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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029912 ID=TCONS_00029912|Name=TCONS_00029912|organism=Clytia hemisphaerica|type=transcript|length=1203bp
AGTAACATTGTAGGAATCATCCATTCAAGCTGTAACACGCTCTTATGATT
GCATTGTATATGTTTATATAcctacacgaatattactagTTTTCGGACAC
ACATCGGAGAATTGTGACGAGGAAGAGatgttttaGACGTCAAGGCTTCT
ATCGATGACGTTCTCGAGCATGCTTTTGCCGTTCTCATGCCGAGTTCATC
CGCTTAATTCGTAGTAGAAAGACGCTGATTGGCGTGTTATTGGCGTTCTT
GGGCGTTTGTGGGCGTATGAACTATGTACGTGGTGGCGGAATGACAATAA
CGAAAGATTACAACTGGACAACTCAAAGATTTGTATGATAAAGAGCCATT
CTTTGGCTGTAAAATCTTTTGGAAAGCTTATCTAAAAAAGATCGTTTATG
TACAAGCAAACATTCAATATTGTTGACTCAGCGTTTTCAAGCGTTAACGT
TTTCTAGGTTAAATTATTCAGTTTTAACTTATTACTTAGTTAGggctttg
tttttattcaaatcaTTTTACCGTAACTGTCAGGtataatttttgacaat
ttttatacaacttattcaatttttttttaaatcagtccAATTTATTTATT
TCGTTGGTGTTTTTCGATGTTGAAATTCtgttagtctacacaatagacag
ctccaggcttttatgCCTTACTCTTACTTACGCCTTACTTACGAAGTGTA
AGaattttacgctcgaaacgaaggaagatacgACGTAGCCTAAAATTCTA
TAGGATCGTAGGCAATCGTTTCTGGTTTAAGATCCCGAAAGTTGAAGTCT
TTTAGGATCGTTAAGAAAAGATATATTagtgaaaacaagaaaaacgCCGT
GGAACTTTGTCGAAATCTAATACAGTAAAAAGCTTTCTTGATAGAAAGCT
ATTCAACATATTTTACAACTGCAAGATAGTAAGTGATTGCGACATTCCAT
ATTCCAAAATTCGATAAGGGTTTGTTTACATAACGTATCAAATATCATCA
TAAATTTGACTGTCCAGATCAAAAGTAGACATTAAGCACTGACCCCCTGA
GATGCTTTTCCATTCATGCTCGAAAATGTTTGTTTTACTGACcatcttac
acgtttttttataagaacatctaaaatttttgaagccttggggtgttctt
aattttttgggttttaagcctaaaaatgttcttaacatgctcttattttc
gcc Run BLAST on NCBI transcript from alignment at sc0000777:94737..98486+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029912 ID=TCONS_00029912|Name=TCONS_00029912|organism=Clytia hemisphaerica|type=transcript|length=3750bp|location=Sequence derived from alignment at sc0000777:94737..98486+ (Clytia hemisphaerica)
AGTAACATTGTAGGAATCATCCATTCAAGCTGTAACACGCTCTTATGATT
GCATTGTATATGTTTATATAcctacacgaatattactaggcaagtattca
acggccttgaaattaacacgcaaaaaattaacacgaattttatttgcttt
ttcaaggacaccacggctggttttaattaaaggggtttcaattaacacga
aatttcttAATTCGTGTTAATTACGCATGTCTACTTATTTTCGTGTATTA
AGGGTAGTTCAGAGACAGTAAATTTATTCAGAGCGTTTTCCTGTCTTGAT
Ttaatacatccctgtctcacagccctggtgaaacttttcccacagtgggg
atgaaGTCCATCAAAATCCCAATAGATTATATTTTTCTCAGGTCAAAGGG
atttaggcaaatggagggtaccttttttggatttccaaagtcccgctaaa
gGTCGGAAAATCAAAGgggcggcaccccccgtcagctctAAATCCCCTGG
AGGGATGGTGCAGTTTTCTCTATTGAATCTTATTTAAAATAAGGAtgaaa
gaaaaagtcaattttccatttGTGCTGAAATTGTTGCGTATCTTTTCcac
