TCONS_00030252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030252
Unique NameTCONS_00030252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1086

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030252 ID=TCONS_00030252|Name=TCONS_00030252|organism=Clytia hemisphaerica|type=transcript|length=1086bp
CAGCTGAGTTGAATGTATTGGATTAAATACTTGGACAACCTAATTATTCA
AACTCATtctcaataaaataaaattttaggtgtttactgtaattagaaaa
aataagatttgatcAGAATCTTAACGATGGAAGCAATATCAGAATTCTAC
AAATGGGCTGAATCGATCAGTGATCCAAGAGTTGCAGATTGGTTTCTTAT
ACCCAGTCCTCTCCCAACTTATTCGATGTCTTTTTTCTACATAATATTTT
CATGGAAAATTGGTCCATATCTTATGCACAACAGAGAACCcttcaatttg
aaatatttgctgatCATTTATAATTTATCAATGGTTTACTTGAATTACCA
TATTTTCAAGGAGCTCTTATTTGGAATGCTGGAAGCTGGTTATTCATACC
CATGTCAACCCTTCCTAACTTCTACAAGACCTGTCGATTTCAGGATTGCC
AGAGCTCTGTGGTGGTACTTTgcatcgaagttgatcgaatttattgacac
tTTGTTTTTCATCTTGCGCAAGAAGGATAATCAGATTTCATTTTTGCACG
TTTATCATCATGCCACTATGCCCATGTTGTGGTGGATTGGCACCAAATGG
GTTCCTGCTGGACAGTCTGCACCCGCTGCCATCATGAACGCATTCATCCA
TATTATCATGTATTTTTATTACGGGATGGCTGCTTTCGGTCCTTCGCTTC
AAAAATACCTCTGGTGGAAGAGATACCTTACACAAATGCAACTGATTCAA
TTTTGTATAGCATTGGGAACGGCAACGTATTCTTTGTACAGTGGCTGTGA
TTTCCCACGTTGGATGAGCTGGGCGTTGATCCTCTATATGAtctcttttc
tcgttttgtTCGGTAACTTTTACATTCAAGCATActtaacaaaaaagaaa
aagaaaaatgacgaACTCAGAAATGGCAAAATGAAGACTTCTGTTAAAGG
AACGAGTAGAGACAATAATGGGGAATTAAGATCTAGGAACAAAATCTCAT
CCTAATTTATAATTATATTTAcagttcgagttatagagtaaggtttataa
ggcattgatAACTGAAGGGAcgggaaaactttttcg
Run BLAST on NCBI

protein sequence of TCONS_00030252-protein

>TCONS_00030252-protein ID=TCONS_00030252-protein|Name=TCONS_00030252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MEAISEFYKWAESISDPRVADWFLIPSPLPTYSMSFFYIIFSWKIGPYLM
HNREPFNLKYLLIIYNLSMVYLNYHIFKELLFGMLEAGYSYPCQPFLTST
RPVDFRIARALWWYFASKLIEFIDTLFFILRKKDNQISFLHVYHHATMPM
LWWIGTKWVPAGQSAPAAIMNAFIHIIMYFYYGMAAFGPSLQKYLWWKRY
LTQMQLIQFCIALGTATYSLYSGCDFPRWMSWALILYMISFLVLFGNFYI
QAYLTKKKKKNDELRNGKMKTSVKGTSRDNNGELRSRNKISS
Run BLAST on NCBI

transcript from alignment at sc0000803:66221..68874-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030252 ID=TCONS_00030252|Name=TCONS_00030252|organism=Clytia hemisphaerica|type=transcript|length=2654bp|location=Sequence derived from alignment at sc0000803:66221..68874- (Clytia hemisphaerica)
CAGCTGAGTTGAATGTATTGGATTAAATACTTGGACAACCTAATTATTCA
AACTCATTCTCAATAAAATAAAATTTTAGGTGTTTACTGTAATTAGAAAA
