TCONS_00034854 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034854
Unique NameTCONS_00034854
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034854 ID=TCONS_00034854|Name=TCONS_00034854|organism=Clytia hemisphaerica|type=transcript|length=589bp
GAAAGAATCAGATTATCTGATATGATGTACGGTTTATTATCCTACGTTGG
AGTTGTCCTGGTAGTCTGGGAACGAATTGAGACAACAAAGAACAATTATT
ACTCCTATATTCAGGggatatttttcagtttttgctcAGTCCTATCTTGG
TGTTTCTACTGTATAATAGCAAGAAGAGTAACAGAGACTACCCCCTTACA
AGTGACACTATTCTATATACACTTCACTGGACTGCTTATCTTACCCTTTT
CGCCTTGGATATTCAGTGCTAGCTTCGCACTGACCAGATCGCCTTTTGTT
TTCACGTATCTTCTACTAGGAGCTGGAGTTTCATATTTTCTATGTGTCAT
GTGCGAAGTGACCAGTATGAGATGTTTAAATGTTGCACTGATAATGATGT
TGAGGAATTCCGAAATTGTTTGGGCACTTTCATACGATATGGTAATCACA
CGTTTATTCCCAAACTGGATTGTTATAATCGGCTTGTTGATTGTGATAGT
GGCAACTTCAATGATTGCAGTCAATATGATTTATGATATCCCTTATTTGG
CTACAATCAAACGTTGGGAATCTAAGATCTGCAAAACTG
Run BLAST on NCBI

transcript from alignment at sc0001227:25314..27256+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034854 ID=TCONS_00034854|Name=TCONS_00034854|organism=Clytia hemisphaerica|type=transcript|length=1943bp|location=Sequence derived from alignment at sc0001227:25314..27256+ (Clytia hemisphaerica)
GAAAGAATCAGATTATCTGATATGATGTACGGTTTATTATCCTACGTTGG
AGTTGTCCTGGTAGTCTGGGAACGAATTGAGACAACAAAGAACAATTATT
ACTCCTATATTCAGGggatatttttcagtttttgctcAGTCCTATCTTGG
TGTTTCTACTGTATAATAGCAAGAAGAGTAACAGAGACTACCCCCTTACA
AGTGACACTATTCTATATACACTTCACTGGACTGCTTATCTTACCCTTTT
CGCCTTGGATATTCAGTGCTAGCTTCGCACTGACCAGATCGCCTTTTGTT
TTCACGTATCTTCTACTAGGAGCTGGAGTTTCATATTTTCTATGTGTCAT
GTGCGAAGTGACCAGTATGAGATGTTTAAATGTTGCACTGATAATGATGT
TGAGGAATTCCGAAATTGTTTGGGCACTTTCATACGATATGGTAATCACA
CGTTTATTCCCAAACTGGGTAAGTAAGCTTCACTAATACAAATTCAGTAT
TCAAGCACAAAAATATAAGcatgaatgggcttttccagaaatagtctgca
ccccctatgttgaggaggtgcgaagtccagggtggtctggaaaataaaaa
aaccagggtggtcagtaaaatcgggttgaaaatccagggtggtcagcaTA
ACGAGGTCGGAAATCCAGAGTGGTCCAAAAAAATTGGAGAAAGAAATCCA
GAGTGTTCCAAAAAAATTGGAGAAAGAAACCCAGGGGGCTaccttttaaa
acaaaagatctcCTCAAAACAGGAGGTACAAatttatttctggaatagcc
caattctCCCTCTAATAACATTACTGAGAAAACTTCATACGAACGTATAT
ATTACTTACAATCCCCCTTGTAATATCTCCTGAAAAAAATCCTGCTATCC
TGGACGCAAATGTTTGAGAATAGCTGGAAATTGCTGCAAAGAAACAGTGG
AAAGAGACCCCGCTCCCCCAGagacaatagcgagtttatgtatttgcact
tttgaggacagtaaagtgactgaaatgatttggaaaaacccgcagttctg
acccacaatatcgaggacggtaaaagcgctgatttaccgtcgtcctcagt
tggtcatgatctagccaaattagaaccttacagTCTCCGCCGCTAAAAAA
CACACATAAATAAACTCGGTAATGTTGAGATTGGACGGCCGTCCAAGGAC
TCTCCACTGTCCTGTCAGCTAGCATTGTGGGAGAAAGAGTTCAAGCCCTA
CCTTCCTCTTACAATTTAAGTCCAGGATTGTGGTAGGAAAAAGTCTTATC
TCGATTTCAAACCGCACCGATTTGTAGTGGTTAAAATACCGGAATACTGA
CATAAAATAAGGCTAAATAAAGTTACTAATAAAGTTAATATCTCCACAAT
TCTCCAATCCAAGCTGCAATTTACTTCTagttttgtctattttcttttaa
gtcTCTAGTCTCCCAAGTTGTCGATAAGATAATAAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATTTTTTacata
ataatttatttatttatttagtttacttattataaataggacgaatagcc
attgAGATATATGGAAGTGCCTGAAATAcaattaataaataaaaaaaata
aaaaaaaataaattttaaaagacCGTTTTCCGgactcttttttcgtcaaa
tcctgtaataccgtactaaaaaagggttAATCCCGTTACACCATAAAAGT
ACAACACCCCCATTGTATCCAATACTATAATTTTGCTCCTCCACTCAAAT
TATTTGTTCGTTTACTTTACAGATTGTTATAATCGGCTTGTTGATTGTGA
TAGTGGCAACTTCAATGATTGCAGTCAATATGATTTATGATATCCCTTAT
TTGGCTACAATCAAACGTTGGGAATCTAAGATCTGCAAAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020277XLOC_020277Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034854-exon-sc0001227-1491911889:25314..25781TCONS_00034854-exon-sc0001227-1491911889:25314..25781Clytia hemisphaericaexon
TCONS_00034854-exon-sc0001227-1510915933:25314..25781TCONS_00034854-exon-sc0001227-1510915933:25314..25781Clytia hemisphaericaexon
TCONS_00034854-exon-sc0001227-1575043694:25314..25781TCONS_00034854-exon-sc0001227-1575043694:25314..25781Clytia hemisphaericaexon
TCONS_00034854-exon-sc0001227-1491911889:27136..27256TCONS_00034854-exon-sc0001227-1491911889:27136..27256Clytia hemisphaericaexon
TCONS_00034854-exon-sc0001227-1510915933:27136..27256TCONS_00034854-exon-sc0001227-1510915933:27136..27256Clytia hemisphaericaexon
TCONS_00034854-exon-sc0001227-1575043694:27136..27256TCONS_00034854-exon-sc0001227-1575043694:27136..27256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001227supercontigsc0001227:25314..27256 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0933625	0	0.0040143	0.103421	0	0.0994914	0.0101556	0.165047	0	0.0974514	0	0	0.492579	0.193451	0	0	0.350434	0.287347	0.0992464	0.415417	0.410395	0.155573	0.250341	0.621453	1.15716	0.683229	0.672044	0.423979	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034854 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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