TCONS_00030283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030283
Unique NameTCONS_00030283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030283 ID=TCONS_00030283|Name=TCONS_00030283|organism=Clytia hemisphaerica|type=transcript|length=483bp
CAGCGGAATTTGGCAGAAACGTGGAAATGTATTgagagaaaaaataattt
atgaaaattcgGAAAACCTCTGCAAGCTCGtattaattctttttttcgtt
ttttacctTTCTAGGAGAAGAAGAACGAACCGTCATCAGGAGGAGGCACT
TACCAAATCACTAAGACAACACACCAAACTCGTATCGTCAGTAGCAGCAC
GAGAACGATAAGCACGACGAGCAGTGAAGAACCTTACGACGAACGAGATa
ATGGGTTAAGAGGAGCAGCATTGAAAAAAGGTGTTGGCTTCAACAAATTG
CAACAACGAAAACAAATGAAAGAGAATTCACTGGCAAGGcCATCTGCAAA
CGGGCATGAAAATTTAGACCCAGAAATTCTAAGGAAATTCAACGCTGATC
CCAATGGAAATACCTACCCATACGAGATGTTAAAGACTAGTAGCTTTAAG
ACACCATATAATGTCGACAAACATAAACTTGAG
Run BLAST on NCBI

transcript from alignment at sc0000805:98741..103612-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030283 ID=TCONS_00030283|Name=TCONS_00030283|organism=Clytia hemisphaerica|type=transcript|length=4872bp|location=Sequence derived from alignment at sc0000805:98741..103612- (Clytia hemisphaerica)
CAGCGGAATTTGGCAGAAACGTGGAAATGTATTGAGAGAAAAAATAATTT
ATGAAAATTCGGAAAACCTCTGCAAGCTCGTATTAATTCTTTTTTTCGTT
TTTTACCTTTCTAGGAGAAGAAGAACGAACGTAAGTGAAGTTGAATACAA
TCCTTTTGTTTCATTTAAATTGTAACACATCTAACAGCTCATTACACGAA
CTACTAAACTCTAATTGAATGACACTAATAAAATGATTAATAAATCGAGG
TGAACATACACATAAACCCTAACAAATAGCTTAGTCAGCAATAAAAACAA
CTACATATGAAAATATATCGTTTGAGACCAAATAAACAATTTATTACAAT
TTGAAGAGATTTTTTATGACAGTGAATTTTCTGAGTCTGTAACGAAATTG
ATACATACTGTGTGAGTCCTACAATAAACATTTGAACAGGTAACCTGAGA
AATAAAATATTAACGATTTCAACAATGGACGCCAGATGACAAACATACTT
TGACAATTCAACAAGCATTAACGTAATAAATTTTTGTGAACATGTAAATT
TATTAACAAAAATATTGAACTATTAAACTAACACCTCTTTTATTTATAAC
GAATAACAGACCATTTAGCTCAGATTGATTTTTAATAAATTTCTCAAATT
AATATCACTAAAATCCTTTGCAGTACCAACACCAGCTCAACAAAAACCTG
TGCCAGTAATTCATAAACCAACTACTAAACCATCCAGCAATGCTTACTCA
GCAAGAAAATCACGACCTTTGTCTTTTGTCGAATCTGCAGCCGCAAGGGC
TTCAAGTAAGGATACTAATCAGTAACTTGGTAAAAATAAACCCTTGATCT
ACTAATCTAAATTAAGCCACACAATTTTAGACCAGCCTTATTATTTAACA
ATCAGCTTTCTAGCTCAGTCCATACAATATGTGGGTTTTGCTCCAAATAT
ATACTGTATCTATTTAAACTTGATTCATGATATGCACCATTGCAATGTCT
TCCACGGACCCAACAGCTGATTGGTTGAAAGTGACGTATTGATTGACTTT
ACGTCACTTTTAACCAATCAGCTTTTGGGTCCGTGATGTAATGTCAGAAG
ACATTGCAATGGTGCATATCATTGATTGATTGATTGATTGATTGATTGAT
TGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTG
ATTGATTGATTGATTGATTGATTTTATCTTAGCGTCATCAGGAGGAGGCA
CTTACCAAATCACTAAGACAACACACCAAACTCGTATCGTCAGTAGCAGC
ACGGTATGTGGAAGTTACATTAACTTTTAAACATATTTTCTTCGACCTTT
TCCGTTGTATGCAGTTGAGCCTCCTTAATTCGAAATGTCTCCTTGATTCG
AACAAGTTTTATGGTGCCTTCTGTTTACAATGTCTTACAAATCTTACTCC
ATAACTCGAAATTTCCTTAACTCGAACAGATTTGTGTTACCCGTGTGTGT
TTGAGTTATGGAGACTCCAGTTTATATGAGATTTTACAAAACAGAGGCTG
ATATGGATTTTAATCTTGGATTGTTAAGTTTCATTCACTATTCCCATAAC
TTTAAAGCTCAAGCCCGTAACAAGCCCTGTCCTTCACTAAGTATTAAAAT
TTTCCCATTTCAACCATTGCAATTATCTGACGCATTCGAATTTACAAATT
TAATTGCTAGCTTTGGCCTTGTCTAGTCAACATCATTATTGCAAAAAGAA
TAAAATTTCGACCCAGGTGTTTTGTTTCGAAAGTGTAAATTGTTTTTTCT
CATAGAGAACGATAAGCACGACGAGCAGTGAAGAACCTTACGACGAACGA
GATGTAAGAAATCAGTTGCCATTGTTCATAATACTTGATTTTTACCTCAC
TGTAGAATGGCCTCGTATCGTTATGTGATCGTTACAATCCACATTCTACT
TTATTTCTTTTCCCTCTGCAATTAATACTGAATTCATGTAAGAGTGATGT
AAGCTCAGTTGGTTAAGCGTGTCTTGCAATACAAAGGTGTTTAAGGTACT
GATTCGACCCTCTGCGGCTCTTGTCGAAATCTCATTACCGTTCTCCATTA
