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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003214 ID=TCONS_00003214|Name=TCONS_00003214|organism=Clytia hemisphaerica|type=transcript|length=2142bpRun BLAST on NCBI protein sequence of TCONS_00003214-protein >TCONS_00003214-protein ID=TCONS_00003214-protein|Name=TCONS_00003214-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp MEPSRELATQTHDQITLFKKNLPAPKLKNSCLIGGQNTRDQISELQQGVDRun BLAST on NCBI transcript from alignment at sc0000025:975306..993897- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003214 ID=TCONS_00003214|Name=TCONS_00003214|organism=Clytia hemisphaerica|type=transcript|length=18592bp|location=Sequence derived from alignment at sc0000025:975306..993897- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000025:975306..993897- >TCONS_00003214 ID=TCONS_00003214|Name=TCONS_00003214|organism=Clytia hemisphaerica|type=CDS|length=21120bp|location=Sequence derived from alignment at sc0000025:975306..993897- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003214 vs. Swiss-Prot (Human)
Match: DDX1 (ATP-dependent RNA helicase DDX1 OS=Homo sapiens GN=DDX1 PE=1 SV=2) HSP 1 Score: 700.664 bits (1807), Expect = 0.000e+0 Identity = 362/629 (57.55%), Postives = 458/629 (72.81%), Query Frame = 3
Query: 54 AIGEDGLLCQARQ-QRWQGARSTLGVVEGKYYYEVQITDEGLCRVGFSTDTAVFDVGTDNESFGFGGTGKKSYRRQFDTYGEPFGINDILGCYLNLEAGSISFSKNGNVFEKAFDIPKNLDNRAFFASVTLKNAELHFNFGNKPFKHPPAGHFQALCKA-------TKTIQSRRLSAPKKFTNICSPAALIMEPSRELATQTHDQITLFKKNLPAPKLKNSCLIGGQNTRDQISELQQGVDILTGTPGKIADFVDSGKLKLDQVRFLVFDEVDGLLNQNNGALIERLFNTCPKMSADGRRLQLIICSATLHNFDVKKLAEKIMHFPTWIDLKGQDSVPDTVHHTVCVVDPKVDTAWHFL-KPKIRTDGVHEQDDKHPSSTFPETYSEAVKVLKGEYVIKAIEKQNMDQGIIFCRTKLDCDNMERYLKQ------RNAQQFSCVCLHGDRNPKERGSNLQQFKDKQVKFLICTDVAARGLDIKGVPFVINVTLPDEKANYVHRIGRVGRADRMGLALSLVSKCREKVWYHKCESRGRNCRNTRLLEKGGCTIWYDEMKYLQDIEEHLGETITMVASDMNIPVNEFDGKVTYGKRRKREDDTKKYHQEELAPAVSELAVLEKQVQISYLNF 1895
AIG DGL CQ+R+ + W G R+T G+++GK+YYEV D+GLCRVG+ST A D+GTD FGFGGTGKKS+ +QFD YGE F ++D +GCYL+++ G + FSKNG AF+IP ++ N+A F + LKNAEL FNFG + FK PP F AL KA ++ + +++ K N +P ALI+EPSRELA QT + I FKK + PKL+ +IGG RDQ+S L+ GVDI+ GTPG++ D V +GKL L QVRFLV DE DGLL+Q I R+ N P++++DG+RLQ+I+CSATLH+FDVKKL+EKIMHFPTW+DLKG+DSVPDTVHH V V+PK D W L K IRTD VH +D+ P + PE +SEA+K+LKGEY ++AI++ MDQ IIFCRTK+DCDN+E+Y Q + QFSCVCLHGDR P ER NL++FK V+FLICTDVAARG+DI GVP+VINVTLPDEK NYVHRIGRVGRA+RMGLA+SLV+ +EKVWYH C SRG+ C NTRL E GGCTIWY+EM+ L +IEEHL TI+ V D+ +PV+EFDGKVTYG++R + K H + LAP V ELA LEK+ Q S+L+
Sbjct: 103 AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHL 729 The following BLAST results are available for this feature:
BLAST of TCONS_00003214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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