TCONS_00029735 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029735
Unique NameTCONS_00029735
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029735 ID=TCONS_00029735|Name=TCONS_00029735|organism=Clytia hemisphaerica|type=transcript|length=2770bp
tgaaaaagtataaaattttcctgagttttttgaatatttttttacatatg
AAGAAAAATTCAAGCTAATTATTTACAAATCTGTCTattttaaaattaga
attttcaaaatcaagtcattaaaatatttttatttctgtAATTACTATAT
ACACGATGGttacaaaccaaaatttggtgattaTTCTGAACTCACGTACT
ATTTTTTGGAATAATTGTCTACGAGAATGTCCACATTTTACACCTAAGCC
TTATGGAATCTCATTGGGAATCTCATTTCGGTTCAATATATTGTCTTTTG
ATAGCTTTTTTTGCATTCTCTATACAATAGCTTCTGTCTTACggttgaaa
aaaaagataatcaatGAAGGACGTGCAAGTCATTTTAACAtcggtcaaaa
attgaattcagTAATATCTACATTTCCCGATCTTCTAATATTTTATACAT
ATCGAATCACAATGTGATGGACGTTCCTTGTAATGAATGCTTTATTCTCA
TTTCAGAGCACTCCAATACGGTCGTTGCTTCTTCGTACGGGTGAGAGTAG
ATCTTGTATTTTTCTATCTTTGATCTGGAGTTTTCTGGAGTTTCTGAACT
GTTTCTAAGTTGGACTTAGTCAGTTTTAGAGTTCaactttgatattttga
aatttgccaaatttgagTTCTGGGTGGGATTCGAGCCTACACATGAAAAG
TACCTTCGGCTCAGAAGCTCCAGATTTTTTTGAATAGCAAAAAATCTCCT
TTCGCCCGTACGTACGAAGGAGTCAGCACCCTCCAATACAAGCCCTCAAA
CGTGTTCGATCAAACTCTCGTAAAAATACTTTAAACGGTAGCCTTATCTT
TGGTATTCGCTTTGATTTGACATGGATCTTTGATACCCAATAAAAAGTCT
TTATAACAGTTCACAATCTTATCTTTAGGTTCTGTCACGTAATCAAAATA
ATGTTTATTGATCACCTTATCCAATATGACTTTTTTCCAGGCACTGTTTT
TATCTTGGTAAGCCAGCATTGATTTGGCATATTCGACAACAGCATCTGAA
ACTTTCTTCATACAGGAGTCACCAGAATCACATTTcataaactttttcaa
aagctcAGTAGCTTTATACGTTTtggttttcatttcattttttccttctt
cttcAAGCTGTATATCTTCTTTATAAGCCATAGCAGAGAAATACTCACTG
GGTAGatctttcttatttttcttgaagataaaaaacaactCAGCAACATA
ATCGCGTGCCTTGACTGTTTCCATTTTAGCCTGCTCGCTTAAACTctcac
cttggccaacatcgACTAAAATGTCTTTAGCAGCTTTTAAAGTTGAGTAA
GTACGCCATAGATATTTACTTGATTCTGCAATGCATTGTGGTATTGATTG
TGGTTTCTTGGCAAGGCATTTATCCATTGATTCTTGGGTATGCCCAAAAT
TTTCAATAGCTGATGAAATGTAATCATTGAGAGATATCTTGTTGATCATT
TCTTTGTGTTTCATCTGTGAGGCGACATTGATGGATCTGATAGCACCAAA
ACTGTGGTATGATTTAGCTGCTTTAAGATGATTTCGAATCTCcataaaaa
tttcatcaaacatTTTAGCAGATTGGTCATTCCTCTGATCATCTGTTTTG
GCTGTTATGATTTCAGCGATTTTATTAAATGAGGTGTAAACTTGTGCGGC
GTTTTTAGTTGAGATTCCttgaagaaaacttttaaaattttcttgaagAT
CATCTACAGATAAGCTGATCAAATCGTTTATAAATCTGGAGCTGACAGAT
GAATCTTGTCTAAAAACAGGAATCATTGCTAAAACTAAGTCAAACCATTT
CATATAATAGCTCTTATCTAAAGAAGCTAAAATCTTTTTCTGTTTCTCAA
GTTTCGCAACTTGTCCTTTATCAGAGGGATTTGTGGGCAGGAAGATATCA
GGTGCTGCAATCTCTAATGCATCTGAACGGATAAgtccatcaagcatggt
ttcgGCATTACACGGCTTCTGTGCCCCCTTAACATCACATCTTTGAGTCG
CAATATATTTGTTATATTGAAGGACCGCTGTACCGGCTTCTTTTCCAACC
AAGCCAAATTCAACGTCTGAGGTACACATTACGGGTCCCGTTTGTACGGG
ATAACACATCTCCAAAGGCTTGTATATTTTATCATCAGGATCAACCTTAC
AAAGGCTTACATCACTAGTCGTAATATGACGTAATAGGTAAGTGTAATAT
GCATAGCGAGCACCAACAGCATATAATAGATTTTTACATACTACTAAAAT
GCCTTTATCAGTTTTCATTTTATCATCCTTGAGCAAGGTATTCCATTCAC
CAGCTTTCGTGAAAAAGGTTTCAATCACTTTAGCGTAAAGTCCAAAATTC
TTTGTCAAAGGACTAAATTCTTCGTATGGTTTTTCAACAAAGGTTGGTAA
