TCONS_00029816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029816
Unique NameTCONS_00029816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3131

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029816 ID=TCONS_00029816|Name=TCONS_00029816|organism=Clytia hemisphaerica|type=transcript|length=3131bp
TTTAGACCTGATGGTGGAAAATAAATTCCGAAATATATagtcaaagtttt
taaaaagatCTTTGTTATGGTAAAATGATGAGGAAAagtaaaaatactaa
aaaagaaATCGAAAGCGTTGGAGAGGAATATGGTGGCCACCAAGTTAATA
CAAGAGTCGTTTATTTTGGTGATGGTGGGAAGGAAATCCATggtgttttg
aagtttttcggTCATCTAAGATTGATGGATGATACTGTTTATGCAATTGT
CGAAACGGATGAGAGATGTACATGTAGTATTGGTAGCAGACCAATGGTAT
ATCGAAACGtttgacaaaaaaagaattgaaaaagttgaatatttcCTTCT
ACAGAACGTTAGTTGTTCAACCTGAAGAATTGATGAAAGAAGAATTCATG
TATGTGCAAAAAAAGAAAGAAATAGTGAATCACGatcttaaaaataaagt
taaagaGACTGCGCAAAGACAAGCGATATTCGCAAATGAACCAAACACTT
TGCATGAAGTGACTGAAAGACTTTCCGACCTGGATTTCTTCACACCTATA
CAATATGAAAGGGAAACATGTTATGAGCTTAATTTGACGGCACCGATTTA
CACCGAGGATTCGAAGCCGGATGAAATGGTAACAAAGCCAATACCAAGAC
CAAGACGAAGACCACATATCGCTTCTTATGATTTATTTGGAGAGAGAACA
TCTTATGAAGAAATCTCAGATATGCCAATATTGGATCCTGGTCTCATGCT
TCCATGGTCAAGTTCGAGTGAAAGTGCAACAAACCTACAGCCAATTGATT
TTGACGAAGGGAACGACGCAATGTCAGACGGAAATGATTCCATGGTGGTG
GAAGTTGACTATGACGATATATTCTCAATCAATGAGGTTCCTGCGGTTTG
GAGTGACCAGTCTGACCATCATTCTAATGGATTCAACATTGCAACGAACG
AGCCTTTCACACGAAATGAAACTATCATTGCCCCTCAAAAGGTAACTGCG
AGTTGGAGTGACCAGCCTGACCATTATTCTGCAAATAGATTCAATATTGC
ATCGAACGAGCCTTTCACAAATGAAACTATCATTACTCCTCAAAAGGTCC
CTGCGGTTTGGAGTGACCAGCCTGACCATTATTCTGCAAATAGATTCAAT
ATTGCATCGAACGAGCCTTTCACAGATGAAACTATCATTACTCCTCAAAA
GGTCCCTGCGGTTTGGAGTGTCCAGCCTGACCATCATCATTCTGCAAATG
GATTCAACATTACAACGAACGAGCCTTTCACAAATGAAACTATCATTGCT
CCTCAAAAGGTAACTGCGAGTTGGAGTGACCAGCCTGACCATCATTCTGC
AAATGGATTCAACATTACAACGAACGAGCCTTTCACAAATGAAACTATCA
TTGCTTCTCAAAAGGTCCCTGCGGTTTGGAGTGTCCAGCCTGACCACCAT
CATTCTGCAAATGGATTCAATATTGCATCGAACGAGCCTTTCACAAATGA
AACTATCATTACTCCTCAAAAGGTCCCTGCGGTTTGGAGTGTCCAGCCTG
ACCATCATCATTCTGCAAATGGATTCAACATTACAACGAACGAGCCTTTC
ACAAATGAAACTATCATTACTCCTCAAAAGGTAACTACGAGTTGGAGTGA
CCAGCCTGACCATCATTCTGCAAATGGATTCAACATTACAACGAACGAGC
CTTTCACAAATGAAACTATCATTGCTTCTCAAAAGGTCCCTGCGGTTTGG
AGTGTCCAGCCTGACCATCATCATTCTGCAAATGGATTCAACATTACAAC
GAACGAGCCTTTCACAAATGAAACTATCATTACTCCTCAAAAGGTAACTG
CGAGTTGGAGTGACCAGCCTGACCATCATTCTGCAAATGGATTCAATATT
ACAACGAACGAGCCTTTCACAAATGAAACTATCATTGCTCCTATCGATGC
