TCONS_00030324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030324
Unique NameTCONS_00030324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030324 ID=TCONS_00030324|Name=TCONS_00030324|organism=Clytia hemisphaerica|type=transcript|length=657bp
GGAAAAGCTAAATTCAGAAGAGTTGGGAGAATATCTTAGTCTTATATTCA
CTCCTGAACTGGCCAACAAACTGACGAGTCACGGTTTGAATGGAAAATTG
CTCTCGATTTTGATTCAATCTGAAAACAGATATCAAAGGTTGAAAGATGC
TGGACTAACCTTTAGGGAAGAGTTGGAGTTTCTTTCCGTTTTTAAAGAGA
AACCAGTGGACCAGACACCTAAAACATCAACTCCAACCAGGTCTAGGCTG
TCACAAATCAAAAAGAACATGCAGCACTCACAGATGCGGAAACAAATAAA
TGATAAATGGGGTGAAGATATTCCTGCAAATTTTGGTCGCGCAGAAGATA
ATGAAAAATTAGAGCAATTATTAAATACGCTTGAGAACAAGACACGCGAC
GAGATCCCTGCACTGACAGGCCTAGCTCGAGCAGAACGAAGGAAGATGAT
CATCGCTATTGTTAGAGAAAAACGAAAACCCGCAAAGAAAAATACTAACA
GCAATGCCAAGAAACGAATCCCCTTTGACAAgaatgcTGAAACACCCAGG
CATGAAACTGCAGCAACAAGTAAGACGGGCAATGGGCATTCTTGTTTCAA
TCCTCGAACAGTTCAAAGTGAGCCACCACAAAAGAAAAGGAAGGTAGGGA
CCATTAT
Run BLAST on NCBI

protein sequence of TCONS_00030324-protein

>TCONS_00030324-protein ID=TCONS_00030324-protein|Name=TCONS_00030324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
EKLNSEELGEYLSLIFTPELANKLTSHGLNGKLLSILIQSENRYQRLKDA
GLTFREELEFLSVFKEKPVDQTPKTSTPTRSRLSQIKKNMQHSQMRKQIN
DKWGEDIPANFGRAEDNEKLEQLLNTLENKTRDEIPALTGLARAERRKMI
IAIVREKRKPAKKNTNSNAKKRIPFDKNAETPRHETAATSKTGNGHSCFN
PRTVQSEPPQKKRKVGTI
Run BLAST on NCBI

transcript from alignment at sc0000809:122540..124392+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030324 ID=TCONS_00030324|Name=TCONS_00030324|organism=Clytia hemisphaerica|type=transcript|length=1853bp|location=Sequence derived from alignment at sc0000809:122540..124392+ (Clytia hemisphaerica)
GGAAAAGCTAAATTCAGAAGAGTTGGGAGAATATCTTAGTCTTATATTCA
CTCCTGAACTGGCCAACAAACTGACGAGTAAGTTTATTTTCCTTCATAGT
TTTAacgattttcaaaattaaaagcaATTCTTCTCTGTTACTTATATTTT
ATTTActgtatttcttttttcttaccTACCAGTACCCATATTAAGTAAAT
AACAGTAACTTTTGCTATAACCTTATCTGAAACGCTATTCCAAGTAACCG
TACCGGGTACCATAAGTAAGTAAGATCAACCCTCTAGCCTAGTAAGGTAC
GGCTCGAACATATACGTCTCTAAAATTTTCAGGTCATGTTACAGCCTAAA
ATAGCAGAAGGTTATTTTGTCCCAAACATTGCCGCAAAATAGTTTCAGAT
TGCTGAAAACCTAGCCCAAACATACTCTGAACATACACTGGCCAGGCAAT
TCGGGTCATGTTTTGGCCTTTTTCTTACAAGTTTAAAAAGTTCTAAGTCT
CCCTAAAAGAGTATGAGTCCTACTTTGAGTTGTAGGGTAAGGTAATGCAC
AAATGAAATGTTTTATTGCTATCAAAATCTCTATTTACAGGTCACGGTTT
GAATGGAAAATTGCTCTCGATTTTGATTCAATCTGAAAACAGATATCAAA
GGTTGAAAGATGCTGGACTAACCTTTAGGGAAGAGTTGGAGTTTCTTTCC
GTTTTTAAAGAGAAACCAGTGGACCAGACACCTAAAACATCAACTCCAAC
