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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030229 ID=TCONS_00030229|Name=TCONS_00030229|organism=Clytia hemisphaerica|type=transcript|length=1021bp TGTGCAGACTAAAAGAGAAGATCGATGGACTAACTTGGCAAGTGTTCCAC ATATAAACGCCACAAGGAGTGGATTTCTTCTGAAATCACCTGAGAAAGTA TCACACGCAAAAACAATCAATGAGGACAACGAGCAACAACAACGTTTATC TCATCTCAAAGATTTCTGCCAACGACGACagaaaaatcataacaacaaaa ccttaaaatttggaGATAGCTTCATATacaatgataaaaagaaatttgta tATTGCCGTATACCAAAAGTAGCATGTACAACATGGAAGAAGGTTGTTTT GTATACGTTGGGTATTGTCGACACTCATCCGGTCAATACCTCTCTCAATA CTCTTTATAGCTACCGTATGCCGTACATGAAGGACTTCAAAAACGATACC CAACGAATCAAATACATGCAAGACAATTATTTCTCATTCATGCTCTCTCG TCATCCATTTGATCGTCTCTTCTCAGTCNATTATTTCTCATTCATATTCT CCCGTCATCCATTTGATCGACTCTACTCAGTTTACAGAAACAAATTTCAG AATCCAGTGGTCAAAAGAGCAAGTTTCCTGCATTATTTTGGTCCAATCAT TCTTAAAGTAACAGGAAAAAATCTAAACACTCACTCGAAGAAAATAAGGC ATGGAATCGAATATTATGATatcacttttgaagaatttttaacgttttta acaATGGGTGGTTATGACGCAGATGACCATTGGACGCCACAGACTTCATT GTGCCAAATATGTAAATACGAATTCGATTTCATTGGTAGATTTGAACATT TGAGTTTAGATTCGAataagattttcaaactaaTTCAAACTGatataaat ttttcaatttcacatgactataaacaaaaaacaaccgATGTTTTAAAAGA TGTCTATTCAAAAATACCGAGAACTTTGTTGTTGAAAGTTTATCAAGTtt ataaatatgattttgatgcttTTGGATATCATCCCAAtgaatattttcac tttttgtaaaagatatACGAG Run BLAST on NCBI protein sequence of TCONS_00030229-protein >TCONS_00030229-protein ID=TCONS_00030229-protein|Name=TCONS_00030229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
VQTKREDRWTNLASVPHINATRSGFLLKSPEKVSHAKTINEDNEQQQRLS HLKDFCQRRQKNHNNKTLKFGDSFIYNDKKKFVYCRIPKVACTTWKKVVL YTLGIVDTHPVNTSLNTLYSYRMPYMKDFKNDTQRIKYMQDNYFSFMLSR HPFDRLFSVXYFSFIFSRHPFDRLYSVYRNKFQNPVVKRASFLHYFGPII LKVTGKNLNTHSKKIRHGIEYYDITFEEFLTFLTMGGYDADDHWTPQTSL CQICKYEFDFIGRFEHLSLDSNKIFKLIQTDINFSISHDYKQKTTDVLKD VYSKIPRTLLLKVYQVYKYDFDAFGYHPNEYFHFL Run BLAST on NCBI transcript from alignment at sc0000802:57694..60711+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030229 ID=TCONS_00030229|Name=TCONS_00030229|organism=Clytia hemisphaerica|type=transcript|length=3018bp|location=Sequence derived from alignment at sc0000802:57694..60711+ (Clytia hemisphaerica) TGTGCAGACTAAAAGAGAAGGTATCATTAAATCTGCGGTCCTACACAAGA
GCACTCCCCCTCATCGGTGAAGGTGTGATTGGATCCCGGGGGATCCGATA
AAACGATCATACGTCCGGCCCAGATTTAGGGTAAAATTAGCGTAATGAGA
CCATTTTTTTCGACTTGAAGACGTGATTAGAACTTTTTTAATGCGTGATG
GTATGATCAAAGACTCCATTGGTCAAACATCGCATACTTTAACAATGTAG
ATTTTTAATATTAGACTTAACACTTGACTAAACGACCTTGTGATCAAAGG
AATCATATGCTCCATTAAGATAAGAATATAGTTTGACAACTAAACCCCTT
CAAAATTGAAGAGGTTTTAGATTTATTCGTCTGAAGTATCcacaaaacac
ccctgtctcacagccccggtggaacttttttcccacaatggggataaaaa
