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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030212 ID=TCONS_00030212|Name=TCONS_00030212|organism=Clytia hemisphaerica|type=transcript|length=1079bp
AATTATTCAATGATTATTGGTTTAGCTATATATGCAAAAAATACCCATTT
AAGTGGGGGATATGCCATAAATTCACTTTTACAACTAAAACGATTGAAAA
GTTATTTGGAAAAACTCACAACAGCTTGACGGAAGGtcacagaaaaaaaa
caagatgAGTACCGATATTTGATGACCTATCTCAATTTCATGGCCAATTG
GGAACACCAAAGCGAAACAGATATTCAAAGCGTCATCGATGAGCAACGAC
TATTCAAACAACTTGACGATTTCGAATCCGACAAAAAAGTGGATGACGTG
TTTAAAACCATGATTGATCTGGCGAAGAAGGTACGCGATGAGACGATCGA
GGCTGATGCAATCCAAATAGCAGCTGATACAGCGGCTGTGGCTTCTTTCT
GGTCTTTTGGGATGGGTATGGCCGCCTTTGCATCTCTCGAAGCTACCGAA
ATAGCCTTGAAAGCTAGTATTTCCAAGAAGAGCAAAGAGTTGAACGAGAA
AATGACAACGGCAGACAGTGATATTGCTAAAAAGatcaacaaaaatgttt
ttgactaCATCAGTCTTTACAAGAATAACAACAACATTATAAAAGCTCAA
GATCCAAAGGGAATGGGTTTGAGAGAAGCACGTGATGCAATTCATGTCTG
AAGTTGACACTCATTACGCTGGCGATGGAGGCTTGACTGTCTCCAACTTT
GTGCAGATGGCAGCATCAGCACGCATCGCCTTCAACGAACAAGAAATTAA
CGACGTTTACGACGCGCTCGAttcacttaagggctctgaccatagtcaga
aaattgattttagtatctgaacataaaagttgtGTTTTAGATTCtctaac
acttttaacaaagaattgcctttataaattgctttttaatcaaatccctt
aagagtaattaagaatttacttgcaaaaatgacgttatgaactttaaaaa
gacgttaataatatgttgcatcaatttcttttataaaaagtgctaagttt
taatgggtaattaacctttttgtttcgaacttttttcaaactgtccgtaa
agaattgaactattttaaattttgcggNN Run BLAST on NCBI protein sequence of TCONS_00030212-protein >TCONS_00030212-protein ID=TCONS_00030212-protein|Name=TCONS_00030212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MTYLNFMANWEHQSETDIQSVIDEQRLFKQLDDFESDKKVDDVFKTMIDL
AKKVRDETIEADAIQIAADTAAVASFWSFGMGMAAFASLEATEIALKASI
SKKSKELNEKMTTADSDIAKKINKNVFDYISLYKNNNNIIKAQDPKGMGL
REARDAIHV Run BLAST on NCBI transcript from alignment at sc0000800:74088..75804- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030212 ID=TCONS_00030212|Name=TCONS_00030212|organism=Clytia hemisphaerica|type=transcript|length=1717bp|location=Sequence derived from alignment at sc0000800:74088..75804- (Clytia hemisphaerica)
AATTATTCAATGATTATTGGTTTAGCTATATATGCAAAAAATACCCATTT
AAGTGGGGGATATGCCATAAATTCACTTTTACAACTAAAACGATTGAAAA
GTTATTTGGAAAAACTCACAACAGCTTGACGGAAGGTGAGATTTACTTTT
TTCAATTTGTTTGGGACAAAGAAACACTGCTGTCCCTTATAAAAAAAGGC
TGTGTGTAATAAGTAGGGGCTACAAAAGGTGAGGTGAAAAGATACTTTTA
CTTTTTCGTGCTTTGATTGTAAGGGTACAACGCTCAAATCGCCACCATTG
GTCTTATTTAAACCCTGAACTACACACAAATCTGTAAGGCCTAAAGGCTA
GACCCGCGGTCTTTATCGAAAAGTGAAACACGCAATTTCACTGGTTTGAG
AGATGCAAAATAGCGTTTGCCGCCTACTTTTTTTGATCTCGCGCTCCGAA
AACAATTAAAATGCTAGATTCTATCCGTTGATTGGCACGAATGTTAAAAA
GTCAAATTTCTGCTTCACTTTTTTTGTTGGAGAAAGCTGAAAGTTGCCTA
TCTCGCCCTTCGGGCTTTACAGATCTGTGGAATTACATAGGATAATAACA
TTAGGATAGTACTGTAATTTACACAGTGCTTTTCTTGAAAGTTGCCTATC
TCGCCCTTCGGGCTTTACAGATCTGTGGAATTACATAGGATAATAACATT
AGGATAGTACTGTAATATTATGGAACAGATTTATCTGTGTATTCAATGAA
