TCONS_00030081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030081
Unique NameTCONS_00030081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030081 ID=TCONS_00030081|Name=TCONS_00030081|organism=Clytia hemisphaerica|type=transcript|length=1384bp
CGTAATATTTTCGAGAAAAATAAATAGAAATGTACAATTCTATATATGAT
ATACATATATTACAATTATATTACAATAATAACAAGATAATTCGTTCGAA
AAGGCAAATTTGTAAAAATATTTCATAATATCTTAGAGAAAAATAATTAA
CGATTAAATGAAAATAAAATAAATAGATACAATAGAATATGTTAACCTAA
TATTTGAAAAGGGATAGTTGTTCACTTCATTTACATAAAATAGGTATTTA
TTTGGGGTTCAATCTCTTTCCCCACTATCGAGGATAACAGAGTACTTGAA
AGGTATGAACTGAAGTATCAAAACTCGACAAAATAAAGTAACGAAAGGAA
AGGATTACTACAGCAGCTTTTCTAATTTTTGAAGATAATACaaatttttt
ataagtttcttcaatttttcggGTCATGCGGCTGGGGTTGcctagcattc
tagctcattctGAGgaatttgctttgaccaccaCCTCTGATATTacacca
tatttatgcttattggatATCTAAAACCTTATACTTTAGGAGATAGTGAA
ATTGTCTAATTTCAGGGCTGGAACACTAGCAATTTGGTTgcttattatta
taaaaaaaatatgttcaCAAAAGTTTCCATAACTCATCGCTACAGCAAAC
GCAATTCTTATTAAACTTTGGAGATTTATGAAATGTCTTTTAGATAAGTA
AGATTAAAGTTACGGAAAGTATTTTTTCGACTTTAGAGCTTAGGTGGGGA
CTAATTTTTCACTGTTTAATTAGAATCGTTGTCATTTGCAGGATTGTCAA
TTCCACAAGCAGCTTGGTCTGATGGCTCTGATTCTTTGTCGACCGCACGT
TTAATAACATCCACCAAAAGTCTATTGATCTCATCTTTTTGGTACTTTCG
AATTAATACAGCTGTAAAATAAGATATTTAAAAAGTGATCGTATTGTGGA
GATACTCCAGGAAAATCGAAACATTTGGATCTATGTTCAATTTTCACAAA
AGATTTGTCTTGGCAGAAACTTGGAAATCATTTTGATTATCTTTCGGAAA
GCAGAACAGAATTAGTATCAAATTAAATCCTCACAGTCGATAAGGATCTT
CATGACCTAATTACCCGTGTTGGTGCATGAAAGAATTCAAAACAGAAAAA
TCTTACGGTGTTTCGCACTTTTGCCATTGCTATGGTTCGATTTTCGCGAT
GGTGTGTTGATTGTGCGAGAAACTATGGAGAGAGTTTGGTAAAATATCAC
ATAATAGCTCTTCTAAGCTAATAACTTTAAAATTAGACATTTAGTTCTGA
TAATTTTAACTTAAAAGTAAAAAGTATATCGTCCTCAAAGTAAACTACCC
CTAAAATATGTTCAAAATTAGTTGAAAGTGTTTT
Run BLAST on NCBI

transcript from alignment at sc0000790:130143..133028-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030081 ID=TCONS_00030081|Name=TCONS_00030081|organism=Clytia hemisphaerica|type=transcript|length=2886bp|location=Sequence derived from alignment at sc0000790:130143..133028- (Clytia hemisphaerica)
CGTAATATTTTCGAGAAAAATAAATAGAAATGTACAATTCTATATATGAT
ATACATATATTACAATTATATTACAATAATAACAAGATAATTCGTTCGAA
AAGGCAAATTTGTAAAAATATTTCATAATATCTTAGAGAAAAATAATTAA
CGATTAAATGAAAATAAAATAAATAGATACAATAGAATATGTTAACCTAA
TATTTGAAAAGGGATAGTTGTTCACTTCATTTACATAAAATAGGTATTTA
TTTGGGGTTCAATCTCTTTCCCCACTATCGAGGATAACAGAGTACTTGAA
AGGTATGAACTGAAGTATCAAAACTCGACAAAATAAAGTAACGAAAGGAA
AGGATTACTACAGCAGCTTTTCTAATTTTTGAAGATAATACAAATTTTTT
ATAAGTTTCTTCAATTTTTCGGGTCATGCGGCTGGGGTTGCCTAGCATTC
TAGCTCATTCTGAGGAATTTGCTTTGACCACCACCTCTGATATTACACCA
TATTTATGCTTATTGGATATCTAAAACCTTATACTTTAGGAGATAGTGAA
ATTGTCTAATTTCAGGGCTGGAACACTAGCAATTTGGTTGCTTATTATTA
TAAAAAAAATATGTTCACAAAAGTTTCCATAACTCATCGCTACAGCAAAC
GCAATTCTTATTAAACTTTGGAGATTTATGAAATGTCTTTTAGATAAGTA
AGATTAAAGTTACGGAAAGTATTTTTTCGACTTTAGAGCTTAGGTGGGGA
CTAATTTTTCACTGTTTAATTAGAATCGTTGTCATTTGCAGGATTGTCAA
TTCCACAAGCAGCTTGGTCTGATGGCTCTGATTCTTTGTCGACCGCACGT
TTAATAACATCCACCAAAAGTCTATTGATCTCATCTTTTTGGTACTTTCG
AATTAATACAGCTGTAAAATAAGATATTTAAAAAGGTACAACACCCGAAC
AACATGTTCTTTCATTTATTTGTTCACCAATATCTTATTCAATCAAGTTC
TAGGATATATTTACACTTTTTCAGTTGCAAAAAAATCTACGAGAAGGTTA
TAAACTCCATTCCATCATGATTCTATATCATCAGTTTTTCGATTTTGGAA
AAAACAAGTCCGGTCGAGCCCGTAGAACAATAAATTAATATAAGTTTCAA