AATAAGATTTGATCAGAATCTTAACGATGGAAGCAATATCAGAATTCTAC
AAATGGGCTGAATCGATCAGTGGTAAGTTCAGGGAAAGATAACGGTGTTA
ATAATAATAGTATAGAGACATTATTTCTTTAAATCTATCAATAACTTATT
TTTGTTCCAAAGCTTTAATCAGGGTAAATTTAAATACCATAACTTCGTGT
AATGCTGACATACCTTGACATACCTTGTCTAATTCAGTCATAGCAACTTT
TTAGTCTTTAAAATGTTTATCAATAAAACCTTCTAAATAAGCTGTTCAAA
AAAAATCAGTCTAACTACTTGTAACTACTTTGCAGACCAGATAGTTGCTA
TGGCGAAATTATTTATACTGTTTTCTTTATGATTTCTTTTAGATCCAAGA
GTTGCAGATTGGTTTCTTATACCCAGTCCTCTCCCAACTTATTCGATGTC
TTTTTTCTACATAATATTTTCATGGAAAATTGGTCCATATCTTATGCACA
ACAGAGAACCCTTCAATTTGAAATATTTGCTGATCATTTATAATTTATCA
ATGGTTTACTTGAATTACCATATTTTCAAGGAGGTTGGTACTATGTGTTC
ACAAATTGAAAATCAACATAGTATATACCTATCCTCATAAGAATCATTTA
CAACTAAGAGTAACACTTTATTATGACTGTAGAATCCTCACTCTTTGATC
ATCAAAAGTAGTTTTTTTCAAATGCATCCATTCGGAATTATTAAAATGTT
AGCTAAAGTTTTTAGGAAAAGTGCTGAAAAGTGTTAAAATCATGATATTG
AAATTTCTATTTAAAAGCTCTTATTTGGAATGCTGGAAGCTGGTTATTCA
TACCCATGTCAACCCTTCCTAACTTCTACAAGACCTGTCGATTTCAGGGT
AAATCTTGTTAAAATTTTGTTTGTGAAATGAATCTGGAATGAACCGTTTG
CTTGATCTGCTCTTTTGAAAAATTTATGCTTCTGCCAAGATTTTGACATG
TCAGCATTTATAAATTGCATTATATAAAGCTTTTGTTGAACTTTCAATTA
TATGTTTTAAAATAAGAGCCACAATTTATTGATCATTTCTAAACGGAATA
GACACAGAGATGTGAATTGGGAATTATGTTATATCCACCTTCTTAGCTTT
TATCATAAATTGGGATCAATTTTAGATTCATTAAAAATTACTGGCACTTG
CATTCAACTTTATCACGGTAGTGTCTATTGGTTATCGGTTAATTTTTCTG
TTTATTTATAAATTCAACAGATTGCCAGAGCTCTGTGGTGGTACTTTGCA
TCGAAGTTGATCGAATTTATTGACACTGTAAGTTAAATGATTTCTTCATT
CGTGTTAAGATAAGGGTCACTTCATGAGCAGTTTTATCTGAATGAAGAAT
TACAATTTTTCGAGTCTAACATTTACAGTTGCCTAGTAAAATTCTTTCAC
TAAGATACTATTTCTAAAATGAAAATGCGGATTGTGTGAGTCTTTCTTTG
AGTCGAATTTCTAAGCTATCATGCATTTACCATCTTCCTTTTCCTTTACA
GTTGTTTTTCATCTTGCGCAAGAAGGATAATCAGATTTCATTTTTGCACG
TTTATCATCATGCCACTATGCCCATGTTGTGGTGGATTGGCACCAAATGG
GTTCCTGCTGGACAGTGTGAGTACATTATTTTCAGTTTTATCGCTTCTCG
AACTTCTACAAATTCGAAAACGCACGTTCTATATGAACTAGGGGTAGTGA
GCAATAGATTTTTGAGATTTTCCGTGCCACTTTTTATTTCAAACTGAAAC
ATTGCATTAATCTCTTTATATTTCTTCATATATAAGATTAAGTCGTTGGC
TGTACAGCCAAACTTCCTTACGAATAAAACACTTTTCGATTTTAGCTGCA
CCCGCTGCCATCATGAACGCATTCATCCATATTATCATGTATTTTTATTA
CGGGATGGCTGCTTTCGGTCCTTCGCTTCAAAAATACCTCTGGTGGAAGA
GATACCTTACACAAATGCAACTGGTAGGTTACTATAGTATCTCTACGTAG
GTTAGCCCTTGGTCTGCCTGCTTTGATTAAGATTATCAGTTTTGAGTAGT
CCAGTACTCGTTGCGATTCTATTCATATCTGGAATGGTGATATTAAAAAA
GTCAATTTCTTGAAGAACTGTGCTAAGGATCGTGAATAAGAGAATTTCTT
TTTCATTTCCAGATTCAATTTTGTATAGCATTGGGAACGGCAACGTATTC