cgggacgaaattttggccaaatattccaatggggctggggtcccacaggg
tctgtgacacaggagtgTTTTAACAGCGTAAGCTACAGGGGACTTTACTT
GTTTTCACGCAATAAAGgtgatttaatttatttttctccCTTTTTAGTTT
TCGGACACACATCGGAGAATTGTGACGAGGAAGAGGTAAcgtgttttctt
ttaaaaaaaattttcgccaaaaaaaGATTGCTTTTACTTCCTCCACAGTA
ATCATTAGTTACCATGGGATGTTAGACATtcttgaaagtaattttttaaa
taaatagcTTTCAATAGAATAGCGGAACTAATATTCAGTATAccaagttc
ttccgtctcagaggGATTTTCGTCTCGGCGAGGTCtctaaatttaacaaa
attctacaaaatttgaagaatcttgCATGATTTGTCCCATTTCCGTACAG
AAAATAATGTTTTGGCCAataaaaactaacaaaaaacATCTCTTGATTTA
GCCTGTTTATAATTCGTAAAAACCCAACCCCCGCCTAAGCAAAACAATAA
CATTTACGAACCAAAAAAGATGAGAATTTTATCCAATAACATTACAATGG
ACAACAATGCTCTTCATTAATATTAATGCAACGCGCAAAGACTTTCTAAA
GGCTGATTAATccaataaagattttttttcaaacaaaacaaacGCGAAGA
AAAGCTTTTTATTAGTTAAACAATATAGAGTTCTTTTTTTGCCCACAAAA
CAGATATTTCCAGATCTTAGAAGACTGAAGTTTTCTCAATATTACGACAG
GGCTCAAATAAAAGagttgaatagaccttttcataaattacgtcacgaac
atcacttgcctcgttttgaaattattgccatagtgatcaactcccagcgg
attttattaaactagtttctattcataaaaaaatcatttaatgtctcaag
ggacatgatcaccatggaaattgtttgaatacgaggcaagtgatgttcat
gacgtaatttatgaaaaggtctattgcaatACAAAATGCCTCTAATTCCA
AGCTCGTAGCATCTACTTCAATCCATTGTCTGGTCTATTTCCTAAGGTTC
AATAATGATTAAGTTTAGCAGATTTATTAAATTTTCCTGGTTATATCTGT
AATTAGTTTAAGACCACGCCCACATATAACGGTTCCGTtttgctccgaaa
cgaaatcaagccattctattggttaaagtcgagttttacgtcacttctaa
ccaatagaatgactttatttcgtttcggagcaGAACAGAACCTTTAagtg
cgaacatggtctaaagCCAAGCATTTGTTTACGGTTTGGTAAGTGACAGC
CACCCTCATAAGAACATTATTGCATGAAAAAAGCTGGTTcttaaacaaat
tttaaaagcaCTACCATATTAAATGTTAAGATaatcataaaaatatttaa
aataaaatcttaTAAAACCAGTTAACCATCACCATCCTAAACAACCATCA
CCATACCAACCACATTAAACATCTTTCATAGACTGACCACCATTCAGTAA
AAAAGACCGCTATTGATTTATCCACAACACAAGTTGACCAACATCACCAC
CATAGCAAAAAGAATTGGTTTAAACGACATTTCGTTGGGTGGAAACACTC
TTTATAAACGCATACACATTCACTCATATTTTCATCCTCCAATCATTGTA
AGTCTGTTCACAAGGCAAAGGCTAAAGAGAACAACTCGCCATTCTTTAAA
TTTACGATAATGATAATTAACTTAACAGAATTTAATGTATTATAATCTTA
AGATACACATTAATCCGTACAAGTGAAATGTGGAGGGGTCGTTTTGCGGC
ATCTTAATTTCACGGCTATTCAACGGAATTGGGCATAATTTTGATCTGAG
TCGGGGTTGGTAGGAATTTTCCATGAAATTACCTCAATGAGAAGATCTCA
ACCATAATTATCTAGTAATTCGAGCCGAGCGAGCTCATGGGGATCCTCCG
TAACCTAAAACCTGGACGATATCCCGCGCGCTCGAATGCTCAATACTAAA
AAATGACttccttttatttttcagatgttttaGACGTCAAGGCTTCTATC
GATGACGTTCTCGAGCATGCTTTTGCCGTTCTCATGCCGAGTTCATCCGC
TTAATTCGTAGTAGAAAGACGCTGATTGGCGTGTTATTGGCGTTCTTGGG
CGTTTGTGGGCGTATGAACTATGTACGTGGTGGCGGAATGACAATAACGA
AAGATTACAACTGGACAACTCAAAGATTTGTATGATAAAGAGCCATTCTT
