TCONS_00034863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034863
Unique NameTCONS_00034863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2037

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034863 ID=TCONS_00034863|Name=TCONS_00034863|organism=Clytia hemisphaerica|type=transcript|length=2037bp
TTGAAATGAGAAAGAAACACAATATTATAAAACTAtgacataaacaaaaa
aaacccATCTTATTTCAAACCCTTAACCAAAACTTTTGTAACAGATTTCT
CTCTCAACATTAGCACACTAATTGAGTCAAACAGCTGATTTGTTATGCTG
TAACGTATATCGCAAGGTGTGTTTCATAATTTTATCGATGGCGAAGCGAA
TTTTCATACTTGTTATTTTGATCATTCAAATCGCAAATATATCGTCTTCG
ATCAAAGGCTGTATCAATAATGGAACCGTATTTTCTTGCATTGGGTCAAA
TCTAACATCAGATGACCTTCCTTCAATCTTTGGTAACTTACCGCCAAATC
TAACGACGCTTATCTTCGACGaaaataacattacaaacatcaACTTGATG
GGTGAAacctccaaaaatttttttaatttgaccaaaatttccttAAGATT
GAACAAAATAACGAAGTTTCCTGAAAACCTTCAAAGTATATTTCCAAATC
TTGAAGTTCTTGAGTTATCAGGAAACCATATTGAATCTCTAGATCTAATT
AAGATACCAACGTTAAGAGAGTTATACTTGGACAGCAACAGATTGGAGTA
TCTAACCAACAATACTTTCGCTCATTTAAATGGATTATCTATTTTGAGTC
TTGAAAGAAACGACATTCAATTTATCACCGCAAACGCGTTCTACAACTTA
ACGAGCTTGAAATATATCAGCCTGGCTGGAAACAAGATAGCTGATCTGCA
TTCAGGTCTTTTTGACTCATTCAGAACCAATGATGGGATTATAGTTAATC
TTAGTTCAAATATCATACAAAGTATACCATATAATTTATTCACGTTCGAA
AGCGTCCGAAACATAGATTTGTCCGGTAATGAAATTTGGAATATCAAAAA
TGACGCATTCTTAGAGCTAATAGCTGTCGATGGAAGCATTAACCTTGAAA
ATAACATCTTGAAAATGGTTCCTTTATTCCCCGAGCTACCTTCAGGTATT
ATTAAACTGGAAGGGAACCCGCTTATATGTAATTGTGATCTCTTTGCTCG
TACAAAAGCGCAAGGCGAAATTACTTTTAACGGAACCTGCCAGCATCCTG
AAGAAGAACGAGGACGGAATATCAATGATGTTAAATCTAACATTTGCACT
TATTGTGATCTACATAAACCATGCCAAAATAAAGGACACTGCATCGATTA
TCCTGGTAACTTCTTCTATAAATGTATATGTGAAAAGCCTTACTATGGAC
AAAGATGTGAGGAATTTGACCACGACTGGCGCAATTGTACAAACATAACA
TGTCCTGTACATTCAGAGTGTATTGAGATTCGAGCATATAATTACGAGTG
CCAATGTGTTGATGGATTCAAAGGAAATCCTTGCGTTCCAGTACATACAG
ATGAGAATTCGAGAATGAGTTTTTATATTACTATCGGCTTGGCAATGCTT
GGAGGGATTGTGTTGATCTTTTGTTTTGTATGCTGTTGTATGAAGAGATA
TCGAAAGCATGAGAGTTACATGGTTGTACCGAGTGAACGGACTAATATTG
GCGAAGCAGAGGATTCAAAATATGGTGGACTGTGAAATCATatattgtta
ttgttatttcattgctttttcATATTAACAGTTGACGCTCTTTtaatacc
cccttctcacaaaaccggtaggatttttttcagctGGGATAAAaacaacg
gactgaaactcgatggggattgatattcccatatgtTTTAAGGTTGNAAA
ACTCTCACAAaaccggtaggatttttttcagctGGGATAAAaacaacgga
ctgaaactcgatggggattgatattcccatatgtTTTAAGGTTGGAGatg
ttaattctttttttttaagtcaAATAATTCAGCGAGAATGGAAAAATAGa
ataatattttgcaatgaggatttgtttaattgattattttcaatggagAC
AAAAgtttgccaatttttccagtgggaaggggtccctgtgggtctgtgag
aaagaggtgtctttttttttattctcaaGGTTCGCTT
Run BLAST on NCBI

