TCONS_00029652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029652
Unique NameTCONS_00029652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2142

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029652 ID=TCONS_00029652|Name=TCONS_00029652|organism=Clytia hemisphaerica|type=transcript|length=2142bp
CTTCATTCGAAGAGGTTTGACCTGAGGAGAAGTACAGTTGTTACTGTTGT
AAAACAGTTTTTAGCATAAAATactttttgagaaaacaaaGATTAACTGA
AGAGGTTGAATCCAAAAAGGTTTAAATTTCGAGAAAGCTTCCAGGGTTCC
AAAGgttGATTATTTGTTGTTCTTCAAATTGGGACATGTGGGATATTGGT
TAAGATTCCTGTGTACTGGGTGTATTTCCTCCAGTTCATAAACCATGAGT
GTTGCAAAAACATTCATACGAAAGTCACTTTGTGAAGAAATTAAGTCAAT
CCTACAAACATACCCTGATGATGGACAAATATTTAAAGAAATTATACAAA
ATGCAGAGGACGCAGGTGCTACAGAAGTTGTCTTTATTTACGATAAAAAT
GAATTACACACATCAAAGGAATATCACTGTCCAAAACTTACAGATTTTCA
GggACCTTCGTTATACTCATATAACAATGCAAAGTTTACGGATTCTGATT
GGGAAGGCATTCTGAAACTTGGTACTTCAAACAAAGTCAAAGATGCTCTA
AAAGTTGGACGTTTTGGTTTAGGATTTAAATCTGTCTTTCACTTAACAGA
CCTTCCGGTTGTGATAAGCGATGGTGTCACTGTATTGATGGACCCAATGA
AAAAGGTTTTCAACTCAGAGGTTATTGAGTATGATATGACTAAGACTGAG
AACATTGCACTTGTCCAAAACAAAGGTGATTTTGAACCGTTCAAAAGACT
TCCAAAGAAGTATTGGGATGTTGGAGTATCAAATGGATCTTTGTTTAGAT
TCCCACTGAGGAAAACAGAATCAGAGCTTTCTACGAGATGTTATAGCGAT
GAAATGAGATTTCAGAAACTGATCGACAAATTTCTAGATGAAGCATTTCT
atcattgatatttttaaagaatatcaaaacaatgaaattttttataattg
atAATGGTAGCAAAGAAGTTGAAGAAATCTATTCACTTGATTGTAACAAC
ACAGTTGAGACAAAACCATTCACTGATCAAATCAAGCAAAATGTCAagga
aaaacaatttgaaaaaacagaaaaactaAACCGACACCTAAAACTTAACC
AAATGTGGAAAGGAAACTTACGGTCTTACTCGTACGCTATCAGTGAACAC
TTTGGCTATTCCGGTAGTGATGATGATTTTAAAGCAATGATGCATGATGA
GGAACTGTCATACATACCTTTATTATCTGTAGCTTTGCCTCTTGATGATA
GTGACCCTGGTGGGCATGTATTTTCTGCTTTGCCACTCCCGTTACATACA
CCAAAAATGACGGGTATGCCTGTTCACATCAATGGGTTTTTTGCCCTGCT
CCAGGATCGTAAAGATTTGAAATGGAAAACTTTGACAGAGGGAGGTACCA
GTAACGACAAAACTGTCAACTGGAACAGCTGCTTAATAACAGAACTTGCT
CCTGTTGTCTATGCTAACTTAATGACATTTCTAATTACACAGTTCAGCTC
TGCAGAAGTGTACAAAGCTTGGCCCTGCATTGATGCTGTCGACCAGAGAT
ggcacattttcttggaaaagttttacaagaacatGCTCTCGattaaattt
atttatcttGAAAATGTCGAAGACTTTGCACTTCTAACAAATGTACACTT
AATAAACGCTGAAAGCTTTTCATCATGTCAGCAAAAGTCCATCATTTTAG
ACTTTACACTAGCTAACCTTAAAGTTGCCGAAGTACCCATTTCAATACTT
AAGTGCTTTGAGAGACACAATTTATTATGGTTAGACTCTACAACATTACT
CAAGCTGTTAATGCAGAATCAACAACAATATCATACATTACCAATTGATG
ATAAAGCCATGTTATTGGAGTTTGCAATCAAATCCACAAATGATTGGCAG
CAAATTTATCAAACACCATTGTTACCGTTAGCAAATGGGAGCCACATTTC