GAACCCTCaagaatcaaaaatgaaaaaggaagaTATGGTTTGTAAAAATG
TGACAGGGCAGAATAGTGAAACAGAGGATGACTTATTAAAGAATTTCGAA
AGTCATTACTCGTGTCCTATCTGCTTGGACATTGCTGACGATGCAGTGGA
GTGTACGGATTGCTTTAAGATTTATTGCGGTGAATGTACACAAGGAATAA
ACACGTGTCCCAGCTGTCGCTGCACACCTTCTGCATGGCAACCAAGTCGT
AATGCTCGACAATTCATTGGTAATTTAAAAACCGATTGTCCTAATGATGG
ATGCAAGGAGAAGCCAACGCGGTCGAATCTGCAAGTTCATTTAGAGAAAT
GCGAATGGTCTTTGATTGCTTGCTCAAGCGATGGTTGTGATAAGAGAATC
AAGCAGAGTGGAATGGTGGAGCATTTGCTTCAATGTGGTCATTGTTTGAT
AAAGTGTTCGTCTAAAGGTTGTTTAGAACTGGTCAAAAGGAAGGATGTGG
AGGACCACAAGGATCGATGCTTATTTACCAATATCAATTGTATGAATTGC
AACGAAATGTTAGTACGCAAAAATGAAAGTATCCATTTGAATATTTGTAA
AGAGAAGATAATCAATTGCATGTTTTGTGGTTTTTCAGACACCAGAATGA
ATGTGATGGTACATTCGGTGCGTGTTCATTACGAGAAGGTTGCACACCCT
TTCGGTGAGATGTTGGAATCTATCAGAGTGCATCGATCGGTGTCGAATCA
TTATCCTTCGTATTTGCCGCCTTGAAAACGTCGTATGATAACGTATTTTa
agtaaatttttgaaagatttattttgaaatttcaatctgGTCATTTCCAA
TCCAGTCTGTTTAATGGTGATTTACAAAATAATTTGTCTTGGGATTTGTT
CATTAAAtgaacagaaaaataaaaatgggggttggaaattgtaactacga
aaacccaaaaataaggtaaatataggctaaaatcaggctatttagagcaa
aataagggaccttctctttggAGTGTTTAGGCACACTCATGGGTCCAAAG
TGGCTATCATTTCCAAAGTTTTCTAGCTAAAACGTGGAAGGAAGGAAGTA
TTTTGGAAAACGGAATATAATCAAATGGCGAGGAATAGATTTTGGCTAAA
ATAAGTCACAGGAAACAAAGTTTGATAGAGG
Run BLAST on NCBI

transcript from alignment at sc0000771:135814..140881+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029816 ID=TCONS_00029816|Name=TCONS_00029816|organism=Clytia hemisphaerica|type=transcript|length=5068bp|location=Sequence derived from alignment at sc0000771:135814..140881+ (Clytia hemisphaerica)
TTTAGACCTGATGGTGGAAAATAAATTCCGAAATATATagtcaaagtttt
taaaaagatCTTTGTTATGGTAAAATGATGAGGAAAagtaaaaatactaa
aaaagaaATCGAAAGCGTTGGAGAGGAATATGGTGGCCACCAAGTTAATA
CAAGAGTCGTTTATTTTGGTGATGGTGGGAAGGAAATCCATggtgttttg
aagtttttcggTCATCTAAGATTGATGGATGATACTGTTTATGCAATTGT
CGAAACGGTAATTAAATTTGTTTGCGGGAAGGATATTGCGAGTTCAAGTG
CTAACTACATCCCAGACTATACATACAATagagtcttcataactcgaatg
ctttcttaactcgaacaaattttctaGTCCCTTCAGCTAAGAATACTTTA
TACCAATCTCCATAACTAGAATTTTCCATTCGAGTAAATTAGGTCATCTT
TAGAACAGCTGTTAATTAATGATATCTGCTCAAAAGGATTGCCCTTGGAA
TTATTCGACCTTGTTCAACTCTAACAATATCTGCTCAAAAGGATTGCCCT
TGGAATTATTCGACCTTGTTCAACTCTAACAAAGTCTACACTTTAAGTAA
CTTTTAAGGGTTGATAGATCTATCTTCGCTGGCTTCATTGCTTTTAGGAT
GAGAGATGTACATGTAGTATTGGTAGCAGACCAATGGTATATCGAAACGt
ttgacaaaaaaagaattgaaaaagttgaatatttcCTTCTACAGAACGTT
AGTTGTTCAACCTGAAGAATTGATGAAAGAAGAATTCATGTATGTGCAAA
