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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030234 ID=TCONS_00030234|Name=TCONS_00030234|organism=Clytia hemisphaerica|type=transcript|length=560bp
AAAACAAATCACGAGGCCATGAGGTTGTTATCCGTAGCCCTGTTGTTGAC
AATCGTGGTAATGGAGGTCAACGGAGGATGTTGGGAGGCCTGGAGTCGAT
GTACTGGATGGAGTAAGCCAGGAACCGgaTATCTATGGAAAACCTGCCGT
GACCGTTGTCGCATCTGTAGAAATCGACAGGATGGAGCTTGTGTTTCTAC
AACCAAAGCAGAATGTGGTGCTAAAATGATGTGCAGATGTTCCGGTGGTT
ATTATCCTTACAAAAGAAGTCTGTGGGAATCGACAACCTGTAGATTGGGA
TTGTAATACAAAAAAACACTGAGATGACATGACACTGATTATCGAACGAT
CTATCttgttttttaaaacattttatgaGTGTTCGTCTTCGACAATATAT
ATCATTATAAACAATTTTAACAATCTTTTTGCTCTTCttaaatttttatc
tttattttccgTTGGAATTGAGTTTTAggcaaaaaatgcaattttgatTT
GAGCAACAAAAGTTAAAGTTAGAAAAAGTTAGAGGGGGTCCTATTTTcgg
tattttcaaa Run BLAST on NCBI protein sequence of TCONS_00030234-protein >TCONS_00030234-protein ID=TCONS_00030234-protein|Name=TCONS_00030234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
KTNHEAMRLLSVALLLTIVVMEVNGGCWEAWSRCTGWSKPGTGYLWKTCR
DRCRICRNRQDGACVSTTKAECGAKMMCRCSGGYYPYKRSLWESTTCRLG
L Run BLAST on NCBI transcript from alignment at sc0000802:49712..51074- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030234 ID=TCONS_00030234|Name=TCONS_00030234|organism=Clytia hemisphaerica|type=transcript|length=1363bp|location=Sequence derived from alignment at sc0000802:49712..51074- (Clytia hemisphaerica)
AAAACAAATCACGAGGCCATGAGGTTGTTATCCGTAGCCCTGTTGTTGAC
AATCGTGGTAATGGAGGTCAACGGAGGATGTTGGGAGGCCTGGAGTCGAT
GTACTGGATGGAGTAAGCCAGGAACCGGTAGGTGCTACTTTCTGTATTTC
CAAAGTAAAAACTATTCAAGAACATGTTTCGAACAGATAAAGAACATCTT
AAGGCTTTGTAGAACTTCCAATTTCTCAAGAAGATGGACAAAAATGCTCA
CAAAATGATGAAAGGAAGAACATTTTTAGGCTTAAAATTCAAAAATTCAA
GNATGCTCACAAAATGATGAAAAGAAGAACATTTTTAGGCTTAAAATTCA
AAAATTCAAGTATTAAATATTTTTGGATATTTTTATAAAAAAACGTGTAT
AGATGTTAAGCATCTGTATTTGCGACACATCCTCACGTACTTACTTCTAC
TATATGTGTAGATAAGTAAACATACGTACTTTATTGGTACTTTCGGTAAA
TACTATATCTACCATTACAGTATGAATAATACTTCTACGGTATTGGAAGA
ATTTCCAGCTCACTAAAGTAGAGACTTATACGAATGCATGATTTATCGTT
CTTTTAACCGCTAGTCGTACAAAAAGTAATGAATATGTTGGGGTGGTAGT
CACTGACCAAACTTGGGGTTTCGGACGGCGAAAAATGTCGCCTATTAAAG
CATACTTTTAAAACCTCAGTTAATGGGTAGAGAAGCAATGTTGAAACCTG
ATTTAACACATGATCTTACTGTGTACGATATTCAAATTTAAAAAAGTGTC
TTTTCCATATCTTCTTTTTTTCAATTAAATGTAGGATCAAAATCTGTACA
CAGTAACTTGAAAAAGACACGTAAGAGGTCGAAATATCGTTTCAAAAAAT
GTGTTATGTGTTATTTTTCTTTTTTTGAAGGATATCTATGGAAAACCTGC
CGTGACCGTTGTCGCATCTGTAGAAATCGACAGGATGGAGCTTGTGTTTC
TACAACCAAAGCAGAATGTGGTGCTAAAATGATGTGCAGATGTTCCGGTG