ATTTTTGAATAAGACataattttctttatctttgtCCTCTGGGTTTGCTT
CCATTTGGAAATCAAATAATTGGATAATACATTTCTTGAAGAAATCCAGA
AACGGATCTCGAGCCTCTGTGTATGGTTtgtctttgtatttttgtagcAT
ATCATTAGCAAGCATGTCACATTCTTCTTTGGCCATGTCTTTACTGGCGT
CTCCTGCTCGACGCTCGACGTGATGGTGCCGCATACATGATACTTGGCAG
ACTGTGATGGATAAAATGATAGCGGCTATGAAGAGTGTCGATGATTTCGA
AATAGCCATTGCTtgtttct
Run BLAST on NCBI

transcript from alignment at sc0000768:9335..13577-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029735 ID=TCONS_00029735|Name=TCONS_00029735|organism=Clytia hemisphaerica|type=transcript|length=4243bp|location=Sequence derived from alignment at sc0000768:9335..13577- (Clytia hemisphaerica)
TGAAAAAGTATAAAATTTTCCTGAGTTTTTTGAATATTTTTTTACATATG
AAGAAAAATTCAAGCTAATTATTTACAAATCTGTCTATTTTAAAATTAGA
ATTTTCAAAATCAAGTCATTAAAATATTTTTATTTCTGTAATTACTATAT
ACACGATGGTTACAAACCAAAATTTGGTGATTATTCTGAACTCACGTACT
ATTTTTTGGAATAATTGTCTACGAGAATGTCCACATTTTACACCTAAGCC
TTATGGAATCTCATTGGGAATCTCATTTCGGTTCAATATATTGTCTTTTG
ATAGCTTTTTTTGCATTCTCTATACAATAGCTTCTGTCTTACGGTTGAAA
AAAAAGATAATCAATGAAGGACGTGCAAGTCATTTTAACATCGGTCAAAA
ATTGAATTCAGTAATATCTACATTTCCCGATCTTCTAATATTTTATACAT
ATCGAATCACAATGTGATGGACGTTCCTTGTAATGAATGCTTTATTCTCA
TTTCAGAGCACTCCAATACGGTCGTTGCTTCTTCGTACGGGTGAGAGTAG
ATCTTGTATTTTTCTATCTTTGATCTGGAGTTTTCTGGAGTTTCTGAACT
GTTTCTAAGTTGGACTTAGTCAGTTTTAGAGTTCAACTTTGATATTTTGA
AATTTGCCAAATTTGAGTTCTGGGTGGGATTCGAGCCTACACATGAAAAG
TACCTTCGGCTCAGAAGCTCCAGATTTTTTTGAATAGCAAAAAATCTCCT
TTCGCCCGTACGTACGAAGGAGTCAGCACCCTCCAATACAAGCCCTCAAA
CGTGTTCGATCAAACTCTCGTAAAAATACTTTAAACGGTAGCCTTATCTT
TGGTATTCGCTTTGATTTGACATGGATCTTTGATACCCAATAAAAAGTCT
TTATAACAGTTCACAATCTTATCTTTAGGTTCTGTCACGTAATCAAAATA
ATGTTTATTGATCACCTTATCCAATATGACTTTTTTCCAGGCACTGTTTT
TATCTTGGTAAGCCAGCATTGATTTGGCATATTCGACAACAGCATCTGAA
ACTTTCTTCATACAGGAGTCACCAGAATCACATTTCATAAACTTTTTCAA
AAGCTCAGTAGCTTTATACGTTTTGGTTTTCATTTCATTTTTTCCTTCTT
CTTCAAGCTGTATATCTTCTTTATAAGCCATAGCAGAGAAATACTCACTG
GGTAGATCTTTCTTATTTTTCTTGAAGATAAAAAACAACTCAGCAACATA
ATCGCGTGCCTTGACTGTTTCCATTTTAGCCTGCTCGCTTAAACTCTCAC
CTTGGCCAACATCGACTAAAATGTCTTTAGCAGCTTTTAAAGTTGAGTAA
GTACGCCATAGATATTTACTTGATTCTGCAATGCATTGTGGTATTGATTG
TGGTTTCTTGGCAAGGCATTTATCCATTGATTCTTGGGTATGCCCAAAAT
TTTCAATAGCTGATGAAATGTAATCATTGAGAGATATCTTGTTGATCATT
TCTTTGTGTTTCATCTGTGAGGCGACATTGATGGATCTGATAGCACCAAA
ACTGTGGTATGATTTAGCTGCTTTAAGATGATTTCGAATCTCCATAAAAA
TTTCATCAAACATTTTAGCAGATTGGTCATTCCTCTGATCATCTGTTTTG
GCTGTTATGATTTCAGCGATTTTATTAAATGAGGTGTAAACTTGTGCGGC
GTTTTTAGTTGAGATTCCTTGAAGAAAACTTTTAAAATTTTCTTGAAGAT
CATCTACAGATAAGCTGATCAAATCGTTTATAAATCTGGAGCTGACAGAT
GAATCTTGTCTAAAAACAGGAATCATTGCTAAAACTAAGTCAAACCATTT
CATATAATAGCTCTTATCTAAAGAAGCTAAAATCTTTTTCTGTTTCTCAA
GTTTCGCAACTTGTCCTTTATCAGAGGGATTTGTGGGCAGGAAGATATCA
GGTGCTGCAATCTCTAATGCATCTGAACGGATAAGTCCATCAAGCATGGT
TTCGGCATTACACGGCTTCTGTGCCCCCTTAACATCACATCTTTGAGTCG