ATTATCAAGTACTTCCACTTACTTAGTTGAGAATGAAGATTTCATGAAAA
TCCTTCCCAGTAAAGAACATCTCTTGGATTTTAACATCTTCAAACAATCG
AAAAGCTTATTGGATTCCTTCAAAGAATGGATATGTGATTGTAAGACCAA
ATTTATTGACTTTTTAACTGTTTGTTTCTATCTCCTTTTAGC
Run BLAST on NCBI

transcript from alignment at sc0000762:109479..119083-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029652 ID=TCONS_00029652|Name=TCONS_00029652|organism=Clytia hemisphaerica|type=transcript|length=9605bp|location=Sequence derived from alignment at sc0000762:109479..119083- (Clytia hemisphaerica)
CTTCATTCGAAGAGGTTTGACCTGAGGAGAAGTACAGTTGTTACTGTTGT
AAAACAGTTTTTAGCATAAAATACTTTTTGAGAAAACAAAGATTAACTGA
AGAGGTTGAATCCAAAAAGGTTTAAATTTCGAGAAAGCTTCCAGGGTTCC
AAAGGTATGCAAGCATTTTTTTTTTTTTTTTTGGCATTCTACTTGCCTGC
TAGCTGCTTGACCTCAGTATTTTCCTTTCTCCCGCAACACACCTAGATAT
ACAGCCCAAGATATATAGATTACCTATGAGATTTACAGGGCTTGACCTTG
ATAATCTGATTTGTGTCGTCAAACAGTAAGGGATTTCCTCTATTTTTGCG
ATTACAAGTAAACAAGTAAAAATGTGGATAAATGGACTCTTCAATTTTCA
GATAAAAAAAGCACTCGAAAATCCAGTCAATTTTTGCAAAGTGCTTTGAA
AATTCTGCTCAATTTTTTATTTGAACTCTTGGAAATGCCACATATTTTGT
CAAAATTTTGAAAAAAGAATCGGAAATTCCAGATTGTGAAATCCAGGAGT
TTCAATTGCTTTTGTATTGGAAATCCAGGAATTTCAAAAAAAAATTCCCC
CTGTAATGGACTTTAACTGGAAAAGCCCAATGATGCTGGTCAGAAACATA
ATTCAGACCATGTTCAGATATTACGGTTTTGTATCACTCCAGAATCAGTG
TGGCTCGAATCCTTCAGATCTTTGGTTAGAAAAAGCTATACCTGTTTACT
TTTTTCTTGCAAGATTCAACAAGCCAACCAACAAAATTACCACTGACATC
TGAAAATTCACACAACCTTTCCACAGTAGACACTTCTAAATTATCTTCCA
TTATGAAGATGTTCCGAAATTAACCAATCGGGTTTACAATCGGAATTCCT
ATGGGAGTTAGCAAGTCGGGAAATGTAAAGTTACTTACAGTAATAAGAAA
ATACTGTTTTTCCGTGGGTTAAACATATAAAAGAAAATTGGAACAGTTTA
TCTTTTCTTCATTACATATTTAAGTTTCTGTTATCGAAATTCTAGAAATG
CAGACCAATTTGTAGACCATATTAGAAAATGTTTACATATTTCGCAAAAT
AAACACTTACAAAAAGATATTACTTACTATTTTTACCCCCACTTTTTAAA
CAGCGTCTTCTGTGCTCAAGTGAGTTACGGCATGTCCAAGGTAAAAGTGA
ACCTGTTCCACTCACTTTCAAAATGTCAAACATAGCTGGAAAGAAGTGCC
TTGTGATGTAGATCAACGTGATAAGGTGTATGAAAAATTTAAGTTGAGCC
TATAAGAAGTTATAGCCCAAAAACCTGTATTATGACGTCATAAACATTAC
GTAACATTACGTCACGAAACTTAAAATTTAAATAACTCATAAACTATTAA
TGATATCAATATGAAATTTTGACAGAACAAATATATCGTTATTCTCAAAA
TCTCCTGAAAAATGATGACGTCAGCATTTTTAAGCCATTTTCGATTTTTG
GCTGTAAAAAATCACGTCATCATTTTTTTCAAAATATTTTTAACTTAGAA
ATTTTTTTACATCAATATCTATTTGTGGTCAAAATTTGACGTTTATATGA
CTTTTAGTTCACGAGATATTAAAATTTTTAGTTTTATGACGTAATGTTAT
GTTATGTTTATGACGTCATAATACAGGTTTTTGGGCTATAACTTCTTATA