AAAAGAAAGGTACTTTTTATTGACTCTTTTTTATTAGGTAAAAATCTTTC
TTATTAGTAGGTAAAAAAAGACAAGTGAATATTAGCCATCAAAAAAGACT
TACACCATGCcatctcacagacccggtaggtttttttcagccagtagggg
ttaacggactgaaacttgatggggattgatattcctgtatttttttatgg
cttgggatttaaattctattgttttgaagTCAGAAAAGTCAGTGGGGATT
GGGAAAGAGCATATTATTTTGCAGTATGGATCAGTttgtttaattatttt
cagtgggaacaGAAGTTTTAGTATAATTTTCAACTGGAGAAGATATttcg
gccaatttttccagtggaaaagggtcccagtgggtctgtgagaagggggt
gtacttTCCAATGCCAACTTCTCTCTTCGATTAACCAACCCCATCAAACA
GAGATCTAGGCCNACTTTCCAATACCAACTTCTCTCTTCGATTACCTAAC
CCCATCAAACAGAGATATAGGCCCTAGTAGGTGTTGATTATAACATTATG
AGATCGTTCTTTTTGCTATGAGAAGACCTCTTTGTCCTAGGCTTAGGTGA
GGAGAGAGCTTCTTGTCGACTCTTCAGGATACTAAAGTTTTTTGTGTATC
CATTTCTTTTTCATCGTTTATCACGTTTATATAACTATTGTATCTATGAA
CTTTCCCTTTTCAGAAATAGTGAATCACGatcttaaaaataaagttaaag
aGACTGCGCAAAGACAAGCGATATTCGCAAATGAACCAAACACTTTGCAT
GAAGTGACTGAAAGACTTTCCGACCTGGATTTCTTCACACCTATACAATA
TGAAAGGGAAACATGTTATGAGCTTAATTTGACGGCACCGATTTACACCG
AGGATTCGAAGCCGGATGAAATGGTAACAAAGCCAATACCAAGACCAAGA
CGAAGACCACATATCGCTTCTTATGATTTATTTGGAGAGAGAACATCTTA
TGAAGAAATCTCAGATATGCCAAGTAACGTGTTATCGAGCTGTTTGCAAT
TTCCCTTTCTTACTTTCTTCCTTTCTTACATTTCTTCCCTCCAAGATtta
ttataagattttttttggaGTGAATTATTTATCCCAAGCCAAATTATTTC
TGACATGACAAATTTAAtcattcaaaaaatcattaaaattaaaAGTACAA
TTATGAATCACTTGAttataaaacatatatttatcGGTTCAATCGGTTTC
TGAACGTTCCTGACTTGTGAAGGGCAAGTAGGATATTCACAATGCCCAAA
TGTGATTTGTTACGGGGATTAGGTCATAATTTTCCAACTTGTTTAAAGGG
GTTATGACTAACTAACTCTCACTAAATGACTGTTTGTAGCTGATGGTTTA
TCCCATTGAATGATTTGAgttaatcttgatttttttccttgGGATAAAAG
ATGATTCAAActtgattttcagaaaattggatGATGTATTAAAAATATGT
ATGTTATGTATGCTGTGTGATATTCTATTTTATTCTATTTCTAGTATTGG
ATCCTGGTCTCATGCTTCCATGGTCAAGTTCGAGTGAAAGTGCAACAAAC
CTACAGCCAATTGATTTTGACGAAGGGAACGACGCAATGTCAGACGGAAA
TGATTCCATGGTGGTGGAAGTTGACTATGACGATATATTCTCAATCAATG
AGGTTCCTGCGGTTTGGAGTGACCAGTCTGACCATCATTCTAATGGATTC
AACATTGCAACGAACGAGCCTTTCACACGAAATGAAACTATCATTGCCCC
TCAAAAGGTAACTGCGAGTTGGAGTGACCAGCCTGACCATTATTCTGCAA
ATAGATTCAATATTGCATCGAACGAGCCTTTCACAAATGAAACTATCATT
ACTCCTCAAAAGGTCCCTGCGGTTTGGAGTGACCAGCCTGACCATTATTC
TGCAAATAGATTCAATATTGCATCGAACGAGCCTTTCACAGATGAAACTA
TCATTACTCCTCAAAAGGTCCCTGCGGTTTGGAGTGTCCAGCCTGACCAT
CATCATTCTGCAAATGGATTCAACATTACAACGAACGAGCCTTTCACAAA
TGAAACTATCATTGCTCCTCAAAAGGTAACTGCGAGTTGGAGTGACCAGC
CTGACCATCATTCTGCAAATGGATTCAACATTACAACGAACGAGCCTTTC
ACAAATGAAACTATCATTGCTTCTCAAAAGGTCCCTGCGGTTTGGAGTGT