protein sequence of TCONS_00034863-protein

>TCONS_00034863-protein ID=TCONS_00034863-protein|Name=TCONS_00034863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MAKRIFILVILIIQIANISSSIKGCINNGTVFSCIGSNLTSDDLPSIFGN
LPPNLTTLIFDENNITNINLMGETSKNFFNLTKISLRLNKITKFPENLQS
IFPNLEVLELSGNHIESLDLIKIPTLRELYLDSNRLEYLTNNTFAHLNGL
SILSLERNDIQFITANAFYNLTSLKYISLAGNKIADLHSGLFDSFRTNDG
IIVNLSSNIIQSIPYNLFTFESVRNIDLSGNEIWNIKNDAFLELIAVDGS
INLENNILKMVPLFPELPSGIIKLEGNPLICNCDLFARTKAQGEITFNGT
CQHPEEERGRNINDVKSNICTYCDLHKPCQNKGHCIDYPGNFFYKCICEK
PYYGQRCEEFDHDWRNCTNITCPVHSECIEIRAYNYECQCVDGFKGNPCV
PVHTDENSRMSFYITIGLAMLGGIVLIFCFVCCCMKRYRKHESYMVVPSE
RTNIGEAEDSKYGGL
Run BLAST on NCBI

transcript from alignment at sc0001227:30125..32161

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034863 ID=TCONS_00034863|Name=TCONS_00034863|organism=Clytia hemisphaerica|type=transcript|length=2037bp|location=Sequence derived from alignment at sc0001227:30125..32161 (Clytia hemisphaerica)
AAGCGAACCttgagaataaaaaaaaagacacctctttctcacagacccac
agggaccccttcccactggaaaaattggcaaacTTTTGTctccattgaaa
ataatcaattaaacaaatcctcattgcaaaatattattCTATTTTTCCAT
TCTCGCTGAATTATTtgacttaaaaaaaaagaattaacatCTCCAACCTT
AAAacatatgggaatatcaatccccatcgagtttcagtccgttgttTTTA
TCCCagctgaaaaaaatcctaccggttTTGTGAGAGTTTTNCAACCTTAA
AacatatgggaatatcaatccccatcgagtttcagtccgttgttTTTATC
CCagctgaaaaaaatcctaccggttttgtgagaagggggtattaAAAGAG
CGTCAACTGTTAATATgaaaaagcaatgaaataacaataacaatatATGA
TTTCACAGTCCACCATATTTTGAATCCTCTGCTTCGCCAATATTAGTCCG
TTCACTCGGTACAACCATGTAACTCTCATGCTTTCGATATCTCTTCATAC
AACAGCATACAAAACAAAAGATCAACACAATCCCTCCAAGCATTGCCAAG
CCGATAGTAATATAAAAACTCATTCTCGAATTCTCATCTGTATGTACTGG
AACGCAAGGATTTCCTTTGAATCCATCAACACATTGGCACTCGTAATTAT
ATGCTCGAATCTCAATACACTCTGAATGTACAGGACATGTTATGTTTGTA
CAATTGCGCCAGTCGTGGTCAAATTCCTCACATCTTTGTCCATAGTAAGG
CTTTTCACATATACATTTATAGAAGAAGTTACCAGGATAATCGATGCAGT
GTCCTTTATTTTGGCATGGTTTATGTAGATCACAATAAGTGCAAATGTTA
GATTTAACATCATTGATATTCCGTCCTCGTTCTTCTTCAGGATGCTGGCA
GGTTCCGTTAAAAGTAATTTCGCCTTGCGCTTTTGTACGAGCAAAGAGAT
CACAATTACATATAAGCGGGTTCCCTTCCAGTTTAATAATACCTGAAGGT
AGCTCGGGGAATAAAGGAACCATTTTCAAGATGTTATTTTCAAGGTTAAT
GCTTCCATCGACAGCTATTAGCTCTAAGAATGCGTCATTTTTGATATTCC
AAATTTCATTACCGGACAAATCTATGTTTCGGACGCTTTCGAACGTGAAT
AAATTATATGGTATACTTTGTATGATATTTGAACTAAGATTAACTATAAT
CCCATCATTGGTTCTGAATGAGTCAAAAAGACCTGAATGCAGATCAGCTA
TCTTGTTTCCAGCCAGGCTGATATATTTCAAGCTCGTTAAGTTGTAGAAC
GCGTTTGCGGTGATAAATTGAATGTCGTTTCTTTCAAGACTCAAAATAGA
TAATCCATTTAAATGAGCGAAAGTATTGTTGGTTAGATACTCCAATCTGT
TGCTGTCCAAGTATAACTCTCTTAACGTTGGTATCTTAATTAGATCTAGA
GATTCAATATGGTTTCCTGATAACTCAAGAACTTCAAGATTTGGAAATAT
ACTTTGAAGGTTTTCAGGAAACTTCGTTATTTTGTTCAATCTTaaggaaa
ttttggtcaaattaaaaaaatttttggaggtTTCACCCATCAAGTtgatg
tttgtaatgttattttCGTCGAAGATAAGCGTCGTTAGATTTGGCGGTAA
GTTACCAAAGATTGAAGGAAGGTCATCTGATGTTAGATTTGACCCAATGC
AAGAAAATACGGTTCCATTATTGATACAGCCTTTGATCGAAGACGATATA
TTTGCGATTTGAATGATCAAAATAACAAGTATGAAAATTCGCTTCGCCAT
CGATAAAATTATGAAACACACCTTGCGATATACGTTACAGCATAACAAAT
CAGCTGTTTGACTCAATTAGTGTGCTAATGTTGAGAGAGAAATCTGTTAC
AAAAGTTTTGGTTAAGGGTTTGAAATAAGATgggttttttttgtttatgt
caTAGTTTTATAATATTGTGTTTCTTTCTCATTTCAA