GCCTCAACTTAAATTTTTCATACACCTATCACGTTGATCTACATCAAAAG
GCACTTCTTTCCAGCTATGTTTGACATTTTGAAAGTGAGTGGAACTGGTT
CACTTTTTCTTTGGACATGCCGTAACTCACTTGAGTGGGCGGTATATCAG
GCAGAGACAAAACGCCCTCATCGTAAGATTCTCGGGTCGTCTTATTGTTT
GTTCCTTTTGTCAAGTCTGTCGGTCCTATTGTTCATGCTTCCATACACGA
TGACTTCAATGTTTGGTGGCATACCTGAAAATAAAAACAAAAAGATTATT
ATTATTTCTGCATAAATTACGCTACCTTACGTTATCATAAAATTATACAA
AACGAAAGCGAGTCTAGGCCGCCCGTCTAGAGAGCACTAGACCTAATATT
TTTTCTATCGCAGCCTTCAGGGGAAAACGAAAGTGATCAAAATTCTTCGA
AGGAAGAACTTGCCAAAAAAAAACCCTAGACAAAAAATGTCTTTCGAGGT
TGGGAATGGATCCTGCAAAGATGAAAAAAATTTGACTAGGGTTTTTTTTG
GCAAACCCAAAAACTCTAATTTTTTTCTTCCCTCAAGCTAAATAGGTTAC
GGATTTTGCAATCGAGGCAAAAATTAGCAAAAAGCTGTTGTTTTCCGTAA
ATCTGAGAATCTCGATAAGATCCTCACTGAGAATGATATATGTTACAGAT
AAGACTGCTTACAGAACATTTTGGAGCAATGAAACCAGCAATTCAATTTC
GGTGAAAATGGTGGAGTGAAACTGTTTCGATCTGTTTTGCTTTGTAAAGT
CTTCTTTTTTGACGTTTTGAATTTTGACATTCAGACAGTGTTTTAGAACT
TTTCATTTTGAAGCGATACCATAACGTCTGAACAGTCAGTCTGTCTTCAA
AAACCCTTTAGCCCCAAGCTTTTTTGATTTTTTTAGCCCTAGGATGGGGG
GGTAGAATCTACCACCCTCTATCTTTTTTTATCTAGAAGAGCTATGGTCG
TAAAAATTGGTACAGATATTCTCCATCATGAAAAAAACTTCCAGGAAGAA
AAAACAATTGATGAAGTCATTCAAAAAGTGCGATGCCTTCATCACGAAAT
TTTACCCTGTTGGAAAAAAACCCAAATGTATTGTTCATCATTTTCAAATT
TTTTTGTATTTTTTTTTTAATTCATATTGTCAATACTTATCATGTGTCAA
AATTTAAATATGATTGGATAAATATTTCAGAAGTTAACAGCATTTTAGAA
TTTAGAGTTTTAAGCTATTTTTGCTGGGTTTTATGTCACGCTTCATAATA
AAGTCATAAAACCTGATCTAGAGAACCTATGACCCTAAAAAATTTCATAA
AAGTACTCTTCATAAGATTTTACGAAAAGTCAGAAAGTTTAAATCGTTTA
AAAAAATGTTCTCCAAGATATACACAAAAGTACACCAGCGTAGTAGATTC
TACACAATAGGGTTAAAAAAAGTTTTTGATTAGTTTGCGTACCTTACGGT
TATGTCATATTTCCACTTTTATCAAATGTGGTACCCTAGCACTGAAACGT
AGCCAAGCTTGCCATTTTTTCATAGCACAATACTTTAATGTCAAAAAATT
TAGTGTCCACAAAATTATGTGATTTTCAGGAAAGGCCCTTACAGTTACAT
CAATATGCCTTCTTACCTGTCTTTAAAAATATAAATAAAAGTATTCACGG
AAAAGGACGCAAAAAAAAAAGACATAAGTGTGAGAACAGAGTAATCAAAC
TCGTTAGAAAAAGTACCATTAGAAGTCATAAAAAATCAACCTGANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTTTTAAAGATTT
GCCGGGTTGGAAAAGTATGAATTTCTTTGTACATATTTTACCTACCCCAA
ATATTTAGGAGGCTGAGTTTTAAACGAATCGTCAAGTTCAAACGAACGAT
AAATGTATCAAGGTCTGTTTTATTTACCCCCTGGTGACTTAACAAAAGAG
ACTTAACTCGATGTTACAATCCAATTATTGAAAGTTTGTCTCGGCCTTTT
TATAATGAGCGAGACATACGTTCTCTGATTACGCAATTTTCATATTGACA
TTTTCGAGGCATTTTGATGTAACTGCCTTAATTCTCGGGTAAGTTATGGT
ATGTCTTAAAATTACCATAATTTTTAGATCGCATTAGCCGACAGAAAACG
ACCAAACAAATGACTGAACATGAAGGGTACTATAATGTAGTTTCTAACCT
