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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034892 ID=TCONS_00034892|Name=TCONS_00034892|organism=Clytia hemisphaerica|type=transcript|length=2685bp
TTCTTGTCTGTGTGTGTGCGTGGACTTACATTCAAACAGAACCCATCTCA
ACATCCGCTGATCGTGCAGCAAATCGTTTCAATCAATTCAATTCATTCAA
CTTATTTCAACTGAATCAGTCAAATCTCTCAACTTATTATCAACTTGTTC
ACGTTACTCAATTTACGTGAATATCAAGACGTAATCTTCGTCGGATCGAT
TACAAAATACTCAACTCTACTGGGCAGCTAGTCGAGAAAGTTGACACGTC
AAAGGAGTCTTCAACTGAGTTTCAAATCTACTCAACAAAATCAACATTCA
ACGAAATGCCATCTCAATCTGCAATCAACATCAAAGTCCTTATCCAGGAG
GTAGCTGACACTATTGACGAAAATCCTATCGAACCTGGAGCTGACTACAA
AGACGTCATCGAGAGGTTAATCGAGTTACGTAAATCCATTCGATCCAATG
AACAAACTCTCGTTACTGAAACCCCCGATCCAATCTTGACAACAACTATC
CTAGAGACACTCAACGTGATGAAGAATTACATCAAGGATGCTACCAGATC
CAAACGTCATTTTCAAATGGTACAAGCAAAGCAGGAAAGTGATGCTGTTG
ACCGTAAGGAAAAATCACTTCTATTCTCAataaaagattctaaaaattaT
ATCAAGGAGCTTATTACTCAGTTCTCACGCCGACCAAAAGACTGTTCCAA
CGAGGAGTTAATGGACATGAAATCAAATCTATCATCACATATCAACTTAG
TCAATGAAACTTCAAAACGTCTTGAATCCATCTCTTCAGCTGAAACCAAC
AATGAAACTACTACAGAAGCAATCCAACGTCTATTGGAACGGTATGATCA
TTTGACTTTATCAAAATCTGTGTACATCAGAGATCTCAACAAAGAAATCG
ATGAGCGTCAAGTCTATAAGCAAAAGTTGTTTTCTGAATCGAACCTGAAC
ATTAAACTTGAGAAATTTTCTGGATATTCAGATAGTATTGATATTTATAC
CTtcaagtcaaaatttgaaaaactacaTCTCAAAACTACTCCGAAACATC
TACTTGCTGATTTACTCAAGAATAACTATCTGAAGGAACCAACCCTGAAT
TGTGTCAAAACTCAAGATGACATAGACGAAATTTGGGATCGACTGAATCA
AGCCTATGGCAACGTCATACTCATCCTCCAAAGAAAAATCAACCAACTGA
CGTCATCAAGTTCCATTCAACGCTCCAAAGACACTGGATCAATCATTGAA
TCAATGACCAATATTGTCAACCTCATCAAGGACCTTACATCTTTGGCAAG
GGAACATCACGTCGAGAATTATCTGTATTACGGTGGTGGAATCAACAAAG
CCTATAACCTGCTTGGTGATGCCAGGCTATCAAGATGGTTAACACAGATA
TCAAACGTCATTCATACACCTGAGGAGACTTGGTCAAAACTGTGCACCTT
CCTCGAAGATGAGCTGAAAATCCAACACCAGAAGCTGACAGTGAAATCAA
GCATTCAAGACAACAANNNNNNNNNNNNNNNNNNNNNGGAGGATCAAGTC
AACAAAGATTTGTTATCAACTTACAAACAACGCTGTGTCCGAAGCTCCAA
TCTGccagaattttccaaaaacatcAGTTTATCATTTCATGTACATGAAT
CGTTCAAGACGACTCCAATATCTGGTGATAAAGAATCAACTGACCAGCGT
GGTATCTACATGCTACAAACAATCTCAATTGACAACACCCCATACACTAT
CTTCTATGACACAGGGTGTAGTGACTTTATCGTCAAACGTTCAGCCATTC
AATCACTTGATTCAAGAGCTAAAAAAATGTCATCCCAAGTTACGTCCATC
GGCGGAGTTGGTCAAACATCATTGCAGTCATTTGGAACCTTCAACGTCAA
AATCCCAATGCACGATGGCANGGAACAACGGGACTCAGAGGTAaggattt
tcttcttttccttccaTACCTCAATCTGAGCCCATTTGCTTTATCTGTGG
TGCAAAAGACGGAACTGATGAACATGTATCCACTCTNAACTTGATACGAT
AACCGCTAACTTTCCACAGTATCCACTCACTGATGTTTACACGGAGATTG
CTCAAAGCTACCACTCATCCGATCATTGTTCAACTCAACTTCCATCTGTA
CCTTCAAGTATCGGAGGAGATGTCCACTTCATGGTTGGTATTAGCTATTT
