TCONS_00034872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034872
Unique NameTCONS_00034872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034872 ID=TCONS_00034872|Name=TCONS_00034872|organism=Clytia hemisphaerica|type=transcript|length=1232bp
GAGCTTTCAAAAATCACACAAAGAGTTGATAACCTTTCTTAACCTACAAT
AGTGACATAGTTCTCAtcaaattttgaccctttcacTATCCTAGTCATCT
TCGGATCAGGGACAACTCCATTAGGATTTTTGGTTGAATGATCTTCATAC
CAAACTGAAACTCTGTGTGTTACAAGCCTAAAAAACTGTCTGTATGATCC
TTTCTTCAATGGCAGAGATTCGTGAGGTGTACGATCAGTTATCCAATAGA
GATAATTAGATTTTAAAAGTGTTGATTCTGGCAAGAAACATCGTAAATGC
TCAATATCTCCATGTTTGCGAATCAACTCCTCGCCATTATTGTCAGTAAC
AATCTGACAATCCCAAACTTTACAAGAATCATCAACATTGGATGCCATAT
AAATACCACCATGAGGGACATCTATACTAGTGTAACCAAACTGTCCCCAC
GAAACAGGAAAAGGGACGATTTCATCATAACCAGAACCCTTTTCAATGCA
CAACTCCTNGAGGGACATCTATACTAGTGTAACTAAACTGTCCCCACGAA
ACAGGAAAAGGGACGATTTCATCATAACCAGAACCCTTTTCAATGCACAA
CTCCTCACACTTTtcatcacttaaaccattcttAACATAAATATAACCAG
GAGATTCAGTATGTAAACCTGGTCTCCGCTGAGATTTACCTTCCTCGACC
AAACTTTCATGAATTGTTAGATAACCGATTTTACCCAATTCCTCTATGTG
AAAAATGAGGGGAACTTCTTTAAAGAACGCAGTTTCAATCATATCAGAAT
ATGGTTTGAGATAATCTGGCAATTGCATGTTTTCAAATTGCTTTGCCATG
ACAAAAGGCATCATGTTGATATTGATATCAGTTGGTTTAGGGAATTTCAC
ATTAAATCGATGCCGAAAGCCAGTTAGGGCTATGAATGGGTTGTAATCTT
CCATATAATTCTCAGTGGTCTTTCCAAAATTAATATGCATATGCATTGCT
ACCAAATATTTTTCCCATATCAACTTGACAACATGAGGCATACCATAAAG
TTTGGAAAATTGACAATTATCATCAGCAACACCTTGTAAAATGGTGCGCA
ACACAGGGTTTATTGGATTCTTTTTTTCTAACTTCAATTCATCCATTTTT
CTATCTAATTCTGCCATTACAATGTTGAAGAAAGACCTACCTAAAGGCTA
TAGTGtagtaaaaaaatagaaaaaatggcAAC
Run BLAST on NCBI

transcript from alignment at sc0001229:18459..20078+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034872 ID=TCONS_00034872|Name=TCONS_00034872|organism=Clytia hemisphaerica|type=transcript|length=1620bp|location=Sequence derived from alignment at sc0001229:18459..20078+ (Clytia hemisphaerica)
GAGCTTTCAAAAATCACACAAAGAGTTGATAACCTTTCTTAACCTACAAT
AGTGACATAGTTCTCAtcaaattttgaccctttcacTATCCTAGTCATCT
TCGGATCAGGGACAACTCCATTAGGATTTTTGGTTGAATGATCTTCATAC
CAAACTGAAACTCTGTGTGTTACAAGCCTAAAAAACTGTCTGTATGATCC
TTTCTTCAATGGCAGAGATTCGTGAGGTGTACGATCAGTTATCCAATAGA
GATAATTAGATTTTAAAAGTGTTGATTCTGGCAAGAAACATCGTAAATGC
TCAATATCTCCATGTTTGCGAATCAACTCCTCGCCATTATTGTCAGTAAC
AATCTGACAATCCCAAACTTTACAAGAATCATCAACATTGGATGCCATAT
AAATACCACCATGAGGGACATCTATACTAGTGTAACCAAACTGTCCCCAC
GAAACAGGAAAAGGGACGATTTCATCATAACCAGAACCCTTTTCAATGCA
CAACTCCTNGAGGGACATCTATACTAGTGTAACTAAACTGTCCCCACGAA
ACAGGAAAAGGGACGATTTCATCATAACCAGAACCCTTTTCAATGCACAA