GATGTGTAACCCAATTGGTTTTTTGCCGATTTTCGTGAAAAACCGCAAAA
ACTGATTATGACGCCATAATTGATGACTTCATAGAAACTAAAAACTGAAT
TTTTCAAGGGTTGTTTATCCAATTGTCTTCAAACTTTCACCGAAGATGTA
TCTCAGTAAAGTCAATCATTTGAAAATATATTTTTTCCGAAGTTTAGATT
GTGTCAGCAAAAGATTGGATTTTTCTTTCTTTACTAATTTTTGCTGACGT
CATGAAAATTTCGAAAAATTTCTTTTTTCAAATGATCAACTTTCGCTNTT
TTTTTCCGAAATTTTGATTGTGTCAGCAAAAGATTGGATTTTTCTTTCTT
TACTAATTTTTGCTGACGTCATGAAAATTTCGAAAAATTTCTTTTTTCAA
ATGATCAACTTTCGCTAGATACATCTTTGGTCAAAGTTTGAAGATGATTG
GAAAAACCATTCTTGAGAAATGAAATTTTTAGTTTTTATGTTAGTTGAAA
AAAACCTTTCAAACTGTGAAAACAAAAAATATTTATGTAAAAGTAGATAC
TTTTCTTTTAGAGTAAACAATTATAGAAAAATGAATCTTTTTGAAATTTT
AGGTTGATTATTTGTTGTTCTTCAAATTGGGACATGTGGGATATTGGTTA
AGATTCCTGTGTACTGGGTGTATTTCCTCCAGTTCATAAACCATGAGTGT
TGGTATGTAAATCATATTGTTTATCATCTTCTTTATTGTTGCCTTTTCTA
TTTTGATATTTTCGTAACTTTTTTCATTTTTAAATGAATCGTAAATTTTT
AGATCTTGCAATTTAAAAACTTACTTATTTCAGCATTTGTTATGTTTCTT
TTATGTCGAGGATAAATTTCTTGAGTTCTTTAAAGTCTTGAAAAATCAAA
CTTATTCTATTGGAGAGAGGAACAGTGGACTTTGACACATCATTTATTAA
ATTAGATCAATTAGATTAGAATTTACATTGAAAAGAAAAATAACTCAATT
TCTGACTGCTCAAGAACGTCAAAATTAGGAGGTCAGATGCATTAAATGAG
AAGAATAATCTGTAGGAGCTATTTTACCAATTATAAGAAATGATTGATAA
AGTTTGATTTGAGACCAATGTCATGGATGCCGGATGTTTATTATTTTCAG
CAAAAACATTCATACGAAAGTCACTTTGTGAAGAAATTAAGTCAATCCTA
CAAACATACCCTGATGATGGACAAATATTTAAAGTAAGTAAATCTATTTC
TCTAACATTTGTTATCAATCCTGATTAGTAAAATGTTTTCACTTGTAAAT
TATATGTATTTTTTTGTACTTTTAGAAATTTTAATTTTTAAACTTATTTA
CAGGAAATTATACAAAATGCAGAGGACGCAGGTGCTACAGAAGTTGTCTT
TATTTACGATAAAAATGAATTACACACATCAAAGGAATATCACTGTCCAA
AACTTACAGATTTTCAGGTGAGTTTAGATTTTTGTAATTTTTTTGTAAAA
TTTGAAGTATATAAGACAATTTTAAAGATTTAATGTTAAATGTTTTCAAT
GTCCTTTAAATAGTTTTTTCTTAAAAAATTGTTTTTATTTGAATGTTATT
AACTTGTTAAAGCAGGCTGCAACTAGAGTTTGAGATCAGACATCAGTAAA
GTGTAGAGAAAAGAGGAGGTTATACAGAGTGTCCTGTAAATAAGTCATGC
GTCAAAACATGACTACAAGTAGAAGGATTTTTGTGTATATTATGTCATAA
ACTAGTATTCACGTTAGGGTTTTTATTACACATAATGTTTAGNGTCAATT
TATTAAATTAGATCAGTTAGATTAGAATTTACATTGAAAAGAAAAATAAC
TCAATTTCTGACTGCTCAAGAACGTCAAAATTAGGAGGTCAGATGCATTA
AATGAGAAGAATAATCTGTAGGAGCTATTTTACCAATTATAAGAAATGAT
TGATAAAGTTTGATTTGAGACCAATGTCATGGATGCCGGATGTTTATTAT
TTTCAGCAAAAACATTCATACGAAAGTCACTTTGTGAAGAAATTAAGTCA
ATCCTACAAACATACCCTGATGATGGACAAATATTTAAAGTAAGTAAATC
TATTTCTCTAACATTTGTTATCAATCCTGATTAGTAAAATGTTTTCACTT
GTAAATTATATGTATTTTTTTGTACTTTTAGAAATTTTAATTTTTAAACT
