TCONS_00030218 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030218
Unique NameTCONS_00030218
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030218 ID=TCONS_00030218|Name=TCONS_00030218|organism=Clytia hemisphaerica|type=transcript|length=1265bp
TAAAGTTTCAATAATTTCAGTACAAGAAATTAAATCGtatttgcaaactt
caaaatgtCCAGAATGTTTTATCATCTTATCGTGATCGTAAAGATCTTGA
CCAGCCCTCCAGTGAGATGCTTGGGTCAAATCTTTGACTTGGTTGAAACT
GGACACACCTTTGCGAATGAATCTTATTACGAGGTGACGTTAAAGAGCGA
TCGACAATGTATTGGCTTGTGTAAATATAACCAATTATGCGTCGCTTATG
AAGCGACGCCGATCATATTAACAACGACTGGAATAAAAGGCGTCGAATGT
CGATTCTTTGATTTCACACATCATTATTACCGCCAAAATGTTGCATTTTC
ATTGGTCGAGAAAATTGGTGCCCGATTGTATTCAACCAATATTGAAGCGA
AAACGTGTAAAGATTGGTATCAATATGGGTACAAAAAGAATGGTGTATAT
GAAGTAAAATTGCCAAGTGGAAAACAAAATGTATATTGCTTCATGGAGGG
TGAGGGCGGAGGGTGGATGGCTTTTCAAAGGCGTTTCGATGGATCAGTTT
CATTTCACGACAAGAGTTTTAGCCAGTATGAGAATGGCTTTGGAGTATCT
GATGGTGGAGAATATTGGTTAGGCCTTGAGAAGTTACACCTTTTGACTAC
ATCAAAATCTCACGATCTTTTTGTCATCGTCAAAACCTTCTCCAACGAAA
CTCAAGTCAAGCGCTTTGCTAGTTTCGCCATCGGTACACCAGCTTCGAAA
TACGTTTTCGCATACGATAAAGTGTTACCACGATACAGTGAATTCGAATT
GTTTAAACGCCCTCAGGGACAGAAGTTCAGCACCTTTGACCAAGATAATG
ACTCGAAAGGTAACGGCGCGTGCTCCTCGCTTTACCCCGGAGGATGGTGG
TTCAGCAATTGTCATGACGACTTTATGAACGGACAATATTATCCGAATGA
AGTTAGCGGTTACGGCACGGGTCTACATTGGTAcaagtttcaaaataata
atGGCTACAAATCGCTAAAGAAAACTCTTCTCCTTGTCAGAGAGaattaa
aaatgttgaaatttcataattgaatttctaacctaaaatattttggaatt
tgTTGTTTTCTCAAAAGATGGACCGTAGAATTGAGACTTTTTAGATGTAG
AGCACCCCCTACCACCAAGGTAGCTGCTAATAACTTTAATCACACGTGTG
ATAGtattggcacaaaagggaaaacTTTTCATTCAACTACATATTAAAAC
TACAAATTTAAATAA
Run BLAST on NCBI

protein sequence of TCONS_00030218-protein

>TCONS_00030218-protein ID=TCONS_00030218-protein|Name=TCONS_00030218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MSRMFYHLIVIVKILTSPPVRCLGQIFDLVETGHTFANESYYEVTLKSDR
QCIGLCKYNQLCVAYEATPIILTTTGIKGVECRFFDFTHHYYRQNVAFSL
VEKIGARLYSTNIEAKTCKDWYQYGYKKNGVYEVKLPSGKQNVYCFMEGE
GGGWMAFQRRFDGSVSFHDKSFSQYENGFGVSDGGEYWLGLEKLHLLTTS
KSHDLFVIVKTFSNETQVKRFASFAIGTPASKYVFAYDKVLPRYSEFELF
KRPQGQKFSTFDQDNDSKGNGACSSLYPGGWWFSNCHDDFMNGQYYPNEV
SGYGTGLHWYKFQNNNGYKSLKKTLLLVREN
Run BLAST on NCBI