tttctatcgaaatcccaatgcaattgggatagaaattctattgttcccaa
GCTTAAAATATCCATTTGGGATGGTTTTTGACagcaaatttttgcattga
atttcgaatggggatgaaatcaaagtcaattaaCCGgaggggctgaaatt
gtagggtattttgtcCACCGTGGACGACATTTTTGTCAATATCTCaatgg
ggctggggtcccaccgggtctgtgacacaggggtgtcacaAATAAGTAAA
ATAATTTCGGAAAAAGTCCTTCTTTTTCTAATTTCAGATCGATGGACTAA
CTTGGCAAGTGTTGTGAGTATAATGTTTGTGATTAACCTGATGTAATGTA
TTAGATGTTTGTTACAAAATAATTGACAAGCAAacattttgatacaaaaa
aattcaattaaattcaagaataaaaaaagtaaatgtcaaattagagagcg
tctcAACTGAATTTTAACTGTAACTGTATTTGAAATAGCCATAACGGCTG
AAAATAATGAACGAATCGTCCCTTGCGATACACCATTTTGACCGTAATCA
CACGGTCagacgcgtgccactttattatttaaataACCCCCCTCTAAACT
CGACCCAacccttttttacaccttttctattgtttataggtgcgaaaaaa
gactgggatgtTTTAAGGGTGgtaaaaaggacaaaaaatgccccgcggca
attggcggctacggtcgaaaagatgtattGGCTGAATCTTTTGATTAAGG
TTATTATTCTAATTTTTAGCCACATATAAACGCCACAAGGAGTGGATTTC
TTCTGAAATCACCTGAGAAAGTATCACACGCAAAAACAATCAATGAGGAC
AACGAGCAACAACAACGTTTATCTCATCTCAAAGATTTCTGCCAACGACG
ACagaaaaatcataacaacaaaaccttaaaatttggaGATAGCTTCATAT
acaatgataaaaagaaatttgtatATTGCCGTATACCAAAAGTAGCATGT
ACAACATGGAAGAAGGTTGTTTTGTATACGTTGGGTATTGTCGACACTCA
TCCGGTCAATACCTCTCTCAATACTGTGAGTATTACCATAGTATGTCCGA
AAGAAAGCTGGTCTGAATACtcaaaggcttggggacacgagaaatttttt
gtgtgcaatgtgcaatgcaacatgctttatcccaccaacacaagaaaaaa
gtgtatgtcccattgtttttttttttatttcacggGTGACGAAAAGttag
ggaaatacccaaaagacacgctcaTTTTGTcgtccctgggacaaaagtcA
GATTTCATTTGGGGTGGAGaaacgagaaagcgtttcagttTGTTGAGATG
GAACATGTTGGATTTAAATCCTTGAAAACCAGTAGGGACTCTCAAAACTT
TAGCTCACTTTAGCATTGTCAAAATGTGACGTGAGCAGAGTTTTCAAAAT
AAGGATAACATTTCGAAGCTTTGTAATTTTTACCATATAATCGAGTGCAT
GATACAGGGGtatgtttgaaattattacAAAGCAATGATAACTTTTTGtt
tataacacccctgtgtcacagccccggtggaacttttttccttggtttgg
ataaaaattcttattgaaaGCCCAACgaagatagaaattctattgttcaa
aggttaaaaaatctagtgtggatggttttggagtgcagtttttaaacatt
gaacTTCGAATGGGGATATCAGAGTCAATCTCCAGTGGGGctaaattcca
gggtattttcctaccggggacgaaatttttgccaaatcttCCAGTAGGGc
ttgggtcccagcgggtctatgacacCCCTGGTGTTTTACACGTCTCAAGG
GGGGGGGTTCTATTTATGGTTACATCTCTGTTCAATTTGCTGTTTTCAGC
TTTATAGCTACCGTATGCCGTACATGAAGGACTTCAAAAACGATACCCAA
CGAATCAAATACATGCAAGACAATTATTTCTCATTCATGCTCTCTCGTCA
TCCATTTGATCGTCTCTTCTCAGTCNATTATTTCTCATTCATATTCTCCC
GTCATCCATTTGATCGACTCTACTCAGTTTACAGAAACAAATTTCAGAAT
CCAGTGGTCAAAAGAGCAAGTTTCCTGCATTATTTTGGTCCAATCATTCT
TAAAGTAACAGGAAAAAATCTAAACACTCACTCGAAGAAAATAAGGCATG
GAATCGAATATTATGATatcacttttgaagaatttttaacgtttttaaca
ATGGGTGGTTATGACGCAGATGACCATTGGACGCCACAGACTTCATTGTG
CCAAATATGTAAATACGAATTCGATTTCATTGGTAGATTTGAACATTTGA
GTTTAGATTCGAataagattttcaaactaaTTCAAACTGatataaatttt
tcaatttcacatgactataaacaaaaaacaaccgATGTTTTAAAAGATGT
CTATTCAAAAATACCGAGAACTTTGTTGTTGAAAGTTTATCAAGTttata
aatatgattttgatgcttTTGGATATCATCCCAAtgaatattttcacttt