ACGATATCACCCAAAAGTCGTATATCAACTTGCGTCAGNAAGTTTGTAGA
ATTAACTCCAGCTGATAGACTCTCATTACTAAGAAGCAAAAGATACTGTT
TTCAGTGCCTTTTTCCAGGTGCTGATGCTTCATCACCTAAGCACAAAGAA
GGGAGATGTCAACGTGATAACACCTGCCCAAATCCTATCCACCAGAAGTA
TCCAACCAAAAAACACGTCCTTGTTTGCAACGACCACAAGGAGGATCAAG
TCAACAAAGATNATTGAGTAATCAATTATCATTGTACCAAACTGGAATTC
AAGTGAATTCAGATGTCAACAAGTTATTTTCTTACCCATCGTATCCCATC
AAGCAATTCGAAGAGATAGAATCAACTGGTTCAACCATATCTTATCGGTG
CATCAAGTGCAGAGAATGCAACGATTGTAAGAATTCAAACATCCCAGAGG
AAATCAGCATCAAAGAAGAATATGAGCAGAACATC Run BLAST on NCBI protein sequence of TCONS_00034892-protein >TCONS_00034892-protein ID=TCONS_00034892-protein|Name=TCONS_00034892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
MPSQSAINIKVLIQEVADTIDENPIEPGADYKDVIERLIELRKSIRSNEQ
TLVTETPDPILTTTILETLNVMKNYIKDATRSKRHFQMVQAKQESDAVDR
KEKSLLFSIKDSKNYIKELITQFSRRPKDCSNEELMDMKSNLSSHINLVN
ETSKRLESISSAETNNETTTEAIQRLLERYDHLTLSKSVYIRDLNKEIDE
RQVYKQKLFSESNLNIKLEKFSGYSDSIDIYTFKSKFEKLHLKTTPKHLL
ADLLKNNYLKEPTLNCVKTQDDIDEIWDRLNQAYGNVILILQRKINQLTS
SSSIQRSKDTGSIIESMTNIVNLIKDLTSLAREHHVENYLYYGGGINKAY
NLLGDARLSRWLTQISNVIHTPEETWSKLCTFLEDELKIQHQKLTVKSSI
QDNXXXXXXXXEDQVNKDLLSTYKQRCVRSSNLPEFSKNISLSFHVHESF
KTTPISGDKESTDQRGIYMLQTISIDNTPYTIFYDTGCSDFIVKRSAIQS
LDSRAKKMSSQVTSIGGVGQTSLQSFGTFNVKIPMHDGXEQRDSEVRIFF
FSFHTSI Run BLAST on NCBI transcript from alignment at sc0001230:22157..24879+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034892 ID=TCONS_00034892|Name=TCONS_00034892|organism=Clytia hemisphaerica|type=transcript|length=2723bp|location=Sequence derived from alignment at sc0001230:22157..24879+ (Clytia hemisphaerica)
TTCTTGTCTGTGTGTGTGCGTGGACTTACATTCAAACAGCTGGCCAAGAA
TGTCTGCGTGGACTTACATTCAAACAGAACCCATCTCAACATCCGCTGAT
CGTGCAGCAAATCGTTTCAATCAATTCAATTCATTCAACTTATTTCAACT
GAATCAGTCAAATCTCTCAACTTATTATCAACTTGTTCACGTTACTCAAT
TTACGTGAATATCAAGACGTAATCTTCGTCGGATCGATTACAAAATACTC
AACTCTACTGGGCAGCTAGTCGAGAAAGTTGACACGTCAAAGGAGTCTTC
AACTGAGTTTCAAATCTACTCAACAAAATCAACATTCAACGAAATGCCAT
CTCAATCTGCAATCAACATCAAAGTCCTTATCCAGGAGGTAGCTGACACT
ATTGACGAAAATCCTATCGAACCTGGAGCTGACTACAAAGACGTCATCGA
GAGGTTAATCGAGTTACGTAAATCCATTCGATCCAATGAACAAACTCTCG
TTACTGAAACCCCCGATCCAATCTTGACAACAACTATCCTAGAGACACTC
AACGTGATGAAGAATTACATCAAGGATGCTACCAGATCCAAACGTCATTT
TCAAATGGTACAAGCAAAGCAGGAAAGTGATGCTGTTGACCGTAAGGAAA
AATCACTTCTATTCTCAataaaagattctaaaaattaTATCAAGGAGCTT
ATTACTCAGTTCTCACGCCGACCAAAAGACTGTTCCAACGAGGAGTTAAT
GGACATGAAATCAAATCTATCATCACATATCAACTTAGTCAATGAAACTT
CAAAACGTCTTGAATCCATCTCTTCAGCTGAAACCAACAATGAAACTACT