transcript from alignment at sc0000800:37519..38783

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030218 ID=TCONS_00030218|Name=TCONS_00030218|organism=Clytia hemisphaerica|type=transcript|length=1265bp|location=Sequence derived from alignment at sc0000800:37519..38783 (Clytia hemisphaerica)
TTATTTAAATTTGTAGTTTTAATATGTAGTTGAATGAAAAgttttccctt
ttgtgccaataCTATCACACGTGTGATTAAAGTTATTAGCAGCTACCTTG
GTGGTAGGGGGTGCTCTACATCTAAAAAGTCTCAATTCTACGGTCCATCT
TTTGAGAAAACAAcaaattccaaaatattttaggttagaaattcaattat
gaaatttcaacatttttaattCTCTCTGACAAGGAGAAGAGTTTTCTTTA
GCGATTTGTAGCCattattattttgaaacttgTACCAATGTAGACCCGTG
CCGTAACCGCTAACTTCATTCGGATAATATTGTCCGTTCATAAAGTCGTC
ATGACAATTGCTGAACCACCATCCTCCGGGGTAAAGCGAGGAGCACGCGC
CGTTACCTTTCGAGTCATTATCTTGGTCAAAGGTGCTGAACTTCTGTCCC
TGAGGGCGTTTAAACAATTCGAATTCACTGTATCGTGGTAACACTTTATC
GTATGCGAAAACGTATTTCGAAGCTGGTGTACCGATGGCGAAACTAGCAA
AGCGCTTGACTTGAGTTTCGTTGGAGAAGGTTTTGACGATGACAAAAAGA
TCGTGAGATTTTGATGTAGTCAAAAGGTGTAACTTCTCAAGGCCTAACCA
ATATTCTCCACCATCAGATACTCCAAAGCCATTCTCATACTGGCTAAAAC
TCTTGTCGTGAAATGAAACTGATCCATCGAAACGCCTTTGAAAAGCCATC
CACCCTCCGCCCTCACCCTCCATGAAGCAATATACATTTTGTTTTCCACT
TGGCAATTTTACTTCATATACACCATTCTTTTTGTACCCATATTGATACC
AATCTTTACACGTTTTCGCTTCAATATTGGTTGAATACAATCGGGCACCA
ATTTTCTCGACCAATGAAAATGCAACATTTTGGCGGTAATAATGATGTGT
GAAATCAAAGAATCGACATTCGACGCCTTTTATTCCAGTCGTTGTTAATA
TGATCGGCGTCGCTTCATAAGCGACGCATAATTGGTTATATTTACACAAG
CCAATACATTGTCGATCGCTCTTTAACGTCACCTCGTAATAAGATTCATT
CGCAAAGGTGTGTCCAGTTTCAACCAAGTCAAAGATTTGACCCAAGCATC
TCACTGGAGGGCTGGTCAAGATCTTTACGATCACGATAAGATGATAAAAC
ATTCTGGacattttgaagtttgcaaataCGATTTAATTTCTTGTACTGAA
ATTATTGAAACTTTA