TTTGTACAGTGGCTGTGATTTCCCACGTTGGATGAGCTGGGCGTTGATCC
TCTATATGATCTCTTTTCTCGTTTTGTTCGGTAACTTTTACATTCAAGCA
TACTTAACAAAAAAGAAAAAGAAAAATGACGAACTCAGAAATGGCAAAAT
GAAGACTTCTGTTAAAGGAACGAGTAGAGACAATAATGGGGAATTAAGAT
CTAGGAACAAAATCTCATCCTAATTTATAATTATATTTACAGTTCGAGTT
ATAGAGTAAGGTTTATAAGGCATTGATAACTGAAGGGACGGGAAAACTTT
TTCG

Coding sequence (CDS) from alignment at sc0000803:66221..68874-

>TCONS_00030252 ID=TCONS_00030252|Name=TCONS_00030252|organism=Clytia hemisphaerica|type=CDS|length=6153bp|location=Sequence derived from alignment at sc0000803:66221..68874- (Clytia hemisphaerica)
ATTCAATTTTGTATAGCATTGGGAACGGCAACGTATTCTTTGTACAGTGG
CTGTGATTTCCCACGTTGGATGAGCTGGGCGTTGATCCTCTATATGATCT
CTTTTCTCGTTTTGTTCGGTAACTTTTACATTCAAGCATACTTAACAAAA
AAGAAAAAGAAAAATGACGAACTCAGAAATGGCAAAATGAAGACTTCTGT
TAAAGGAACGAGTAGAGACAATAATGGGGAATTAAGATCTAGGAACAAAA
TCTCATCCTAACTGCACCCGCTGCCATCATGAACGCATTCATCCATATTA
TCATGTATTTTTATTACGGGATGGCTGCTTTCGGTCCTTCGCTTCAAAAA
TACCTCTGGTGGAAGAGATACCTTACACAAATGCAACTGTTGTTTTTCAT
CTTGCGCAAGAAGGATAATCAGATTTCATTTTTGCACGTTTATCATCATG
CCACTATGCCCATGTTGTGGTGGATTGGCACCAAATGGGTTCCTGCTGGA
CAGTATTGCCAGAGCTCTGTGGTGGTACTTTGCATCGAAGTTGATCGAAT
TTATTGACACTCTCTTATTTGGAATGCTGGAAGCTGGTTATTCATACCCA
TGTCAACCCTTCCTAACTTCTACAAGACCTGTCGATTTCAGGATCCAAGA
GTTGCAGATTGGTTTCTTATACCCAGTCCTCTCCCAACTTATTCGATGTC
TTTTTTCTACATAATATTTTCATGGAAAATTGGTCCATATCTTATGCACA
ACAGAGAACCCTTCAATTTGAAATATTTGCTGATCATTTATAATTTATCA
ATGGTTTACTTGAATTACCATATTTTCAAGGAGATGGAAGCAATATCAGA
ATTCTACAAATGGGCTGAATCGATCAGTGATTCAATTTTGTATAGCATTG
GGAACGGCAACGTATTCTTTGTACAGTGGCTGTGATTTCCCACGTTGGAT
GAGCTGGGCGTTGATCCTCTATATGATCTCTTTTCTCGTTTTGTTCGGTA
ACTTTTACATTCAAGCATACTTAACAAAAAAGAAAAAGAAAAATGACGAA
CTCAGAAATGGCAAAATGAAGACTTCTGTTAAAGGAACGAGTAGAGACAA
TAATGGGGAATTAAGATCTAGGAACAAAATCTCATCCTAACTGCACCCGC
TGCCATCATGAACGCATTCATCCATATTATCATGTATTTTTATTACGGGA
TGGCTGCTTTCGGTCCTTCGCTTCAAAAATACCTCTGGTGGAAGAGATAC
CTTACACAAATGCAACTGTTGTTTTTCATCTTGCGCAAGAAGGATAATCA
GATTTCATTTTTGCACGTTTATCATCATGCCACTATGCCCATGTTGTGGT
GGATTGGCACCAAATGGGTTCCTGCTGGACAGTATTGCCAGAGCTCTGTG
GTGGTACTTTGCATCGAAGTTGATCGAATTTATTGACACTCTCTTATTTG
GAATGCTGGAAGCTGGTTATTCATACCCATGTCAACCCTTCCTAACTTCT
ACAAGACCTGTCGATTTCAGGATCCAAGAGTTGCAGATTGGTTTCTTATA
CCCAGTCCTCTCCCAACTTATTCGATGTCTTTTTTCTACATAATATTTTC
ATGGAAAATTGGTCCATATCTTATGCACAACAGAGAACCCTTCAATTTGA
AATATTTGCTGATCATTTATAATTTATCAATGGTTTACTTGAATTACCAT