CTAATAATGTCTTACCTTCCATACACTTTTGATGCTGCGTGCCTGTANAG
TTTTTCGATTTTGGAAAAAACAAGTCCGGTCGAGCCCGTAGAACAATAAA
TTAATATAACTTTCAACTAATAATGTCTTACCTTCCATACACTTTTGATG
CTGCGTGCCTGTAAATTTTTTCTTCTTCTGCAGGCCGTCCTTTGAAAATT
TGCTTCGTAGCTTTCTCGTCATCATAACGTCTAAAGCTTTCCGGACGGCG
TCCCGCGTACACTTTCCACCAGCTTGCTGAATGATCATCCGCTAAGAGGA
AAAACATATGAGTTTTTGTTTTTTTAATTATCCTTATTTTTAATTTTCCG
ATTCAAAATGCAGGTCGTCCTGCTCTGTGGCAATTTATCAATTTTCGAGG
TCGTTATTCTCCCACTTTCAATATAGTCGAATTAAACTTTACTCGTTTTT
CCTTTAAGACTAGTGTATTAAATTCACCCAACTGCCAATTTAGCTACATC
ATAGACAACATACCTTTGCCCTTCTCTTTCTTTCGGATCCCTCCAGTTCC
GCCTCCTCTTTCATAAATTCTGCCATGGTATTCAAAGGTTCTGGAACCTC
AGTACCAAAACCCGTTTCATCACTCGTGCACTGCTGATCCTCCAGGAATT
GCAGAATCCGATCTTGGTTCCTTCGAATAGTTTGCATCTCCATCATAACA
GAGTATTGGAATTCTGAAGGGGGTAAAAGAAAGAACTGTGATAAGTAAAT
GCCTAGTGTATCAATACAGTCTGAAAAACAAACAAAGAATTCATATATTT
ATAAACACTTGAGCACACAGAGGATCCATTATTTACTTTTTACTCTAACA
AAATTAAATGATCAAAAATTTAAAAAAAAGTGCACTTCTGTGATCTTATG
GACCGAATTGATCACATATGGTGTATAAAGCGAGGCTAAACTGATTTATT
GTTCTACGGGCCCGACTGACCCTAAATATTGGTTTGCTTTGACAAACCCG
TACACAAATAAAGAAGGTTTTAGAACATCGTGACTCTCACTATTTCTTGC
TTTGTCATTATATCTGTTTTTCAAGATTCTAAATTTATTGGAAAAAGAAT
GATTTCCAAAGTTGTGTACTTACGTTTGTTTGGCATTTCCTTAAAGCTCT
TTCCGCCATCTCCATATTTCGAGCGTAGGTTTGACTGGGACGCTATAAAG
ATAATCATTAAAGATATATAACATTAGTTTTTTTAAGGCAAACTTTCACA
CAATGAGTTTAAATATTGACCCTAACTCTTTTTGCAGTGATCGTATTGTG
GAGATACTCCAGGAAAATCGAAACATTTGGATCTATGTTCAATTTTCACA
AAAGATTTGTCTTGGCAGAAACTTGGAAATCATTTTGATTATCTTTCGGA
AAGCAGAACAGAATTAGTATCAAATTAAATCCTCACAGTCGATAAGGATC
TTCATGACCTAATTACCCGTGTTGGTGCATGAAAGAATTCAAAACAGAAA
AATCTTACGGTGTTTCGCACTTTTGCCATTGCTATGGTTCGATTTTCGCG
ATGGTGTGTTGATTGTGCGAGAAACTATGGAGAGAGTTTGGTAAAATATC
ACATAATAGCTCTTCTAAGCTAATAACTTTAAAATTAGACATTTAGTTCT
GATAATTTTAACTTAAAAGTAAAAAGTATATCGTCCTCAAAGTAAACTAC
CCCTAAAATATGTTCAAAATTAGTTGAAAGTGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017208XLOC_017208Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030081-exon-sc0000790-1575043694:132094..133028TCONS_00030081-exon-sc0000790-1575043694:132094..133028Clytia hemisphaericaexon
TCONS_00030081-exon-sc0000790-1575043694:130143..130591TCONS_00030081-exon-sc0000790-1575043694:130143..130591Clytia hemisphaericaexon
TCONS_00030081-exon-sc0000790-1510915933:132094..133028TCONS_00030081-exon-sc0000790-1510915933:132094..133028Clytia hemisphaericaexon
TCONS_00030081-exon-sc0000790-1510915933:130143..130591TCONS_00030081-exon-sc0000790-1510915933:130143..130591Clytia hemisphaericaexon
TCONS_00030081-exon-sc0000790-1491911889:132094..133028TCONS_00030081-exon-sc0000790-1491911889:132094..133028Clytia hemisphaericaexon
TCONS_00030081-exon-sc0000790-1491911889:130143..130591TCONS_00030081-exon-sc0000790-1491911889:130143..130591Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000790supercontigsc0000790:130143..133028 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0919777	0	0.0521337	0.216809	0.430605	0.0412996	0.313518	0.195372	0.191649	0.0372524	0.112501	0.155458	0.218956	0.260055	0.0947682	0.0943224	0.36104	0.168381	0.341562	0.13791	1.07823	0.689693	0.203839	0.637712	0.0482744	0.304791	0.399462	0.803142	0.129711	0.0998057
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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