CAGGTCTAGGCTGTCACAAATCAAAAAGAACATGCAGTAAGTTTCAATTT
CTTTGACTTCtttgaaattgtaaaatttttcatttcttcataTCCAGCGA
GTGAATCCAAATAAGAAACTGTACTTTACAACTGGTTGAAATTCCAGCAA
TTTTGAGTTTATATCCAATTTTGCATGTATTCCTGTGTATTCATTTATTT
TAAAGTCTGTTCCACCGAAAAGGATTATTCTCAATGTTAATTGTGTGAAG
GTTAAGATGAAATAATTTGCTTTTCATATTAAAATATTGCGCTGCAggca
aaatttttcaacttcatgATTTTTAATTTGAGTGATTAAAACCAACCATT
AGATGAAGTATTCAGCACCCACGTTAAACAATGAAATTTTATCCCCCACC
TATTTCAGGCACTCACAGATGCGGAAACAAATAAATGATAAATGGGGTGA
AGATATTCCTGCAAATTTTGGTCGCGCAGAAGATAATGAAAAATTAGAGC
AATTATTAAATACGCTTGAGAACAAGACACGCGACGAGATCCCTGCACTG
ACAGGCCTAGCTCGAGCAGAACGAAGGAAGATGATCATCGCTATTGTTAG
AGAAAAACGAAAACCCGCAAAGGTAATTCTTAATCCTCTGATGTTCCTCT
AAATTTTAGGCTGATACATTTGATTGAATGGAAAATTTAGTGTACTGTCT
CTTTTCCTTTGCTTTTATATCTATTTTTGTAtcaattctttgttgtttgt
tttttatccaGAAAAATACTAACAGCAATGCCAAGAAACGAATCCCCTTT
GACAAggtaatttttactttttattcattttgctTGCTCTCATCGGTTTA
AGTCCCAAGAACTGAGGTCAtacaaattttccttttttgattgAGCGTTG
GACATGAAGTAAAGCTTGTCAactattatttaattatcccttcttttttg
aaaatgctttaaaatatttcttttttagaatgcTGAAACACCCAGGCATG
AAACTGCAGCAACAAGTAAGACGGGCAATGGGCATTCTTGTTTCAATCCT
CGAACAGTTCAAAGTGAGCCACCACAAAAGAAAAGGAAGGTAGGGACCAT
TAT

Coding sequence (CDS) from alignment at sc0000809:122540..124392+

>TCONS_00030324 ID=TCONS_00030324|Name=TCONS_00030324|organism=Clytia hemisphaerica|type=CDS|length=3270bp|location=Sequence derived from alignment at sc0000809:122540..124392+ (Clytia hemisphaerica)
GAAAAGCTAAATTCAGAAGAGTTGGGAGAATATCTTAGTCTTATATTCAC
TCCTGAACTGGCCAACAAACTGACGAGTCACGGTTTGAATGGAAAATTGC
TCTCGATTTTGATTCAATCTGAAAACAGATATCAAAGGTTGAAAGATGCT
GGACTAACCTTTAGGGAAGAGTTGGAGTTTCTTTCCGTTTTTAAAGAGAA
ACCAGTGGACCAGACACCTAAAACATCAACTCCAACCAGGTCTAGGCTGT
CACAAATCAAAAAGAACATGCAGCACTCACAGATGCGGAAACAAATAAAT
GATAAATGGGGTGAAGATATTCCTGCAAATTTTGGTCGCGCAGAAGATAA
TGAAAAATTAGAGCAATTATTAAATACGCTTGAGAACAAGACACGCGACG
AGATCCCTGCACTGACAGGCCTAGCTCGAGCAGAACGAAGGAAGATGATC
ATCGCTATTGTTAGAGAAAAACGAAAACCCGCAAAGAAAAATACTAACAG
CAATGCCAAGAAACGAATCCCCTTTGACAAgaatgcTGAAACACCCAGGC
ATGAAACTGCAGCAACAAGTAAGACGGGCAATGGGCATTCTTGTTTCAAT
CCTCGAACAGTTCAAAGTGAGCCACCACAAAAGAAAAGGAAGGTAGGGAC
CATTGAAAAGCTAAATTCAGAAGAGTTGGGAGAATATCTTAGTCTTATAT
TCACTCCTGAACTGGCCAACAAACTGACGAGTCACGGTTTGAATGGAAAA
TTGCTCTCGATTTTGATTCAATCTGAAAACAGATATCAAAGGTTGAAAGA
TGCTGGACTAACCTTTAGGGAAGAGTTGGAGTTTCTTTCCGTTTTTAAAG
AGAAACCAGTGGACCAGACACCTAAAACATCAACTCCAACCAGGTCTAGG
CTGTCACAAATCAAAAAGAACATGCAGCACTCACAGATGCGGAAACAAAT
AAATGATAAATGGGGTGAAGATATTCCTGCAAATTTTGGTCGCGCAGAAG