ATTTTCAAGGAGATGGAAGCAATATCAGAATTCTACAAATGGGCTGAATC
GATCAGTGATTCAATTTTGTATAGCATTGGGAACGGCAACGTATTCTTTG
TACAGTGGCTGTGATTTCCCACGTTGGATGAGCTGGGCGTTGATCCTCTA
TATGATCTCTTTTCTCGTTTTGTTCGGTAACTTTTACATTCAAGCATACT
TAACAAAAAAGAAAAAGAAAAATGACGAACTCAGAAATGGCAAAATGAAG
ACTTCTGTTAAAGGAACGAGTAGAGACAATAATGGGGAATTAAGATCTAG
GAACAAAATCTCATCCTAACTGCACCCGCTGCCATCATGAACGCATTCAT
CCATATTATCATGTATTTTTATTACGGGATGGCTGCTTTCGGTCCTTCGC
TTCAAAAATACCTCTGGTGGAAGAGATACCTTACACAAATGCAACTGTTG
TTTTTCATCTTGCGCAAGAAGGATAATCAGATTTCATTTTTGCACGTTTA
TCATCATGCCACTATGCCCATGTTGTGGTGGATTGGCACCAAATGGGTTC
CTGCTGGACAGTATTGCCAGAGCTCTGTGGTGGTACTTTGCATCGAAGTT
GATCGAATTTATTGACACTCTCTTATTTGGAATGCTGGAAGCTGGTTATT
CATACCCATGTCAACCCTTCCTAACTTCTACAAGACCTGTCGATTTCAGG
ATCCAAGAGTTGCAGATTGGTTTCTTATACCCAGTCCTCTCCCAACTTAT
TCGATGTCTTTTTTCTACATAATATTTTCATGGAAAATTGGTCCATATCT
TATGCACAACAGAGAACCCTTCAATTTGAAATATTTGCTGATCATTTATA
ATTTATCAATGGTTTACTTGAATTACCATATTTTCAAGGAGATGGAAGCA
ATATCAGAATTCTACAAATGGGCTGAATCGATCAGTGATTCAATTTTGTA
TAGCATTGGGAACGGCAACGTATTCTTTGTACAGTGGCTGTGATTTCCCA
CGTTGGATGAGCTGGGCGTTGATCCTCTATATGATCTCTTTTCTCGTTTT
GTTCGGTAACTTTTACATTCAAGCATACTTAACAAAAAAGAAAAAGAAAA
ATGACGAACTCAGAAATGGCAAAATGAAGACTTCTGTTAAAGGAACGAGT
AGAGACAATAATGGGGAATTAAGATCTAGGAACAAAATCTCATCCTAACT
GCACCCGCTGCCATCATGAACGCATTCATCCATATTATCATGTATTTTTA
TTACGGGATGGCTGCTTTCGGTCCTTCGCTTCAAAAATACCTCTGGTGGA
AGAGATACCTTACACAAATGCAACTGTTGTTTTTCATCTTGCGCAAGAAG
GATAATCAGATTTCATTTTTGCACGTTTATCATCATGCCACTATGCCCAT
GTTGTGGTGGATTGGCACCAAATGGGTTCCTGCTGGACAGTATTGCCAGA
GCTCTGTGGTGGTACTTTGCATCGAAGTTGATCGAATTTATTGACACTCT
CTTATTTGGAATGCTGGAAGCTGGTTATTCATACCCATGTCAACCCTTCC
TAACTTCTACAAGACCTGTCGATTTCAGGATCCAAGAGTTGCAGATTGGT
TTCTTATACCCAGTCCTCTCCCAACTTATTCGATGTCTTTTTTCTACATA
ATATTTTCATGGAAAATTGGTCCATATCTTATGCACAACAGAGAACCCTT
CAATTTGAAATATTTGCTGATCATTTATAATTTATCAATGGTTTACTTGA
ATTACCATATTTTCAAGGAGATGGAAGCAATATCAGAATTCTACAAATGG
GCTGAATCGATCAGTGATTCAATTTTGTATAGCATTGGGAACGGCAACGT
ATTCTTTGTACAGTGGCTGTGATTTCCCACGTTGGATGAGCTGGGCGTTG
ATCCTCTATATGATCTCTTTTCTCGTTTTGTTCGGTAACTTTTACATTCA
AGCATACTTAACAAAAAAGAAAAAGAAAAATGACGAACTCAGAAATGGCA
AAATGAAGACTTCTGTTAAAGGAACGAGTAGAGACAATAATGGGGAATTA
AGATCTAGGAACAAAATCTCATCCTAACTGCACCCGCTGCCATCATGAAC
GCATTCATCCATATTATCATGTATTTTTATTACGGGATGGCTGCTTTCGG
TCCTTCGCTTCAAAAATACCTCTGGTGGAAGAGATACCTTACACAAATGC
AACTGTTGTTTTTCATCTTGCGCAAGAAGGATAATCAGATTTCATTTTTG
CACGTTTATCATCATGCCACTATGCCCATGTTGTGGTGGATTGGCACCAA