TATTTACAGGAAATTATACAAAATGCAGAGGACGCAGGTGCTACAGAAGT
TGTCTTTATTTACGATAAAAATGAATTACACACATCAAAGGAATATCACT
GTCCAAAACTTACAGATTTTCAGGTGAGTTTAGATTTTTGTAATTTTTTT
GTAAAATTTGAAGTATATAAGACAATTTTAAAGATTGAATGTTAGATGTT
TTCAATGTCCTTTAAATAGTTTTTTCTTAAAAAATTGTTTTTATTTGAAT
GTTATTGACTTGTTAAAGCAGGCTGCAACTAGAGTTTGAGATCAGACATC
AGTAAAGTGTAGAGAAAAAAGGAGGTTATACAGAGTGTCCTGTAAATAAG
TCATGTGTCAAAACATGACTACAAGTAGAAGGATTTTTGTGTATATTATG
TCATAAACTAGTATTCACGTTAGGGTTTTTATTACACATAATGTTTAGTA
TGTTAATCGATTTCATAGTTTCAAAAAAATGTTTTATTACACAATTGATC
TTTCAATAGACCTTTTTTCAAAGAGGCCACCCTGTTGAATAATTATGTAG
TCCAGCAGAAAAACAATGATAAAACCATGCATAATTATTACAATATGCAT
GATNGATTTGAGACCAATGTCATGGATGCCGGATGTTTATTATTTTCAGC
AAAAACATTCATACGAAAGTCACTTTGTGAAGAAATTAAGTCAATCCTAC
AAACATACCCTGATGATGGACAAATATTTAAAGTAAGTAAATCTATTTCT
CTAACATTTGTTATCAATCCTGATTAGTAAAATGTTTTCACTTGTAAATT
ATATGTATTTTTTTGTACTTTTAGAAATTTTAATTTTTAAACTTATTTAC
AGGAAATTATACAAAATGCAGAGGACGCAGGTGCTACAGAAGTTGTCTTT
ATTTACGATAAAAATGAATTACACACATCAAAGGAATATCACNATGTATG
TTTATAAGTTTATTGGGTTTTTAGTTTAATATTGTAGCCATTAAAGTGTT
AATTACCATGTTGCGTTAAAGAGAGAAACAACGTACACACACAAAAACTT
TTCTACTTGTAGTTGTGTTCTGAAACAGGGGTTTTTTTGGGGACACCCTG
CACATCAAACCTGATACTCTAACTCAGAGTTTAATATTTCCAAATTTCCT
TTTTAGACTCTGAAACTTATTCTTTACATTTTCAAGAACTGGTGTCTAAT
GGTACTTTCGAGGTTCCTTGAACTTAACAATTTTGATTTTTAGTTTGGTG
AAGGAATTTAAACAAAGTTGTATTTTTTAGGGACCTTCGTTATACTCATA
TAACAATGCAAAGTTTACGGATTCTGATTGGGAAGGCATTCTGAAACTTG
GTACTTCAAACAAAGTCAAAGATGCTCTAAAAGTTGGACGTTTTGGTTTA
GGATTTAAATCTGTCTTTCACTTAACAGGTACAACATGGATCTTTATTTA
TTCTTTTACCTTTTTAGGGAATTAACGTTTTTTTAAATGGATTATCAGAT
TAGTAAGAGCTCTAAATTAAGCTGACCTTTTTTTGCAATTTCAAAACAAA
TATAATCATAATAACATGGCTATAAAGAAAAATCACTCCCACTTACTTGT
TTAGTTTTGATTGATTTTTGACATTTTCTCAGAATTTGTCATGTTTTTTT
TTGTCTATTTAGACCTTCCGGTTGTGATAAGCGATGGTGTCACTGTATTG
ATGGACCCAATGAAAAAGGTTTTCAACTCAGAGGTTATTGAGTATGATAT
GACTAAGACTGAGAACATTGCACTTGTCCAAAACAAAGGTGATTTTGAAC
CGTTCAAAAGACTTCCAAAGAAGTATTGGGATGTTGGAGTATCAAATGGA
TCTTTGTTTAGATTCCCACTGAGGAAAACAGAATCAGAGCTTTCTACGAG
ATGTTATAGCGATGAAATGAGATTTCAGAAACTGATCGACAAATTTCTAG
ATGAAGCATTTCTATCATTGATATTTTTAAAGAATATCAAAACAATGAAA
TTTTTTATAATTGATAATGGTAGCAAAGAAGTTGAAGAAATCTATTCACT
TGATTGTAACAACACAGTTGAGACAAAACCATTCACTGATCAAATCAAGC
AAAATGTCAAGGAAAAACAATTTGAAAAAACAGAAAAACTAAACCGACAC
CTAAAACTTAACCAAATGTGGAAAGGAAACTTACGGTCTTACTCGTACGC
TATCAGTGAACACTTTGGCTATTCCGGTAGTGATGATGATTTTAAAGCAA