GTTATTATCCTTACAAAAGAAGTCTGTGGGAATCGACAACCTGTAGATTG
GGATTGTAATACAAAAAAACACTGAGATGACATGACACTGATTATCGAAC
GATCTATCTTGTTTTTTAAAACATTTTATGAGTGTTCGTCTTCGACAATA
TATATCATTATAAACAATTTTAACAATCTTTTTGCTCTTCTTAAATTTTT
ATCTTTATTTTCCGTTGGAATTGAGTTTTAGGCAAAAAATGCAATTTTGA
TTTGAGCAACAAAAGTTAAAGTTAGAAAAAGTTAGAGGGGGTCCTATTTT
CGGTATTTTCAAA Coding sequence (CDS) from alignment at sc0000802:49712..51074- >TCONS_00030234 ID=TCONS_00030234|Name=TCONS_00030234|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0000802:49712..51074- (Clytia hemisphaerica)
GATATCTATGGAAAACCTGCCGTGACCGTTGTCGCATCTGTAGAAATCGA
CAGGATGGAGCTTGTGTTTCTACAACCAAAGCAGAATGTGGTGCTAAAAT
GATGTGCAGATGTTCCGGTGGTTATTATCCTTACAAAAGAAGTCTGTGGG
AATCGACAACCTGTAGATTGGGATTGTAAAAAACAAATCACGAGGCCATG
AGGTTGTTATCCGTAGCCCTGTTGTTGACAATCGTGGTAATGGAGGTCAA
CGGAGGATGTTGGGAGGCCTGGAGTCGATGTACTGGATGGAGTAAGCCAG
GAACCGGATATCTATGGAAAACCTGCCGTGACCGTTGTCGCATCTGTAGA
AATCGACAGGATGGAGCTTGTGTTTCTACAACCAAAGCAGAATGTGGTGC
TAAAATGATGTGCAGATGTTCCGGTGGTTATTATCCTTACAAAAGAAGTC
TGTGGGAATCGACAACCTGTAGATTGGGATTGTAAAAAACAAATCACGAG
GCCATGAGGTTGTTATCCGTAGCCCTGTTGTTGACAATCGTGGTAATGGA
GGTCAACGGAGGATGTTGGGAGGCCTGGAGTCGATGTACTGGATGGAGTA
AGCCAGGAACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030234-exon-sc0000802-1575043694:50948..51074 | TCONS_00030234-exon-sc0000802-1575043694:50948..51074 | Clytia hemisphaerica | exon |
| TCONS_00030234-exon-sc0000802-1575043694:49712..50144 | TCONS_00030234-exon-sc0000802-1575043694:49712..50144 | Clytia hemisphaerica | exon |
| TCONS_00030234-exon-sc0000802-1510915933:50948..51074 | TCONS_00030234-exon-sc0000802-1510915933:50948..51074 | Clytia hemisphaerica | exon |
| TCONS_00030234-exon-sc0000802-1510915933:49712..50144 | TCONS_00030234-exon-sc0000802-1510915933:49712..50144 | Clytia hemisphaerica | exon |
| TCONS_00030234-exon-sc0000802-1491911889:50948..51074 | TCONS_00030234-exon-sc0000802-1491911889:50948..51074 | Clytia hemisphaerica | exon |
| TCONS_00030234-exon-sc0000802-1491911889:49712..50144 | TCONS_00030234-exon-sc0000802-1491911889:49712..50144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000802 | supercontig | sc0000802:49712..51074 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029230 | Macin |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006952 | defense response |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006952 |
defense response |
Blast
The following BLAST results are available for this feature:
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