ATGGGTTCCTGCTGGACAGTATTGCCAGAGCTCTGTGGTGGTACTTTGCA
TCGAAGTTGATCGAATTTATTGACACTCTCTTATTTGGAATGCTGGAAGC
TGGTTATTCATACCCATGTCAACCCTTCCTAACTTCTACAAGACCTGTCG
ATTTCAGGATCCAAGAGTTGCAGATTGGTTTCTTATACCCAGTCCTCTCC
CAACTTATTCGATGTCTTTTTTCTACATAATATTTTCATGGAAAATTGGT
CCATATCTTATGCACAACAGAGAACCCTTCAATTTGAAATATTTGCTGAT
CATTTATAATTTATCAATGGTTTACTTGAATTACCATATTTTCAAGGAGA
TGGAAGCAATATCAGAATTCTACAAATGGGCTGAATCGATCAGTGATTCA
ATTTTGTATAGCATTGGGAACGGCAACGTATTCTTTGTACAGTGGCTGTG
ATTTCCCACGTTGGATGAGCTGGGCGTTGATCCTCTATATGATCTCTTTT
CTCGTTTTGTTCGGTAACTTTTACATTCAAGCATACTTAACAAAAAAGAA
AAAGAAAAATGACGAACTCAGAAATGGCAAAATGAAGACTTCTGTTAAAG
GAACGAGTAGAGACAATAATGGGGAATTAAGATCTAGGAACAAAATCTCA
TCCTAACTGCACCCGCTGCCATCATGAACGCATTCATCCATATTATCATG
TATTTTTATTACGGGATGGCTGCTTTCGGTCCTTCGCTTCAAAAATACCT
CTGGTGGAAGAGATACCTTACACAAATGCAACTGTTGTTTTTCATCTTGC
GCAAGAAGGATAATCAGATTTCATTTTTGCACGTTTATCATCATGCCACT
ATGCCCATGTTGTGGTGGATTGGCACCAAATGGGTTCCTGCTGGACAGTA
TTGCCAGAGCTCTGTGGTGGTACTTTGCATCGAAGTTGATCGAATTTATT
GACACTCTCTTATTTGGAATGCTGGAAGCTGGTTATTCATACCCATGTCA
ACCCTTCCTAACTTCTACAAGACCTGTCGATTTCAGGATCCAAGAGTTGC
AGATTGGTTTCTTATACCCAGTCCTCTCCCAACTTATTCGATGTCTTTTT
TCTACATAATATTTTCATGGAAAATTGGTCCATATCTTATGCACAACAGA
GAACCCTTCAATTTGAAATATTTGCTGATCATTTATAATTTATCAATGGT
TTACTTGAATTACCATATTTTCAAGGAGATGGAAGCAATATCAGAATTCT
ACAAATGGGCTGAATCGATCAGTGATTCAATTTTGTATAGCATTGGGAAC
GGCAACGTATTCTTTGTACAGTGGCTGTGATTTCCCACGTTGGATGAGCT
GGGCGTTGATCCTCTATATGATCTCTTTTCTCGTTTTGTTCGGTAACTTT
TACATTCAAGCATACTTAACAAAAAAGAAAAAGAAAAATGACGAACTCAG
AAATGGCAAAATGAAGACTTCTGTTAAAGGAACGAGTAGAGACAATAATG
GGGAATTAAGATCTAGGAACAAAATCTCATCCTAACTGCACCCGCTGCCA
TCATGAACGCATTCATCCATATTATCATGTATTTTTATTACGGGATGGCT
GCTTTCGGTCCTTCGCTTCAAAAATACCTCTGGTGGAAGAGATACCTTAC
ACAAATGCAACTGTTGTTTTTCATCTTGCGCAAGAAGGATAATCAGATTT
CATTTTTGCACGTTTATCATCATGCCACTATGCCCATGTTGTGGTGGATT
GGCACCAAATGGGTTCCTGCTGGACAGTATTGCCAGAGCTCTGTGGTGGT
ACTTTGCATCGAAGTTGATCGAATTTATTGACACTCTCTTATTTGGAATG
CTGGAAGCTGGTTATTCATACCCATGTCAACCCTTCCTAACTTCTACAAG
ACCTGTCGATTTCAGGATCCAAGAGTTGCAGATTGGTTTCTTATACCCAG
TCCTCTCCCAACTTATTCGATGTCTTTTTTCTACATAATATTTTCATGGA
AAATTGGTCCATATCTTATGCACAACAGAGAACCCTTCAATTTGAAATAT
TTGCTGATCATTTATAATTTATCAATGGTTTACTTGAATTACCATATTTT
CAAGGAGATGGAAGCAATATCAGAATTCTACAAATGGGCTGAATCGATCA
GTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017316XLOC_017316Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030252-proteinTCONS_00030252-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030252-exon-sc0000803-1575043694:68703..68874TCONS_00030252-exon-sc0000803-1575043694:68703..68874Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1575043694:68192..68382TCONS_00030252-exon-sc0000803-1575043694:68192..68382Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1575043694:67877..67957TCONS_00030252-exon-sc0000803-1575043694:67877..67957Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1575043694:67448..67504TCONS_00030252-exon-sc0000803-1575043694:67448..67504Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1575043694:67109..67223TCONS_00030252-exon-sc0000803-1575043694:67109..67223Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1575043694:66752..66879TCONS_00030252-exon-sc0000803-1575043694:66752..66879Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1575043694:66221..66562TCONS_00030252-exon-sc0000803-1575043694:66221..66562Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1510915933:68703..68874TCONS_00030252-exon-sc0000803-1510915933:68703..68874Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1510915933:68192..68382TCONS_00030252-exon-sc0000803-1510915933:68192..68382Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1510915933:67877..67957TCONS_00030252-exon-sc0000803-1510915933:67877..67957Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1510915933:67448..67504TCONS_00030252-exon-sc0000803-1510915933:67448..67504Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1510915933:67109..67223TCONS_00030252-exon-sc0000803-1510915933:67109..67223Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1510915933:66752..66879TCONS_00030252-exon-sc0000803-1510915933:66752..66879Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1510915933:66221..66562TCONS_00030252-exon-sc0000803-1510915933:66221..66562Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1491911889:68703..68874TCONS_00030252-exon-sc0000803-1491911889:68703..68874Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1491911889:68192..68382TCONS_00030252-exon-sc0000803-1491911889:68192..68382Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1491911889:67877..67957TCONS_00030252-exon-sc0000803-1491911889:67877..67957Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