ACAGAAGCAATCCAACGTCTATTGGAACGGTATGATCATTTGACTTTATC
AAAATCTGTGTACATCAGAGATCTCAACAAAGAAATCGATGAGCGTCAAG
TCTATAAGCAAAAGTTGTTTTCTGAATCGAACCTGAACATTAAACTTGAG
AAATTTTCTGGATATTCAGATAGTATTGATATTTATACCTtcaagtcaaa
atttgaaaaactacaTCTCAAAACTACTCCGAAACATCTACTTGCTGATT
TACTCAAGAATAACTATCTGAAGGAACCAACCCTGAATTGTGTCAAAACT
CAAGATGACATAGACGAAATTTGGGATCGACTGAATCAAGCCTATGGCAA
CGTCATACTCATCCTCCAAAGAAAAATCAACCAACTGACGTCATCAAGTT
CCATTCAACGCTCCAAAGACACTGGATCAATCATTGAATCAATGACCAAT
ATTGTCAACCTCATCAAGGACCTTACATCTTTGGCAAGGGAACATCACGT
CGAGAATTATCTGTATTACGGTGGTGGAATCAACAAAGCCTATAACCTGC
TTGGTGATGCCAGGCTATCAAGATGGTTAACACAGATATCAAACGTCATT
CATACACCTGAGGAGACTTGGTCAAAACTGTGCACCTTCCTCGAAGATGA
GCTGAAAATCCAACACCAGAAGCTGACAGTGAAATCAAGCATTCAAGACA
ACAANNNNNNNNNNNNNNNNNNNNNGGAGGATCAAGTCAACAAAGATTTG
TTATCAACTTACAAACAACGCTGTGTCCGAAGCTCCAATCTGccagaatt
ttccaaaaacatcAGTTTATCATTTCATGTACATGAATCGTTCAAGACGA
CTCCAATATCTGGTGATAAAGAATCAACTGACCAGCGTGGTATCTACATG
CTACAAACAATCTCAATTGACAACACCCCATACACTATCTTCTATGACAC
AGGGTGTAGTGACTTTATCGTCAAACGTTCAGCCATTCAATCACTTGATT
CAAGAGCTAAAAAAATGTCATCCCAAGTTACGTCCATCGGCGGAGTTGGT
CAAACATCATTGCAGTCATTTGGAACCTTCAACGTCAAAATCCCAATGCA
CGATGGCANGGAACAACGGGACTCAGAGGTAaggattttcttcttttcct
tccaTACCTCAATCTGAGCCCATTTGCTTTATCTGTGGTGCAAAAGACGG
AACTGATGAACATGTATCCACTCTNAACTTGATACGATAACCGCTAACTT
TCCACAGTATCCACTCACTGATGTTTACACGGAGATTGCTCAAAGCTACC
ACTCATCCGATCATTGTTCAACTCAACTTCCATCTGTACCTTCAAGTATC
GGAGGAGATGTCCACTTCATGGTTGGTATTAGCTATTTACGATATCACCC
AAAAGTCGTATATCAACTTGCGTCAGNAAGTTTGTAGAATTAACTCCAGC
TGATAGACTCTCATTACTAAGAAGCAAAAGATACTGTTTTCAGTGCCTTT
TTCCAGGTGCTGATGCTTCATCACCTAAGCACAAAGAAGGGAGATGTCAA
CGTGATAACACCTGCCCAAATCCTATCCACCAGAAGTATCCAACCAAAAA
ACACGTCCTTGTTTGCAACGACCACAAGGAGGATCAAGTCAACAAAGATN
ATTGAGTAATCAATTATCATTGTACCAAACTGGAATTCAAGTGAATTCAG
ATGTCAACAAGTTATTTTCTTACCCATCGTATCCCATCAAGCAATTCGAA
GAGATAGAATCAACTGGTTCAACCATATCTTATCGGTGCATCAAGTGCAG
AGAATGCAACGATTGTAAGAATTCAAACATCCCAGAGGAAATCAGCATCA
AAGAAGAATATGAGCAGAACATC Coding sequence (CDS) from alignment at sc0001230:22157..24879+ >TCONS_00034892 ID=TCONS_00034892|Name=TCONS_00034892|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at sc0001230:22157..24879+ (Clytia hemisphaerica)
ATGCCATCTCAATCTGCAATCAACATCAAAGTCCTTATCCAGGAGGTAGC
TGACACTATTGACGAAAATCCTATCGAACCTGGAGCTGACTACAAAGACG
TCATCGAGAGGTTAATCGAGTTACGTAAATCCATTCGATCCAATGAACAA
ACTCTCGTTACTGAAACCCCCGATCCAATCTTGACAACAACTATCCTAGA
GACACTCAACGTGATGAAGAATTACATCAAGGATGCTACCAGATCCAAAC
GTCATTTTCAAATGGTACAAGCAAAGCAGGAAAGTGATGCTGTTGACCGT