TGGCTGTAAAATCTTTTGGAAAGCTTATCTAAAAAAGATCGTTTATGTAC
AAGCAAACATTCAATATTGTTGACTCAGCGTTTTCAAGCGTTAACGTTTT
CTAGGTTAAATTATTCAGTTTTAACTTATTACTTAGTTAGggctttgttt
ttattcaaatcaTTTTACCGTAACTGTCAGGtataatttttgacaatttt
tatacaacttattcaatttttttttaaatcagtccAATTTATTTATTTCG
TTGGTGTTTTTCGATGTTGAAATTCtgttagtctacacaatagacagctc
caggcttttatgCCTTACTCTTACTTACGCCTTACTTACGAAGTGTAAGa
attttacgctcgaaacgaaggaagatacgACGTAGCCTAAAATTCTATAG
GATCGTAGGCAATCGTTTCTGGTTTAAGATCCCGAAAGTTGAAGTCTTTT
AGGATCGTTAAGAAAAGATATATTagtgaaaacaagaaaaacgCCGTGGA
ACTTTGTCGAAATCTAATACAGTAAAAAGCTTTCTTGATAGAAAGCTATT
CAACATATTTTACAACTGCAAGATAGTAAGTGATTGCGACATTCCATATT
CCAAAATTCGATAAGGGTTTGTTTACATAACGTATCAAATATCATCATAA
ATTTGACTGTCCAGATCAAAAGTAGACATTAAGCACTGACCCCCTGAGAT
GCTTTTCCATTCATGCTCGAAAATGTTTGTTTTACTGACcatcttacacg
tttttttataagaacatctaaaatttttgaagccttggggtgttcttaat
tttttgggttttaagcctaaaaatgttcttaacatgctcttattttcgcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029912-exon-sc0000777-1491911889:94737..94825 | TCONS_00029912-exon-sc0000777-1491911889:94737..94825 | Clytia hemisphaerica | exon |
| TCONS_00029912-exon-sc0000777-1510915933:94737..94825 | TCONS_00029912-exon-sc0000777-1510915933:94737..94825 | Clytia hemisphaerica | exon |
| TCONS_00029912-exon-sc0000777-1575043694:94737..94825 | TCONS_00029912-exon-sc0000777-1575043694:94737..94825 | Clytia hemisphaerica | exon |
| TCONS_00029912-exon-sc0000777-1491911889:95484..95521 | TCONS_00029912-exon-sc0000777-1491911889:95484..95521 | Clytia hemisphaerica | exon |
| TCONS_00029912-exon-sc0000777-1510915933:95484..95521 | TCONS_00029912-exon-sc0000777-1510915933:95484..95521 | Clytia hemisphaerica | exon |
| TCONS_00029912-exon-sc0000777-1575043694:95484..95521 | TCONS_00029912-exon-sc0000777-1575043694:95484..95521 | Clytia hemisphaerica | exon |
| TCONS_00029912-exon-sc0000777-1491911889:97411..98486 | TCONS_00029912-exon-sc0000777-1491911889:97411..98486 | Clytia hemisphaerica | exon |
| TCONS_00029912-exon-sc0000777-1510915933:97411..98486 | TCONS_00029912-exon-sc0000777-1510915933:97411..98486 | Clytia hemisphaerica | exon |
| TCONS_00029912-exon-sc0000777-1575043694:97411..98486 | TCONS_00029912-exon-sc0000777-1575043694:97411..98486 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000777 | supercontig | sc0000777:94737..98486 + |
Blast
The following BLAST results are available for this feature:
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