TGATGAATAAAAATCAAGGAGTTTGGCGATGGCCATCAGTTACCGTCTAA
AAATTGGACATACTGCTGAATGCAGACCCACATCGACGCTTCTGTGTCAC
AGACCAGCTTTGACCCCAGCCCCACTGGAAAATTTGGCAAACATTTCGTC
CACGTTGGAAAAATAACATTTCAGTCCCACGGGGAAATTGATTTCGATTA
CACCCCTATTAGAAATTCAATGCTTGAAAATTGCACTCCGAAACCATCCC
CACTGGATTTTTTAACCTTGTGTCAAGGTTCGGCGATGAGATGAACAGAG
GTCACCAGCTACCGTCTAAAAATCGGAAATACTACTGAATGCAGACCCAC
AAACATGACCTGGGTAAAATAAATTAACAATAATGAAAAACATTCATTTC
TTCTTTTTCTAGAATGGGTTAAGAGGAGCAGCATTGAAAAAAGGTGTTGG
CTTCAACAAATGTATATATTTTCTCCCCTTTTAAGTATTTTCAATGTCTT
GCTGTAATCAACACAAAAGAAAAATATTTGGTGTCTTTTTCGACTGAATT
CTTGAGAGTACGATGAAAATAGGAGTCAGTTTTTGTCTTTATAGGGCTGT
GTTACGTTGTCTTTTTTTCTCAATTCTTGAGAGAACGATTAAAATCGGAG
TCAATTTAGTGCTTTGTCTCTAGAGGGTTGTGTTCCCTAGTAAGAACGAC
TATTCTATTACCATTATGTCATTTTCCTTCATTTTACTTTAGTGCAACAA
CGAAAACAAATGAAAGAGAATTCACTGGCAAGGGTTAGTCTTCACTTTTA
TTTCTTTCCTATTCATATGCATCATTGCAATGCCTTCCATTCCACCCAAT
AGCTGATTGGTTCAAAGTGACGTATTGACTGATTTTACGTCACTTACAAC
CAATCAGCTGTTGGGTCCGTGATGTAATGTCAGAAGACATTGCAGTGGTG
CATATCATGAATTCATATGCATCATTGCAATATCTTCTGACAACATCGCG
GACCCATCAGCTGATTGGTTGCAAGTGACATAAGAAAGACCCGTCAATAA
TCACTTGTAACCAATCAGCTGTTGGGGTCTTGATGTAATGTCAGGAAGAC
ATTGTAGTGGTGCATATCATGAATAAACTAAAATTATTTATCTATACCCC
ATTTTTCAGAAGCCTAACGTTTTATGGGGAGAAATTGAAACTGGATACTT
GAACCAATTAAAATGTTCATCCCGGGTTCACGCTTTATTAATTGGTTTTG
TTTTATGTTTTAGCCATCTGCAAACGGGCATGAAAATTTAGGTATGTCTT
AAATTCCTTTGCTTTCGACTTTTTCACCTCTTTTAGTAGGGGGCTAATCC
TTATGATCCGTAGCATCTTTCGTGGGACTCAACCGCATGTGATTGGTTTG
AAATAAGATAGGATTTTGAAATTTTTGGAGAGGGGGCCCATGGATAAGGC
CTGGGAACAGTTTTTATGGCCAAAAAGCTGACGTTGTAAGCAAAATTTTA
CCCCAAAAATTGGCGAAAAATTGAATTAAAACAAAAAGATCGATACCATC
AAATAGAGCATGAAATTCTGAGCAAAGAAGTATACTACAGCAAGTCTTAT
ACTAAAACACACAAAAAGATATGATAAAAACTTTGAAATCCTGTGAAATC
TGTTGCGTTTTAGACAACATTTGACGTCAATCGTACTCTAACTGACAGAA
TTTTGAACTTCAAAAGCCTGTATTTCTCGATATATTTGAGTACTACAAGG
CTTGTTTTAGTATACCTTTTTGCTCTGAAAAGTGGGAATGAAACCATTGC
TACAACTGATAAATGAATAGCAAGCAATATTATACTGTTCATGATGTTAT
TTTCACTTCTTTTTAGACCCAGAAATTCTAAGGAAATTCAACGCTGATCC
CAATGGAAATGTAAGTCTTCAGTGTTTTTTTGGAACTATTCTATTATTTT
TACTTTTGTTTTTTAGAAGCAATACTTTTTCCATTGAAATTTAAAGATGG
TTCAGCATGATTTAGTTCGCTTTTAAACAACCCGTTGGCGTTGGCGTATT
CATTTTCCAAATACTCTTCCGAGACCAGTATTATGTTTACAACAACCACC
CCTTTTTCCAGCTTGCATGACTTTTCAATCACGTGTTTGCCTTGTGGAAA
CTAACTTCGTTTCCTTAGAGGCTTGAAGAATATCTTTCAATGAGGATTTC
TTCAAATTCAAAACACCCCACTTTTTGGTATGGAAAGTCGAATTCAAAAT
GAATTCTTCTGCTTCCTACCATTTAACCTTTTGAAGCCTTAAAAGTAAAA
AGTATTAAATTTTGCAAATGCGATAAATTTGCTCGGTGCTTTAACTGTCT
CAATAACTCTTAAAGCAATAACTTTCATACGATTAAAACGTTATTAAACT
TTTTTTTAAAATGTATGAATATTAAATAGATGTCAAGATGAGATGACATT
TTAAACCTTGTAGACTATGTAAGGACTGAAAGACTAAATACCACTAAACC
AATTAAAATTATTTAAAGAATTTTGAAATAGTTGCAGTCGCACTTGGTAA
TCTGCACGTAATTGCACTCTAGCATGTACATCAACTTGCTATCCATTCAT
TCATTCTTCCATTCTCGTATCCATTCATCATGCAGTCACTCATTCTCAAC
ACATAAACTCTAATAAAAATAGCTTCAAATTTGAAATATATTGTGTTTAG
ACCTACCCATACGAGATGTTAAAGACTAGTAGCTTTAAGACACCATATAA
TGTCGACAAACATAAACTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017339XLOC_017339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030283-exon-sc0000805-1575043694:103483..103612TCONS_00030283-exon-sc0000805-1575043694:103483..103612Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1575043694:102310..102380TCONS_00030283-exon-sc0000805-1575043694:102310..102380Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1575043694:101760..101807TCONS_00030283-exon-sc0000805-1575043694:101760..101807Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1575043694:101052..101100TCONS_00030283-exon-sc0000805-1575043694:101052..101100Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1575043694:100730..100770TCONS_00030283-exon-sc0000805-1575043694:100730..100770Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1575043694:100222..100249TCONS_00030283-exon-sc0000805-1575043694:100222..100249Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1575043694:99603..99646TCONS_00030283-exon-sc0000805-1575043694:99603..99646Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1575043694:98741..98812TCONS_00030283-exon-sc0000805-1575043694:98741..98812Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1510915933:103483..103612TCONS_00030283-exon-sc0000805-1510915933:103483..103612Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1510915933:102310..102380TCONS_00030283-exon-sc0000805-1510915933:102310..102380Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1510915933:101760..101807TCONS_00030283-exon-sc0000805-1510915933:101760..101807Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1510915933:101052..101100TCONS_00030283-exon-sc0000805-1510915933:101052..101100Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1510915933:100730..100770TCONS_00030283-exon-sc0000805-1510915933:100730..100770Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1510915933:100222..100249TCONS_00030283-exon-sc0000805-1510915933:100222..100249Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1510915933:99603..99646TCONS_00030283-exon-sc0000805-1510915933:99603..99646Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1510915933:98741..98812TCONS_00030283-exon-sc0000805-1510915933:98741..98812Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1491911889:103483..103612TCONS_00030283-exon-sc0000805-1491911889:103483..103612Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1491911889:102310..102380TCONS_00030283-exon-sc0000805-1491911889:102310..102380Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1491911889:101760..101807TCONS_00030283-exon-sc0000805-1491911889:101760..101807Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1491911889:101052..101100TCONS_00030283-exon-sc0000805-1491911889:101052..101100Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1491911889:100730..100770TCONS_00030283-exon-sc0000805-1491911889:100730..100770Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1491911889:100222..100249TCONS_00030283-exon-sc0000805-1491911889:100222..100249Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1491911889:99603..99646TCONS_00030283-exon-sc0000805-1491911889:99603..99646Clytia hemisphaericaexon
TCONS_00030283-exon-sc0000805-1491911889:98741..98812TCONS_00030283-exon-sc0000805-1491911889:98741..98812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000805supercontigsc0000805:98741..103612 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.122416	0	0.433179	0	20.952	15.6745	19.0762	19.8568	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9.54765	12.8296	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top