AAGGAAAAATCACTTCTATTCTCAataaaagattctaaaaattaTATCAA
GGAGCTTATTACTCAGTTCTCACGCCGACCAAAAGACTGTTCCAACGAGG
AGTTAATGGACATGAAATCAAATCTATCATCACATATCAACTTAGTCAAT
GAAACTTCAAAACGTCTTGAATCCATCTCTTCAGCTGAAACCAACAATGA
AACTACTACAGAAGCAATCCAACGTCTATTGGAACGGTATGATCATTTGA
CTTTATCAAAATCTGTGTACATCAGAGATCTCAACAAAGAAATCGATGAG
CGTCAAGTCTATAAGCAAAAGTTGTTTTCTGAATCGAACCTGAACATTAA
ACTTGAGAAATTTTCTGGATATTCAGATAGTATTGATATTTATACCTtca
agtcaaaatttgaaaaactacaTCTCAAAACTACTCCGAAACATCTACTT
GCTGATTTACTCAAGAATAACTATCTGAAGGAACCAACCCTGAATTGTGT
CAAAACTCAAGATGACATAGACGAAATTTGGGATCGACTGAATCAAGCCT
ATGGCAACGTCATACTCATCCTCCAAAGAAAAATCAACCAACTGACGTCA
TCAAGTTCCATTCAACGCTCCAAAGACACTGGATCAATCATTGAATCAAT
GACCAATATTGTCAACCTCATCAAGGACCTTACATCTTTGGCAAGGGAAC
ATCACGTCGAGAATTATCTGTATTACGGTGGTGGAATCAACAAAGCCTAT
AACCTGCTTGGTGATGCCAGGCTATCAAGATGGTTAACACAGATATCAAA
CGTCATTCATACACCTGAGGAGACTTGGTCAAAACTGTGCACCTTCCTCG
AAGATGAGCTGAAAATCCAACACCAGAAGCTGACAGTGAAATCAAGCATT
CAAGACAACAANNNNNNNNNNNNNNNNNNNNNGGAGGATCAAGTCAACAA
AGATTTGTTATCAACTTACAAACAACGCTGTGTCCGAAGCTCCAATCTGc
cagaattttccaaaaacatcAGTTTATCATTTCATGTACATGAATCGTTC
AAGACGACTCCAATATCTGGTGATAAAGAATCAACTGACCAGCGTGGTAT
CTACATGCTACAAACAATCTCAATTGACAACACCCCATACACTATCTTCT
ATGACACAGGGTGTAGTGACTTTATCGTCAAACGTTCAGCCATTCAATCA
CTTGATTCAAGAGCTAAAAAAATGTCATCCCAAGTTACGTCCATCGGCGG
AGTTGGTCAAACATCATTGCAGTCATTTGGAACCTTCAACGTCAAAATCC
CAATGCACGATGGCANGGAACAACGGGACTCAGAGGTAaggattttcttc
ttttccttccaTACCTCAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034892-exon-sc0001230-1491911889:22157..22185 | TCONS_00034892-exon-sc0001230-1491911889:22157..22185 | Clytia hemisphaerica | exon |
| TCONS_00034892-exon-sc0001230-1510915933:22157..22185 | TCONS_00034892-exon-sc0001230-1510915933:22157..22185 | Clytia hemisphaerica | exon |
| TCONS_00034892-exon-sc0001230-1575043694:22157..22185 | TCONS_00034892-exon-sc0001230-1575043694:22157..22185 | Clytia hemisphaerica | exon |
| TCONS_00034892-exon-sc0001230-1491911889:22224..24879 | TCONS_00034892-exon-sc0001230-1491911889:22224..24879 | Clytia hemisphaerica | exon |
| TCONS_00034892-exon-sc0001230-1510915933:22224..24879 | TCONS_00034892-exon-sc0001230-1510915933:22224..24879 | Clytia hemisphaerica | exon |
| TCONS_00034892-exon-sc0001230-1575043694:22224..24879 | TCONS_00034892-exon-sc0001230-1575043694:22224..24879 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001230 | supercontig | sc0001230:22157..24879 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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