Coding sequence (CDS) from alignment at sc0001227:30125..32161

>TCONS_00034863 ID=TCONS_00034863|Name=TCONS_00034863|organism=Clytia hemisphaerica|type=CDS|length=1398bp|location=Sequence derived from alignment at sc0001227:30125..32161 (Clytia hemisphaerica)
TCACAGTCCACCATATTTTGAATCCTCTGCTTCGCCAATATTAGTCCGTT
CACTCGGTACAACCATGTAACTCTCATGCTTTCGATATCTCTTCATACAA
CAGCATACAAAACAAAAGATCAACACAATCCCTCCAAGCATTGCCAAGCC
GATAGTAATATAAAAACTCATTCTCGAATTCTCATCTGTATGTACTGGAA
CGCAAGGATTTCCTTTGAATCCATCAACACATTGGCACTCGTAATTATAT
GCTCGAATCTCAATACACTCTGAATGTACAGGACATGTTATGTTTGTACA
ATTGCGCCAGTCGTGGTCAAATTCCTCACATCTTTGTCCATAGTAAGGCT
TTTCACATATACATTTATAGAAGAAGTTACCAGGATAATCGATGCAGTGT
CCTTTATTTTGGCATGGTTTATGTAGATCACAATAAGTGCAAATGTTAGA
TTTAACATCATTGATATTCCGTCCTCGTTCTTCTTCAGGATGCTGGCAGG
TTCCGTTAAAAGTAATTTCGCCTTGCGCTTTTGTACGAGCAAAGAGATCA
CAATTACATATAAGCGGGTTCCCTTCCAGTTTAATAATACCTGAAGGTAG
CTCGGGGAATAAAGGAACCATTTTCAAGATGTTATTTTCAAGGTTAATGC
TTCCATCGACAGCTATTAGCTCTAAGAATGCGTCATTTTTGATATTCCAA
ATTTCATTACCGGACAAATCTATGTTTCGGACGCTTTCGAACGTGAATAA
ATTATATGGTATACTTTGTATGATATTTGAACTAAGATTAACTATAATCC
CATCATTGGTTCTGAATGAGTCAAAAAGACCTGAATGCAGATCAGCTATC
TTGTTTCCAGCCAGGCTGATATATTTCAAGCTCGTTAAGTTGTAGAACGC
GTTTGCGGTGATAAATTGAATGTCGTTTCTTTCAAGACTCAAAATAGATA
ATCCATTTAAATGAGCGAAAGTATTGTTGGTTAGATACTCCAATCTGTTG
CTGTCCAAGTATAACTCTCTTAACGTTGGTATCTTAATTAGATCTAGAGA
TTCAATATGGTTTCCTGATAACTCAAGAACTTCAAGATTTGGAAATATAC
TTTGAAGGTTTTCAGGAAACTTCGTTATTTTGTTCAATCTTaaggaaatt
ttggtcaaattaaaaaaatttttggaggtTTCACCCATCAAGTtgatgtt
tgtaatgttattttCGTCGAAGATAAGCGTCGTTAGATTTGGCGGTAAGT
TACCAAAGATTGAAGGAAGGTCATCTGATGTTAGATTTGACCCAATGCAA
GAAAATACGGTTCCATTATTGATACAGCCTTTGATCGAAGACGATATATT
TGCGATTTGAATGATCAAAATAACAAGTATGAAAATTCGCTTCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020281XLOC_020281Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034863-proteinTCONS_00034863-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034863-exon-sc0001227-1491911889:30125..32161TCONS_00034863-exon-sc0001227-1491911889:30125..32161Clytia hemisphaericaexon