ttgtaaaagatatACGAG Coding sequence (CDS) from alignment at sc0000802:57694..60711+ >TCONS_00030229 ID=TCONS_00030229|Name=TCONS_00030229|organism=Clytia hemisphaerica|type=CDS|length=4032bp|location=Sequence derived from alignment at sc0000802:57694..60711+ (Clytia hemisphaerica) GTGCAGACTAAAAGAGAAGATCGATGGACTAACTTGGCAAGTGTTCCACA TATAAACGCCACAAGGAGTGGATTTCTTCTGAAATCACCTGAGAAAGTAT CACACGCAAAAACAATCAATGAGGACAACGAGCAACAACAACGTTTATCT CATCTCAAAGATTTCTGCCAACGACGACagaaaaatcataacaacaaaac cttaaaatttggaGATAGCTTCATATacaatgataaaaagaaatttgtat ATTGCCGTATACCAAAAGTAGCATGTACAACATGGAAGAAGGTTGTTTTG TATACGTTGGGTATTGTCGACACTCATCCGGTCAATACCTCTCTCAATAC TCTTTATAGCTACCGTATGCCGTACATGAAGGACTTCAAAAACGATACCC AACGAATCAAATACATGCAAGACAATTATTTCTCATTCATGCTCTCTCGT CATCCATTTGATCGTCTCTTCTCAGTCNATTATTTCTCATTCATATTCTC CCGTCATCCATTTGATCGACTCTACTCAGTTTACAGAAACAAATTTCAGA ATCCAGTGGTCAAAAGAGCAAGTTTCCTGCATTATTTTGGTCCAATCATT CTTAAAGTAACAGGAAAAAATCTAAACACTCACTCGAAGAAAATAAGGCA TGGAATCGAATATTATGATatcacttttgaagaatttttaacgtttttaa caATGGGTGGTTATGACGCAGATGACCATTGGACGCCACAGACTTCATTG TGCCAAATATGTAAATACGAATTCGATTTCATTGGTAGATTTGAACATTT GAGTTTAGATTCGAataagattttcaaactaaTTCAAACTGatataaatt tttcaatttcacatgactataaacaaaaaacaaccgATGTTTTAAAAGAT GTCTATTCAAAAATACCGAGAACTTTGTTGTTGAAAGTTTATCAAGTtta taaatatgattttgatgcttTTGGATATCATCCCAAtgaatattttcact ttttgtaaGTGCAGACTAAAAGAGAAGATCGATGGACTAACTTGGCAAGT GTTCCACATATAAACGCCACAAGGAGTGGATTTCTTCTGAAATCACCTGA GAAAGTATCACACGCAAAAACAATCAATGAGGACAACGAGCAACAACAAC GTTTATCTCATCTCAAAGATTTCTGCCAACGACGACagaaaaatcataac aacaaaaccttaaaatttggaGATAGCTTCATATacaatgataaaaagaa atttgtatATTGCCGTATACCAAAAGTAGCATGTACAACATGGAAGAAGG TTGTTTTGTATACGTTGGGTATTGTCGACACTCATCCGGTCAATACCTCT CTCAATACTCTTTATAGCTACCGTATGCCGTACATGAAGGACTTCAAAAA CGATACCCAACGAATCAAATACATGCAAGACAATTATTTCTCATTCATGC TCTCTCGTCATCCATTTGATCGTCTCTTCTCAGTCNATTATTTCTCATTC ATATTCTCCCGTCATCCATTTGATCGACTCTACTCAGTTTACAGAAACAA ATTTCAGAATCCAGTGGTCAAAAGAGCAAGTTTCCTGCATTATTTTGGTC CAATCATTCTTAAAGTAACAGGAAAAAATCTAAACACTCACTCGAAGAAA ATAAGGCATGGAATCGAATATTATGATatcacttttgaagaatttttaac gtttttaacaATGGGTGGTTATGACGCAGATGACCATTGGACGCCACAGA CTTCATTGTGCCAAATATGTAAATACGAATTCGATTTCATTGGTAGATTT GAACATTTGAGTTTAGATTCGAataagattttcaaactaaTTCAAACTGa tataaatttttcaatttcacatgactataaacaaaaaacaaccgATGTTT TAAAAGATGTCTATTCAAAAATACCGAGAACTTTGTTGTTGAAAGTTTAT CAAGTttataaatatgattttgatgcttTTGGATATCATCCCAAtgaata ttttcactttttgtaaGTGCAGACTAAAAGAGAAGATCGATGGACTAACT TGGCAAGTGTTCCACATATAAACGCCACAAGGAGTGGATTTCTTCTGAAA TCACCTGAGAAAGTATCACACGCAAAAACAATCAATGAGGACAACGAGCA ACAACAACGTTTATCTCATCTCAAAGATTTCTGCCAACGACGACagaaaa atcataacaacaaaaccttaaaatttggaGATAGCTTCATATacaatgat