1491911889:67448..67504TCONS_00030252-exon-sc0000803-1491911889:67448..67504Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1491911889:67109..67223TCONS_00030252-exon-sc0000803-1491911889:67109..67223Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1491911889:66752..66879TCONS_00030252-exon-sc0000803-1491911889:66752..66879Clytia hemisphaericaexon
TCONS_00030252-exon-sc0000803-1491911889:66221..66562TCONS_00030252-exon-sc0000803-1491911889:66221..66562Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000803supercontigsc0000803:66221..68874 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.53264	4.75122	4.31436	1.5228	0.0157568	0.0130728	0.0995448	0.0588431	0.838994	0	0.00269747	0.17768	0.0449347	0	0.423841	1.71998	1.30424	0	0.722458	0.0253078	0.567683	0.0810183	5.34812	7.72807	0.00920979	0	1.57803	3.04553	13.6428	11.3023
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002076ELO_fam
IPR030457ELO_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00030252 vs. Swiss-Prot (Human)
Match: ELOV4 (Elongation of very long chain fatty acids protein 4 OS=Homo sapiens GN=ELOVL4 PE=1 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 5.209e-103
Identity = 157/285 (55.09%), Postives = 195/285 (68.42%), Query Frame = 1 
Query:  142 EFYKWAESISDPRVADWFLIPSPLPTYSMSFFYIIFSWKIGPYLMHNREPFNLKYLLIIYNLSMVYLNYHIFKELLFGMLEAGYSYPCQPFLTSTRPVDFRIARALWWYFASKLIEFIDTLFFILRKKDNQISFLHVYHHATMPMLWWIGTKWVPAGQSAPAAIMNAFIHIIMYFYYGMAAFGPSLQKYLWWKRYLTQMQLIQFCIALGTATYSLYSGCDFPRWMSWALILYMISFLVLFGNFYIQAYLTKKKKKNDELRNGKMKTSVKGTSRDNNGELRSRNKI 996
            EFY+W  SI+D RV +W L+ SP PT S+S  Y++F W +GP  M +REPF ++ +LIIYN  MV LN  IF+EL  G   AGYSY CQ    S    + RIA ALWWYF SK +E++DT+FFILRKK+NQ+SFLHVYHH TM  LWWIG KWV  GQ+   A +N+FIH+IMY YYG+ AFGP +QKYLWWKRYLT +QLIQF + +G    SLY+ C FP+WM WALI Y ISF+ LF NFYI+ Y   KK K         KT++ G S   NG  +S  ++
Sbjct:   24 EFYRWTWSIADKRVENWPLMQSPWPTLSISTLYLLFVW-LGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLYTDCPFPKWMHWALIAYAISFIFLFLNFYIRTYKEPKKPKAG-------KTAMNGISA--NGVSKSEKQL 298
The following BLAST results are available for this feature:
BLAST of TCONS_00030252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELOV45.209e-10355.09Elongation of very long chain fatty acids protein ... [more]
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