CAATATATTTGTTATATTGAAGGACCGCTGTACCGGCTTCTTTTCCAACC
AAGCCAAATTCAACGTCTGAGGTACACATTACGGGTCCCGTTTGTACGGG
ATAACACATCTCCAAAGGCTTGTATATTTTATCATCAGGATCAACCTTAC
AAAGGCTTACATCACTAGTCGTAATATGACGTAATAGGTAAGTGTAATAT
GCATAGCGAGCACCAACAGCATATAATAGATTTTTACATACTACTAAAAT
GCCTTTATCAGTTTTCATTTTATCATCCTTGAGCAAGGTATTCCATTCAC
CAGCTTTCGTGAAAAAGGTTTCAATCACTTTAGCGTAAAGTCCAAAATTC
TTTGTCAAAGGACTAAATTCTTCGTATGGTTTTTCAACAAAGGTTGGTAA
ATTTTTGAATAAGACATAATTTTCTTTATCTTTGTCCTCTGGGTTTGCTT
CCATTTGGAAATCAAATAATTGGATAATACATTTCTTGAAGAAATCCAGA
AACGGATCTCGAGCCTCTGTGTATGGTTTGTCTTTGTATTTTTGTAGCAT
ATCATTAGCAATCATATCACATTCTTCTTTGGCCATGTCTTTACTTGCGT
CTCCTGCTCGACGCTCGACGTGATGGTGCCGCATACATGATACTTGGCAG
ACTGTGATGGATAAAATGATAGCGGCTACGAAGAGTGTCGATGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCTCGTCCCAGTCTTC
AAAAAGCTTTAAAACTCGATATTTCGGCTTCAGATTTTTGTAGAAATAAA
AGTGACCCCATTTTCGAACGCAGAATTTTCCCCTCCTTCCAATAAAATTG
GTTTCAAAATTCAAAAACAACTTTTTAGTTTCGTGTTTTTCAAAAAACTG
CCAAAAAAGGGACTGGAAACGAGTTTTGAAAATTTTCAAATTTTGAATTT
TTTTTGGAAAATCATAACATTTATGAATATCCATTGGTTTGGCAACATAA
AAACAATATATAAGCTAAATTAAGGCTAGTGGGAGAATTTTGACCATATT
TTGCCGCCGTGCTGGGTTTGCTTCCATTTGGAAGTCAAATAATTGGATGA
TACATTTCTTAAAGAAATCCAGAAACGGATCTCGAGCTTCTGTGTACGGT
TTGTCTTTGTATTTCTGTAACATATCATTAGCAAGCATGTCACATTCTTC
TTTGGCCATGTCTTTACTGGCGTCTCCTGCTCGACGCTCGACGTGATGGT
GCCGCATACATGATACTTGGCAGACTGTGATGGATAAAATGATAGCGGCT
ATGAAGAGTGTCGATGATTTCGAAATAGCCATTGCTTGTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016987XLOC_016987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029735-exon-sc0000768-1575043694:10980..13577TCONS_00029735-exon-sc0000768-1575043694:10980..13577Clytia hemisphaericaexon
TCONS_00029735-exon-sc0000768-1575043694:9335..9506TCONS_00029735-exon-sc0000768-1575043694:9335..9506Clytia hemisphaericaexon
TCONS_00029735-exon-sc0000768-1510915933:10980..13577TCONS_00029735-exon-sc0000768-1510915933:10980..13577Clytia hemisphaericaexon
TCONS_00029735-exon-sc0000768-1510915933:9335..9506TCONS_00029735-exon-sc0000768-1510915933:9335..9506Clytia hemisphaericaexon
TCONS_00029735-exon-sc0000768-1491911889:10980..13577TCONS_00029735-exon-sc0000768-1491911889:10980..13577Clytia hemisphaericaexon
TCONS_00029735-exon-sc0000768-1491911889:9335..9506TCONS_00029735-exon-sc0000768-1491911889:9335..9506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000768supercontigsc0000768:9335..13577 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.041948	0.0161464	0.0313829	0	0	0.103337	0.00105199	0.588794	0.73704	0.375361	0.000113305	4.12305	4.115	5.45484	2.59099	8.18158	3.0628	3.00883	0.0484502	0.0616736	3.07479	4.0833	1.54568	1.31727	0.824345	0.380228	1.29928	1.28167	0.0461391	0.015934
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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