Coding sequence (CDS) from alignment at sc0000800:37519..38783

>TCONS_00030218 ID=TCONS_00030218|Name=TCONS_00030218|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000800:37519..38783 (Clytia hemisphaerica)
ttaattCTCTCTGACAAGGAGAAGAGTTTTCTTTAGCGATTTGTAGCCat
tattattttgaaacttgTACCAATGTAGACCCGTGCCGTAACCGCTAACT
TCATTCGGATAATATTGTCCGTTCATAAAGTCGTCATGACAATTGCTGAA
CCACCATCCTCCGGGGTAAAGCGAGGAGCACGCGCCGTTACCTTTCGAGT
CATTATCTTGGTCAAAGGTGCTGAACTTCTGTCCCTGAGGGCGTTTAAAC
AATTCGAATTCACTGTATCGTGGTAACACTTTATCGTATGCGAAAACGTA
TTTCGAAGCTGGTGTACCGATGGCGAAACTAGCAAAGCGCTTGACTTGAG
TTTCGTTGGAGAAGGTTTTGACGATGACAAAAAGATCGTGAGATTTTGAT
GTAGTCAAAAGGTGTAACTTCTCAAGGCCTAACCAATATTCTCCACCATC
AGATACTCCAAAGCCATTCTCATACTGGCTAAAACTCTTGTCGTGAAATG
AAACTGATCCATCGAAACGCCTTTGAAAAGCCATCCACCCTCCGCCCTCA
CCCTCCATGAAGCAATATACATTTTGTTTTCCACTTGGCAATTTTACTTC
ATATACACCATTCTTTTTGTACCCATATTGATACCAATCTTTACACGTTT
TCGCTTCAATATTGGTTGAATACAATCGGGCACCAATTTTCTCGACCAAT
GAAAATGCAACATTTTGGCGGTAATAATGATGTGTGAAATCAAAGAATCG
ACATTCGACGCCTTTTATTCCAGTCGTTGTTAATATGATCGGCGTCGCTT
CATAAGCGACGCATAATTGGTTATATTTACACAAGCCAATACATTGTCGA
TCGCTCTTTAACGTCACCTCGTAATAAGATTCATTCGCAAAGGTGTGTCC
AGTTTCAACCAAGTCAAAGATTTGACCCAAGCATCTCACTGGAGGGCTGG
TCAAGATCTTTACGATCACGATAAGATGATAAAACATTCTGGacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017291XLOC_017291Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030218-proteinTCONS_00030218-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030218-exon-sc0000800-1491911889:37519..38783TCONS_00030218-exon-sc0000800-1491911889:37519..38783Clytia hemisphaericaexon
TCONS_00030218-exon-sc0000800-1510915933:37519..38783TCONS_00030218-exon-sc0000800-1510915933:37519..38783Clytia hemisphaericaexon
TCONS_00030218-exon-sc0000800-1575043694:37519..38783TCONS_00030218-exon-sc0000800-1575043694:37519..38783Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000800supercontigsc0000800:37519..38783 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0982852	0	0	0	0	0.0863868	0	0	0.140271	0	0.111875	1.94392	1.53149	0.0190771	0.061418	0.075662	0	2.67852	1.38276	0	0	0	0	0	0	0	0	0.0372893	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
[Close]
BLAST of TCONS_00030218 vs. Swiss-Prot (Human)
Match: MFAP4 (Microfibril-associated glycoprotein 4 OS=Homo sapiens GN=MFAP4 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 9.474e-33
Identity = 82/219 (37.44%), Postives = 121/219 (55.25%), Query Frame = 1 
Query:  406 CKDWYQYGYKKNGVYEV--KLPSGKQNVYCFMEGEGGGWMAFQRRFDGSVSFHDKSFSQYENGFGVSDGGEYWLGLEKLHLLTTSKSHDLFVIVKTFSNETQVKRFASFAIGTPA-SKYVFAYDKVLPRYSE---FELFKRPQGQKFSTFDQDNDSKGNGACSSLYPGGWWFSNCHDDFMNGQYYPNEVSGYGTGLHWYKFQNNNGYKSLKKTLLLVRE 1044
            C D Y  GY+ +GVY +    PS    V+C M  EGG W  FQ+RF+GSVSF  + ++ Y+ GFG +DG EYWLGL+ +HLLT  + ++L V ++ F N T   ++A F+I   A S     Y   +  + +    +      GQKFSTFD+D D      C++L  G +WF +CH   +NG Y       Y  G++W +++    Y SLK+T + +R 
Sbjct:   41 CDDIYAQGYQSDGVYLIYPSGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVSFF-RGWNDYKLGFGRADG-EYWLGLQNMHLLTLKQKYELRVDLEDFENNTAYAKYADFSISPNAVSAEEDGYTLFVAGFEDGGAGDSLSYHSGQKFSTFDRDQDLFVQN-CAALSSGAFWFRSCHFANLNGFYLGGSHLSYANGINWAQWKGF--YYSLKRTEMKIRR 254
The following BLAST results are available for this feature:
BLAST of TCONS_00030218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFAP49.474e-3337.44Microfibril-associated glycoprotein 4 OS=Homo sapi... [more]
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