TCONS_00034863-exon-sc0001227-1510915933:30125..32161TCONS_00034863-exon-sc0001227-1510915933:30125..32161Clytia hemisphaericaexon
TCONS_00034863-exon-sc0001227-1575043694:30125..32161TCONS_00034863-exon-sc0001227-1575043694:30125..32161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001227supercontigsc0001227:30125..32161 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0388159	0.0378516	0.0442674	0	0.0785541	0.166254	0.674775	0.70428	0.245745	0.286068	0.314606	0.233921	4.78453	6.01871	0.0331424	0.0473066	0.977234	2.17205	9.36651	9.53036	0.489956	0.305776	0.0223179	0.0406047	0.104187	0.186201	0.0798365	0.0861822	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR000742EGF-like_dom
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00034863 vs. Swiss-Prot (Human)
Match: LRC15 (Leucine-rich repeat-containing protein 15 OS=Homo sapiens GN=LRRC15 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.770e-16
Identity = 70/233 (30.04%), Postives = 107/233 (45.92%), Query Frame = 2 
Query:  290 IGSNLTSDDLPSIFGNLPPNLTTLIFDENNITNI------------------NLMGETSKNFF----NLTKISLRLNKITKFPENLQSIFPNLEVLELSGNHIESLD---LIKIPTLRELYLDSNRLEYLTNNTFAHLNGLSILSLERNDIQFITANAFYNLTSLKYISLAGNKIADLHSGLFDSFRTNDGIIVNLSSNIIQSIPYNLFT-FESVRNIDLSGNEIWNIKNDAF 910
            +G N  +   P +F +L  NL  L   EN +T+I                  N +G  S   F    NL ++ L  N I++ P ++    P L  L L GN ++ L       +P LREL+L  N +  L +N F++L  L +L L RN I FI+  AF  LT L+ +SL  N + DL   +F        I  +L +N ++ +P N+F     +  I L  N++ N+    F
Sbjct:  180 LGKNSLTHISPRVFQHLG-NLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNI--SLQNNRLRQLPGNIFANVNGLMAIQLQNNQLENLPLGIF 409
The following BLAST results are available for this feature:
BLAST of TCONS_00034863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC156.770e-1630.04Leucine-rich repeat-containing protein 15 OS=Homo ... [more]
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