CCAGCCTGACCACCATCATTCTGCAAATGGATTCAATATTGCATCGAACG
AGCCTTTCACAAATGAAACTATCATTACTCCTCAAAAGGTCCCTGCGGTT
TGGAGTGTCCAGCCTGACCATCATCATTCTGCAAATGGATTCAACATTAC
AACGAACGAGCCTTTCACAAATGAAACTATCATTACTCCTCAAAAGGTAA
CTACGAGTTGGAGTGACCAGCCTGACCATCATTCTGCAAATGGATTCAAC
ATTACAACGAACGAGCCTTTCACAAATGAAACTATCATTGCTTCTCAAAA
GGTCCCTGCGGTTTGGAGTGTCCAGCCTGACCATCATCATTCTGCAAATG
GATTCAACATTACAACGAACGAGCCTTTCACAAATGAAACTATCATTACT
CCTCAAAAGGTAACTGCGAGTTGGAGTGACCAGCCTGACCATCATTCTGC
AAATGGATTCAATATTACAACGAACGAGCCTTTCACAAATGAAACTATCA
TTGCTCCTATCGATGCGAACCCTCaagaatcaaaaatgaaaaaggaagaT
ATGGTTTGTAAAAATGTGACAGGGCAGAATAGTGGTAAGATTTCTTTGTC
AGGAAACTGGTTTTaagttttcataaaaatttttatttttataacatATT
CATAAATTTCGATCAAAATACGTCGGTTTGCATTCAAGAAAATAAACGAC
TCAAACGGAAAAAGCCATTTCAGCGAAAAcaaaatgttatcaaaattttg
ttaaattgtCAAAAGCTTCTCCTACGGCGCCCTAAAAATTCAATCGAGAG
TAATTTCCTTATCTGTTTGTCAGTTTATTGTTTCTTTTGCTCGAAAAGTA
TTTTCCCTACAATACTCGCTTTAGAATTTCTTTTATCTCTTATTTTCACC
CTTAGAAACAGAGGATGACTTATTAAAGAATTTCGAAAGTCATTACTCGT
GTCCTATCTGCTTGGACATTGCTGACGATGCAGTGGAGTGTACGGATTGC
TTTAAGATTTATTGCGGTGAATGTACACAAGGAATAAACACGTGTCCCAG
CTGTCGCTGCACACCTTCTGCATGGCAACCAAGTCGTAATGCTCGACAAT
TCATTGGTAATTTAAAAACCGATTGTCCTAATGATGGATGCAAGGAGAAG
CCAACGCGGTCGAATCTGCAAGTTCATTTAGAGAAATGCGAATGGTCTTT
GATTGCTTGCTCAAGCGATGGTTGTGATAAGAGAATCAAGCAGAGTGGAA
TGGTGGAGCATTTGCTTCAATGTGGTCATTGTTTGATAAAGTGTTCGTCT
AAAGGTTGTTTAGAACTGGTCAAAAGGAAGGATGTGGAGGACCACAAGGA
TCGATGCTTATTTACCAATATCAATTGTATGAATTGCAACGAAATGTTAG
TACGCAAAAATGAAAGTATCCATTTGAATATTTGTAAAGAGAAGATAATC
AATTGCATGTTTTGTGGTTTTTCAGACACCAGAATGAATGTGATGGTACA
TTCGGTGCGTGTTCATTACGAGAAGGTTGCACACCCTTTCGGTGAGATGT
TGGAATCTATCAGAGTGCATCGATCGGTGTCGAATCATTATCCTTCGTAT
TTGCCGCCTTGAAAACGTCGTATGATAACGTATTTTaagtaaatttttga
aagatttattttgaaatttcaatctgGTCATTTCCAATCCAGTCTGTTTA
ATGGTGATTTACAAAATAATTTGTCTTGGGATTTGTTCATTAAAtgaaca
gaaaaataaaaatgggggttggaaattgtaactacgaaaacccaaaaata
aggtaaatataggctaaaatcaggctatttagagcaaaataagggacctt
ctctttggAGTGTTTAGGCACACTCATGGGTCCAAAGTGGCTATCATTTC
CAAAGTTTTCTAGCTAAAACGTGGAAGGAAGGAAGTATTTTGGAAAACGG
AATATAATCAAATGGCGAGGAATAGATTTTGGCTAAAATAAGTCACAGGA
AACAAAGTTTGATAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017038XLOC_017038Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029816-exon-sc0000771-1491911889:135814..136070TCONS_00029816-exon-sc0000771-1491911889:135814..136070Clytia hemisphaericaexon
