKLVQHTYSCLFGTFLCNNAKERGEKHTQERTCSVWSLLRAGNKAFKNLLYSSQSEAVLYPVCHVRNLMLWSAVYL 577 HSP 2 Score: 128.257 bits (321), Expect = 1.263e-29 Identity = 72/182 (39.56%), Postives = 104/182 (57.14%), Query Frame = 1
Query: 2707 ADTAEEQDYRCFIDEDGLTRCYDFLEQKLVDIELRHAQEVQRLQKKLDLERQARL---YLQQQIFRDGGVNLETLQDDMLSLPDS-VNGERSSLS----SISNEEGWEQVQFDDVTPVRWIPDHMTQNCSSCGFHFNLMYRKHHCRKCGGVFCDPCSNHTISVPEEQLYTPVRVCAKCYESL 3228
A ++ +Q R +D+DG++ D ++Q+L IE H QEV+ L+K++ E ++RL YL + +G D++ S+PDS N +++ LS I +E WEQV D RW+PDH+ +C +C F L RKHHCR CG VFC C N + VP +QL+ P RVC CY SL
Sbjct: 1003 ATSSPDQPSRSHLDDDGMSVYTDTIQQRLRQIESGHQQEVETLKKQVQ-ELKSRLESQYLTSSLHFNGDFG-----DEVTSIPDSESNLDQNCLSRCSTEIFSEASWEQVDKQDTEMTRWLPDHLAAHCYACDSAFWLASRKHHCRNCGNVFCSSCCNQKVPVPSQQLFEPSRVCKSCYSSL 1178 The following BLAST results are available for this feature:
BLAST of TCONS_00034911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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