aaaaagaaatttgtatATTGCCGTATACCAAAAGTAGCATGTACAACATG GAAGAAGGTTGTTTTGTATACGTTGGGTATTGTCGACACTCATCCGGTCA ATACCTCTCTCAATACTCTTTATAGCTACCGTATGCCGTACATGAAGGAC TTCAAAAACGATACCCAACGAATCAAATACATGCAAGACAATTATTTCTC ATTCATGCTCTCTCGTCATCCATTTGATCGTCTCTTCTCAGTCNATTATT TCTCATTCATATTCTCCCGTCATCCATTTGATCGACTCTACTCAGTTTAC AGAAACAAATTTCAGAATCCAGTGGTCAAAAGAGCAAGTTTCCTGCATTA TTTTGGTCCAATCATTCTTAAAGTAACAGGAAAAAATCTAAACACTCACT CGAAGAAAATAAGGCATGGAATCGAATATTATGATatcacttttgaagaa tttttaacgtttttaacaATGGGTGGTTATGACGCAGATGACCATTGGAC GCCACAGACTTCATTGTGCCAAATATGTAAATACGAATTCGATTTCATTG GTAGATTTGAACATTTGAGTTTAGATTCGAataagattttcaaactaaTT CAAACTGatataaatttttcaatttcacatgactataaacaaaaaacaac cgATGTTTTAAAAGATGTCTATTCAAAAATACCGAGAACTTTGTTGTTGA AAGTTTATCAAGTttataaatatgattttgatgcttTTGGATATCATCCC AAtgaatattttcactttttgtaaGTGCAGACTAAAAGAGAAGATCGATG GACTAACTTGGCAAGTGTTCCACATATAAACGCCACAAGGAGTGGATTTC TTCTGAAATCACCTGAGAAAGTATCACACGCAAAAACAATCAATGAGGAC AACGAGCAACAACAACGTTTATCTCATCTCAAAGATTTCTGCCAACGACG ACagaaaaatcataacaacaaaaccttaaaatttggaGATAGCTTCATAT acaatgataaaaagaaatttgtatATTGCCGTATACCAAAAGTAGCATGT ACAACATGGAAGAAGGTTGTTTTGTATACGTTGGGTATTGTCGACACTCA TCCGGTCAATACCTCTCTCAATACTCTTTATAGCTACCGTATGCCGTACA TGAAGGACTTCAAAAACGATACCCAACGAATCAAATACATGCAAGACAAT TATTTCTCATTCATGCTCTCTCGTCATCCATTTGATCGTCTCTTCTCAGT CNATTATTTCTCATTCATATTCTCCCGTCATCCATTTGATCGACTCTACT CAGTTTACAGAAACAAATTTCAGAATCCAGTGGTCAAAAGAGCAAGTTTC CTGCATTATTTTGGTCCAATCATTCTTAAAGTAACAGGAAAAAATCTAAA CACTCACTCGAAGAAAATAAGGCATGGAATCGAATATTATGATatcactt ttgaagaatttttaacgtttttaacaATGGGTGGTTATGACGCAGATGAC CATTGGACGCCACAGACTTCATTGTGCCAAATATGTAAATACGAATTCGA TTTCATTGGTAGATTTGAACATTTGAGTTTAGATTCGAataagattttca aactaaTTCAAACTGatataaatttttcaatttcacatgactataaacaa aaaacaaccgATGTTTTAAAAGATGTCTATTCAAAAATACCGAGAACTTT GTTGTTGAAAGTTTATCAAGTttataaatatgattttgatgcttTTGGAT ATCATCCCAAtgaatattttcactttttgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00030229-exon-sc0000802-1491911889:57694..57713 | TCONS_00030229-exon-sc0000802-1491911889:57694..57713 | Clytia hemisphaerica | exon |
| TCONS_00030229-exon-sc0000802-1510915933:57694..57713 | TCONS_00030229-exon-sc0000802-1510915933:57694..57713 | Clytia hemisphaerica | exon |
| TCONS_00030229-exon-sc0000802-1575043694:57694..57713 | TCONS_00030229-exon-sc0000802-1575043694:57694..57713 | Clytia hemisphaerica | exon |
| TCONS_00030229-exon-sc0000802-1491911889:58431..58456 | TCONS_00030229-exon-sc0000802-1491911889:58431..58456 | Clytia hemisphaerica | exon |
| TCONS_00030229-exon-sc0000802-1510915933:58431..58456 | TCONS_00030229-exon-sc0000802-1510915933:58431..58456 | Clytia hemisphaerica | exon |