TCONS_00029816-exon-sc0000771-1510915933:135814..136070TCONS_00029816-exon-sc0000771-1510915933:135814..136070Clytia hemisphaericaexon
TCONS_00029816-exon-sc0000771-1575043694:135814..136070TCONS_00029816-exon-sc0000771-1575043694:135814..136070Clytia hemisphaericaexon
TCONS_00029816-exon-sc0000771-1491911889:136461..136622TCONS_00029816-exon-sc0000771-1491911889:136461..136622Clytia hemisphaericaexon
TCONS_00029816-exon-sc0000771-1510915933:136461..136622TCONS_00029816-exon-sc0000771-1510915933:136461..136622Clytia hemisphaericaexon
TCONS_00029816-exon-sc0000771-1575043694:136461..136622TCONS_00029816-exon-sc0000771-1575043694:136461..136622Clytia hemisphaericaexon
TCONS_00029816-exon-sc0000771-1491911889:137328..137636TCONS_00029816-exon-sc0000771-1491911889:137328..137636Clytia hemisphaericaexon
TCONS_00029816-exon-sc0000771-1510915933:137328..137636TCONS_00029816-exon-sc0000771-1510915933:137328..137636Clytia hemisphaericaexon
TCONS_00029816-exon-sc0000771-1575043694:137328..137636TCONS_00029816-exon-sc0000771-1575043694:137328..137636Clytia hemisphaericaexon
TCONS_00029816-exon-sc0000771-1491911889:138158..139447TCONS_00029816-exon-sc0000771-1491911889:138158..139447Clytia hemisphaericaexon
TCONS_00029816-exon-sc0000771-1510915933:138158..139447TCONS_00029816-exon-sc0000771-1510915933:138158..139447Clytia hemisphaericaexon
TCONS_00029816-exon-sc0000771-1575043694:138158..139447TCONS_00029816-exon-sc0000771-1575043694:138158..139447Clytia hemisphaericaexon
TCONS_00029816-exon-sc0000771-1491911889:139769..140881TCONS_00029816-exon-sc0000771-1491911889:139769..140881Clytia hemisphaericaexon
TCONS_00029816-exon-sc0000771-1510915933:139769..140881TCONS_00029816-exon-sc0000771-1510915933:139769..140881Clytia hemisphaericaexon
TCONS_00029816-exon-sc0000771-1575043694:139769..140881TCONS_00029816-exon-sc0000771-1575043694:139769..140881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000771supercontigsc0000771:135814..140881 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27683	0.828915	0.43307	0.339378	1.18673	0.458301	1.6315	1.25121	0.766011	1.62073	0.84829	0.622331	2.12544	1.43198	2.18634	2.13333	1.11501	1.03867	1.76277	2.39797	0.43686	0.672497	1.0225	1.43476	4.00407	3.90851	1.92844	1.68753	1.27309	0.849667
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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