ATAATGAAAAATTAGAGCAATTATTAAATACGCTTGAGAACAAGACACGC
GACGAGATCCCTGCACTGACAGGCCTAGCTCGAGCAGAACGAAGGAAGAT
GATCATCGCTATTGTTAGAGAAAAACGAAAACCCGCAAAGAAAAATACTA
ACAGCAATGCCAAGAAACGAATCCCCTTTGACAAgaatgcTGAAACACCC
AGGCATGAAACTGCAGCAACAAGTAAGACGGGCAATGGGCATTCTTGTTT
CAATCCTCGAACAGTTCAAAGTGAGCCACCACAAAAGAAAAGGAAGGTAG
GGACCATTGAAAAGCTAAATTCAGAAGAGTTGGGAGAATATCTTAGTCTT
ATATTCACTCCTGAACTGGCCAACAAACTGACGAGTCACGGTTTGAATGG
AAAATTGCTCTCGATTTTGATTCAATCTGAAAACAGATATCAAAGGTTGA
AAGATGCTGGACTAACCTTTAGGGAAGAGTTGGAGTTTCTTTCCGTTTTT
AAAGAGAAACCAGTGGACCAGACACCTAAAACATCAACTCCAACCAGGTC
TAGGCTGTCACAAATCAAAAAGAACATGCAGCACTCACAGATGCGGAAAC
AAATAAATGATAAATGGGGTGAAGATATTCCTGCAAATTTTGGTCGCGCA
GAAGATAATGAAAAATTAGAGCAATTATTAAATACGCTTGAGAACAAGAC
ACGCGACGAGATCCCTGCACTGACAGGCCTAGCTCGAGCAGAACGAAGGA
AGATGATCATCGCTATTGTTAGAGAAAAACGAAAACCCGCAAAGAAAAAT
ACTAACAGCAATGCCAAGAAACGAATCCCCTTTGACAAgaatgcTGAAAC
ACCCAGGCATGAAACTGCAGCAACAAGTAAGACGGGCAATGGGCATTCTT
GTTTCAATCCTCGAACAGTTCAAAGTGAGCCACCACAAAAGAAAAGGAAG
GTAGGGACCATTGAAAAGCTAAATTCAGAAGAGTTGGGAGAATATCTTAG
TCTTATATTCACTCCTGAACTGGCCAACAAACTGACGAGTCACGGTTTGA
ATGGAAAATTGCTCTCGATTTTGATTCAATCTGAAAACAGATATCAAAGG
TTGAAAGATGCTGGACTAACCTTTAGGGAAGAGTTGGAGTTTCTTTCCGT
TTTTAAAGAGAAACCAGTGGACCAGACACCTAAAACATCAACTCCAACCA
GGTCTAGGCTGTCACAAATCAAAAAGAACATGCAGCACTCACAGATGCGG
AAACAAATAAATGATAAATGGGGTGAAGATATTCCTGCAAATTTTGGTCG
CGCAGAAGATAATGAAAAATTAGAGCAATTATTAAATACGCTTGAGAACA
AGACACGCGACGAGATCCCTGCACTGACAGGCCTAGCTCGAGCAGAACGA
AGGAAGATGATCATCGCTATTGTTAGAGAAAAACGAAAACCCGCAAAGAA
AAATACTAACAGCAATGCCAAGAAACGAATCCCCTTTGACAAgaatgcTG
AAACACCCAGGCATGAAACTGCAGCAACAAGTAAGACGGGCAATGGGCAT
TCTTGTTTCAATCCTCGAACAGTTCAAAGTGAGCCACCACAAAAGAAAAG
GAAGGTAGGGACCATTGAAAAGCTAAATTCAGAAGAGTTGGGAGAATATC
TTAGTCTTATATTCACTCCTGAACTGGCCAACAAACTGACGAGTCACGGT
TTGAATGGAAAATTGCTCTCGATTTTGATTCAATCTGAAAACAGATATCA
AAGGTTGAAAGATGCTGGACTAACCTTTAGGGAAGAGTTGGAGTTTCTTT
CCGTTTTTAAAGAGAAACCAGTGGACCAGACACCTAAAACATCAACTCCA
ACCAGGTCTAGGCTGTCACAAATCAAAAAGAACATGCAGCACTCACAGAT
GCGGAAACAAATAAATGATAAATGGGGTGAAGATATTCCTGCAAATTTTG
GTCGCGCAGAAGATAATGAAAAATTAGAGCAATTATTAAATACGCTTGAG
AACAAGACACGCGACGAGATCCCTGCACTGACAGGCCTAGCTCGAGCAGA
ACGAAGGAAGATGATCATCGCTATTGTTAGAGAAAAACGAAAACCCGCAA
AGAAAAATACTAACAGCAATGCCAAGAAACGAATCCCCTTTGACAAgaat
gcTGAAACACCCAGGCATGAAACTGCAGCAACAAGTAAGACGGGCAATGG
GCATTCTTGTTTCAATCCTCGAACAGTTCAAAGTGAGCCACCACAAAAGA
AAAGGAAGGTAGGGACCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017370XLOC_017370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030324-exon-sc0000809-1491911889:122540..122616TCONS_00030324-exon-sc0000809-1491911889:122540..122616Clytia hemisphaericaexon
TCONS_00030324-exon-sc0000809-1510915933:122540..122616TCONS_00030324-exon-sc0000809-1510915933:122540..122616Clytia hemisphaericaexon
TCONS_00030324-exon-sc0000809-1575043694:122540..122616TCONS_00030324-exon-sc0000809-1575043694:122540..122616Clytia hemisphaericaexon
TCONS_00030324-exon-sc0000809-1491911889:123130..123325TCONS_00030324-exon-sc0000809-1491911889:123130..123325Clytia hemisphaericaexon
TCONS_00030324-exon-sc0000809-1510915933:123130..123325TCONS_00030324-exon-sc0000809-1510915933:123130..123325Clytia hemisphaericaexon
TCONS_00030324-exon-sc0000809-1575043694:123130..123325TCONS_00030324-exon-sc0000809-1575043694:123130..123325Clytia hemisphaericaexon
TCONS_00030324-exon-sc0000809-1491911889:123698..123911TCONS_00030324-exon-sc0000809-1491911889:123698..123911Clytia hemisphaericaexon
TCONS_00030324-exon-sc0000809-1510915933:123698..123911TCONS_00030324-exon-sc0000809-1510915933:123698..123911Clytia hemisphaericaexon
TCONS_00030324-exon-sc0000809-1575043694:123698..123911TCONS_00030324-exon-sc0000809-1575043694:123698..123911Clytia hemisphaericaexon
TCONS_00030324-exon-sc0000809-1491911889:124051..124095TCONS_00030324-exon-sc0000809-1491911889:124051..124095Clytia hemisphaericaexon
TCONS_00030324-exon-sc0000809-1510915933:124051..124095TCONS_00030324-exon-sc0000809-1510915933:124051..124095Clytia hemisphaericaexon
TCONS_00030324-exon-sc0000809-1575043694:124051..124095TCONS_00030324-exon-sc0000809-1575043694:124051..124095Clytia hemisphaericaexon
TCONS_00030324-exon-sc0000809-1491911889:124268..124392TCONS_00030324-exon-sc0000809-1491911889:124268..124392Clytia hemisphaericaexon
TCONS_00030324-exon-sc0000809-1510915933:124268..124392TCONS_00030324-exon-sc0000809-1510915933:124268..124392Clytia hemisphaericaexon
TCONS_00030324-exon-sc0000809-1575043694:124268..124392TCONS_00030324-exon-sc0000809-1575043694:124268..124392Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030324-proteinTCONS_00030324-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000809supercontigsc0000809:122540..124392 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.158383	0.0772241	0	0	0	0.0843901	0	0	0	0	0	0	0	0	0	0	0.118897	0	0	0	0.0765667	0	0	0	0	0	0	0	0	0.0895524
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top