| TCONS_00030229-exon-sc0000802-1575043694:58431..58456 | TCONS_00030229-exon-sc0000802-1575043694:58431..58456 | Clytia hemisphaerica | exon |
| TCONS_00030229-exon-sc0000802-1491911889:58913..59218 | TCONS_00030229-exon-sc0000802-1491911889:58913..59218 | Clytia hemisphaerica | exon |
| TCONS_00030229-exon-sc0000802-1510915933:58913..59218 | TCONS_00030229-exon-sc0000802-1510915933:58913..59218 | Clytia hemisphaerica | exon |
| TCONS_00030229-exon-sc0000802-1575043694:58913..59218 | TCONS_00030229-exon-sc0000802-1575043694:58913..59218 | Clytia hemisphaerica | exon |
| TCONS_00030229-exon-sc0000802-1491911889:60043..60711 | TCONS_00030229-exon-sc0000802-1491911889:60043..60711 | Clytia hemisphaerica | exon |
| TCONS_00030229-exon-sc0000802-1510915933:60043..60711 | TCONS_00030229-exon-sc0000802-1510915933:60043..60711 | Clytia hemisphaerica | exon |
| TCONS_00030229-exon-sc0000802-1575043694:60043..60711 | TCONS_00030229-exon-sc0000802-1575043694:60043..60711 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000802 | supercontig | sc0000802:57694..60711 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
| IPR005331 | Sulfotransferase |
Vocabulary: Molecular Function
| Term | Definition |
| GO:0008146 | sulfotransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0008146 |
sulfotransferase activity |
Blast
BLAST of TCONS_00030229 vs. Swiss-Prot (Human)
Match: CHSTC (Carbohydrate sulfotransferase 12 OS=Homo sapiens GN=CHST12 PE=2 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 1.539e-26 Identity = 84/315 (26.67%), Postives = 145/315 (46.03%), Query Frame = 2
Query: 110 KTINEDNEQQQRLSHLKDFCQRRQKNHNNKTLKFGD-------SFIYNDKKKFVYCRIPKVACTTWKKVVLYTLGIVDTHPVNTSLNTLYSYRMPYMKDFKNDTQRIKYMQDNYFS---FMLSRHPFDRLFSVX---YFSFIFSRHPFDRLYSVYRNKFQNPVVKRASFLHYFGPIILKVTGKNLN---THSKKIRHGIEYYDITFEEFLTFL----TMGGYDADDHWTPQTSLCQICKYEFDFIGRFEHLSLDSNKIFKLIQTDINFSISHDYKQKTTDVL-KDVYSKIPRTLLLKVYQVYKYDFDAFGYHPNE 991
++ ++ +Q +R S L+ FC K F D I +D+ +YC +PKVACT WK+V++ G + L+ YR P ++ ++ N F LSRH L V Y F+F R PF RL S +R+KF+ ++ F F +L++ + + + + R G++ ++F F+ +L T ++HW LC C+ ++DF+G+ E L D+ ++ +L+Q D Y+ +T +D ++KIP ++Y++Y+ DF FGY E
Sbjct: 113 RSPDQGRQQAERRSVLRGFCANSSLAFPTKERAFDDIPNSELSHLIVDDRHGAIYCYVPKVACTNWKRVMIVLSGSL--------LHRGAPYRDPLRIPREHVHNASAHLTFNKFWRRYGKLSRH----LMKVKLKKYTKFLFVRDPFVRLISAFRSKFE---LENEEFYRKFAVPMLRLYANHTSLPASAREAFRAGLK---VSFANFIQYLLDPHTEKLAPFNEHWRQVYRLCHPCQIDYDFVGKLETLDEDAAQLLQLLQVDRQLRFPPSYRNRTASSWEEDWFAKIPLAWRQQLYKLYEADFVLFGYPKPE 409
The following BLAST results are available for this feature:
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