CTCCTCACACTTTtcatcacttaaaccattcttAACATAAATATAACCAG
GAGATTCAGTATGTAAACCTGGTCTCCGCTGAGATTTACCTTCCTCGACC
AAACTTTCATGAATTGTTAGATAACCGATTTTACCCAATTCCTCTATGTG
AAAAATGAGGGGAACTTCTTTAAAGAACGCAGTTTCAATCATATCAGAAT
ATGGTTTGAGATAATCTGGCAATTGCATGTTTTCAAATTGCTTTGCCATG
ACAAAAGGCATCATGTTGATATTGATATCAGTTGGTTTAGGGAATTTCAC
ATTAAATCGATGCCGAAAGCCAGTTAGGGCTATGAATGGGTTGTAATCTT
CCATATAATTCTCAGTGGTCTTTCCAAAATTAATATGCATATGCATTGCT
ACCAAATATTTTTCCCATATCAACTTGACAACATGAGGCATACCATAAAG
TTTGGAAAATTGACAATTATCATCAGCAACACCTTGTAAAATGGTGCGCA
ACACAGGGTTTATTGGATTCTTTTTTTCTAACTTCAATTCATCCATTTTT
CTATCTAATTCTGCCATTACAATGTTGAAGAAAGGTCTTgaatcaaattt
gtttttttaatattcttttgtttgtttctttcttttttgtatacaccgat
aaaaaaatttacttaattttctttggtattattttctgatttttagttAG
TCTGACAATTGTTGccattttttccctttttttactACACTATAGCCTTT
AGGTAGGTctattcagcatgtagcttgttatttttgaaatatctattcct
cctgtaattttttttttcttcattcttaTTCTTCTCACAAAACAAATCAT
AAAAGTGATCGAATTCGAATTTTCGAATCATGGAAAGAAAAATGTTACAA
TGTAAATTTATTGGTTTTACATTGTTTCTTTACTTTCTATGATGAAACAT
ATACATAATACATGCTGAATAGACCTACCTAAAGGCTATAGTGtagtaaa
aaaatagaaaaaatggcAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020288XLOC_020288Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034872-exon-sc0001229-1491911889:18459..19642TCONS_00034872-exon-sc0001229-1491911889:18459..19642Clytia hemisphaericaexon
TCONS_00034872-exon-sc0001229-1510915933:18459..19642TCONS_00034872-exon-sc0001229-1510915933:18459..19642Clytia hemisphaericaexon
TCONS_00034872-exon-sc0001229-1575043694:18459..19642TCONS_00034872-exon-sc0001229-1575043694:18459..19642Clytia hemisphaericaexon
TCONS_00034872-exon-sc0001229-1491911889:20031..20078TCONS_00034872-exon-sc0001229-1491911889:20031..20078Clytia hemisphaericaexon
TCONS_00034872-exon-sc0001229-1510915933:20031..20078TCONS_00034872-exon-sc0001229-1510915933:20031..20078Clytia hemisphaericaexon
TCONS_00034872-exon-sc0001229-1575043694:20031..20078TCONS_00034872-exon-sc0001229-1575043694:20031..20078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001229supercontigsc0001229:18459..20078 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.260267	0.26552	0.252887	1.07046	0.712368	0.571632	0.697688	0.54417	0.502845	0.491168	0.250426	0.156751	0.818054	1.12477	0.157641	0.222865	0.0898077	0.492102	1.63946	3.17123	0.198762	0.282577	0.413145	0.224113	0.0452693	0.0387854	0.196513	0.248563	0.112387	0.221292
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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