TCTTTGTTTCTTTCTTCCACTAGGTCACAGAAAAAAAACAAGATGAGTAC
CGATATTTGATGACCTATCTCAATTTCATGGCCAATTGGGAACACCAAAG
CGAAACAGATATTCAAAGCGTCATCGATGAGCAACGACTATTCAAACAAC
TTGACGATTTCGAATCCGACAAAAAAGTGGATGACGTGTTTAAAACCATG
ATTGATCTGGCGAAGAAGGTACGCGATGAGACGATCGAGGCTGATGCAAT
CCAAATAGCAGCTGATACAGCGGCTGTGGCTTCTTTCTGGTCTTTTGGGA
TGGGTATGGCCGCCTTTGCATCTCTCGAAGCTACCGAAATAGCCTTGAAA
GCTAGTATTTCCAAGAAGAGCAAAGAGTTGAACGAGAAAATGACAACGGC
AGACAGTGATATTGCTAAAAAGATCAACAAAAATGTTTTTGACTACATCA
GTCTTTACAAGAATAACAACAACATTATAAAAGCTCAAGATCCAAAGGGA
ATGGGTTTGAGAGAAGCACGTGATGCAATTCATGTCTGAAGTTGACACTC
ATTACGCTGGCGATGGAGGCTTGACTGTCTCCAACTTTGTGCAGATGGCA
GCATCAGCACGCATCGCCTTCAACGAACAAGAAATTAACGACGTTTACGA
CGCGCTCGATTCACTTAAGGGCTCTGACCATAGTCAGAAAATTGATTTTA
GTATCTGAACATAAAAGTTGTGTTTTAGATTCTCTAACACTTTTAACAAA
GAATTGCCTTTATAAATTGCTTTTTAATCAAATCCCTTAAGAGTAATTAA
GAATTTACTTGCAAAAATGACGTTATGAACTTTAAAAAGACGTTAATAAT
ATGTTGCATCAATTTCTTTTATAAAAAGTGCTAAGTTTTAATGGGTAATT
AACCTTTTTGTTTCGAACTTTTTTCAAACTGTCCGTAAAGAATTGAACTA
TTTTAAATTTTGCGGNN Coding sequence (CDS) from alignment at sc0000800:74088..75804- >TCONS_00030212 ID=TCONS_00030212|Name=TCONS_00030212|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0000800:74088..75804- (Clytia hemisphaerica)
ATGACCTATCTCAATTTCATGGCCAATTGGGAACACCAAAGCGAAACAGA
TATTCAAAGCGTCATCGATGAGCAACGACTATTCAAACAACTTGACGATT
TCGAATCCGACAAAAAAGTGGATGACGTGTTTAAAACCATGATTGATCTG
GCGAAGAAGGTACGCGATGAGACGATCGAGGCTGATGCAATCCAAATAGC
AGCTGATACAGCGGCTGTGGCTTCTTTCTGGTCTTTTGGGATGGGTATGG
CCGCCTTTGCATCTCTCGAAGCTACCGAAATAGCCTTGAAAGCTAGTATT
TCCAAGAAGAGCAAAGAGTTGAACGAGAAAATGACAACGGCAGACAGTGA
TATTGCTAAAAAGATCAACAAAAATGTTTTTGACTACATCAGTCTTTACA
AGAATAACAACAACATTATAAAAGCTCAAGATCCAAAGGGAATGGGTTTG
AGAGAAGCACGTGATGCAATTCATGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030212-exon-sc0000800-1575043694:75670..75804 | TCONS_00030212-exon-sc0000800-1575043694:75670..75804 | Clytia hemisphaerica | exon |
| TCONS_00030212-exon-sc0000800-1575043694:74088..75031 | TCONS_00030212-exon-sc0000800-1575043694:74088..75031 | Clytia hemisphaerica | exon |
| TCONS_00030212-exon-sc0000800-1510915933:75670..75804 | TCONS_00030212-exon-sc0000800-1510915933:75670..75804 | Clytia hemisphaerica | exon |
| TCONS_00030212-exon-sc0000800-1510915933:74088..75031 | TCONS_00030212-exon-sc0000800-1510915933:74088..75031 | Clytia hemisphaerica | exon |
| TCONS_00030212-exon-sc0000800-1491911889:75670..75804 | TCONS_00030212-exon-sc0000800-1491911889:75670..75804 | Clytia hemisphaerica | exon |
| TCONS_00030212-exon-sc0000800-1491911889:74088..75031 | TCONS_00030212-exon-sc0000800-1491911889:74088..75031 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000800 | supercontig | sc0000800:74088..75804 - |
Blast
The following BLAST results are available for this feature:
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