TGATGCATGATGAGGAACTGTCATACATACCTTTATTATCTGTAGCTTTG
CCTCTTGATGATAGTGACCCTGGTGGGCATGTATTTTCTGCTTTGCCACT
CCCGTTACATACACCAAAAATGACGGGTATGCCTGTTCACATCAATGGGT
TTTTTGCCCTGCTCCAGGATCGTAAAGATTTGAAATGGAAAACTTTGACA
GAGGGAGGTACCAGTAACGACAAAACTGTCAACTGGAACAGCTGCTTAAT
AACAGAACTTGCTCCTGTTGTCTATGCTAACTTAATGACATTTCTAATTA
CACAGTTCAGCTCTGCAGAAGTGTACAAAGCTTGGCCCTGCATTGATGCT
GTCGACCAGAGATGGCACATTTTCTTGGAAAAGTTTTACAAGAACATGCT
CTCGATTAAATTTATTTATCTTGAAAATGTCGAAGACTTTGCACTTCTAA
CAAATGTACACTTAATAAACGCTGAAAGCTTTTCATCATGTCAGCAAAAG
TCCATCATTTTAGACTTTACACTAGCTAACCTTAAAGTTGCCGAAGTACC
CATTTCAATACTTAAGTGCTTTGAGAGACACAATTTATTATGGTTAGACT
CTACAACATTACTCAAGCTGTTAATGCAGAATCAACAACAATATCATACA
TTACCAATTGATGATAAAGCCATGTTATTGGAGTTTGCAATCAAATCCAC
AAATGATTGGCAGCAAATTTATCAAACACCATTGTTACCGTTAGCAAATG
GGAGCCACATTTCATTATCAAGTACTTCCACTTACTTAGTTGAGAATGAA
GATTTCATGAAAATCCTTCCCAGTAAAGAACATCTCTTGGATTTTAACAT
CTTCAAACAATCGAAAAGCTTATTGGATTCCTTCAAAGAATGGATATGTG
ATTGTAAGACCAAATTTATTGACTTTTTAACTGTTTGTTTCTATCTCCTT
TTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016945XLOC_016945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029652-exon-sc0000762-1575043694:118930..119083TCONS_00029652-exon-sc0000762-1575043694:118930..119083Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1575043694:114182..114281TCONS_00029652-exon-sc0000762-1575043694:114182..114281Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1575043694:112795..112877TCONS_00029652-exon-sc0000762-1575043694:112795..112877Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1575043694:112561..112674TCONS_00029652-exon-sc0000762-1575043694:112561..112674Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1575043694:111256..111403TCONS_00029652-exon-sc0000762-1575043694:111256..111403Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1575043694:109479..111021TCONS_00029652-exon-sc0000762-1575043694:109479..111021Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1510915933:118930..119083TCONS_00029652-exon-sc0000762-1510915933:118930..119083Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1510915933:114182..114281TCONS_00029652-exon-sc0000762-1510915933:114182..114281Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1510915933:112795..112877TCONS_00029652-exon-sc0000762-1510915933:112795..112877Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1510915933:112561..112674TCONS_00029652-exon-sc0000762-1510915933:112561..112674Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1510915933:111256..111403TCONS_00029652-exon-sc0000762-1510915933:111256..111403Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1510915933:109479..111021TCONS_00029652-exon-sc0000762-1510915933:109479..111021Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1491911889:118930..119083TCONS_00029652-exon-sc0000762-1491911889:118930..119083Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1491911889:114182..114281TCONS_00029652-exon-sc0000762-1491911889:114182..114281Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1491911889:112795..112877TCONS_00029652-exon-sc0000762-1491911889:112795..112877Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1491911889:112561..112674TCONS_00029652-exon-sc0000762-1491911889:112561..112674Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1491911889:111256..111403TCONS_00029652-exon-sc0000762-1491911889:111256..111403Clytia hemisphaericaexon
TCONS_00029652-exon-sc0000762-1491911889:109479..111021TCONS_00029652-exon-sc0000762-1491911889:109479..111021Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000762supercontigsc0000762:109479..119083 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0505751	0	0.0994853	0	0.000126722	0	0	0	0	0	0	0	0	0.453353	0	0	0	0	0	0	0	0	0	0	0.000102893	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00029652 vs. Swiss-Prot (Human)
Match: SACS (Sacsin OS=Homo sapiens GN=SACS PE=1 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 1.471e-62
Identity = 153/475 (32.21%), Postives = 236/475 (49.68%), Query Frame = 2 
Query:  278 LCEEIKSILQTYPDDGQIFKEIIQNAEDAGATEVVFIYDKNELHTSKEYHCPKLTDFQGPSLYSYNNAKFTDSDWEGILKLGTSNKVKDALKVGRFGLGFKSVFHLTDLPVVISDGVTVLMDPMKKVFNS-EVIEYDMTKTENIALVQNKGDFEPFKRL---PKKYWDVGVSNGSLFRFPLRKTESELSTRCYSDEMRFQKLIDKFLDEAFLSLIFLKNIKTMKFFI--IDNGSKEVEEIYSLDCNNTVETKPFTDQIKQNVKEKQFEKTEKLN-------RHLKLNQMWKGNLRSYSYAISEHFGYSGSDDDFKAMMHDEELSYIPLLSVALPL---DD------SDPGGHVFSALPLPLHTPKMTGMPVHINGFFALLQDRKDLKWKTLTEGGTSNDKTVNWNSCLITELAPVVYANLMTFLITQ----------FSSAEVYKAWPCIDAVDQRWHIFLEKFYKNMLSIKFIY 1606
            L + +K IL+ YP+ GQI KE+IQNAEDAGATEV F+YD+ +  T   +    +  +QGP+LY YNNA FT  DW GI ++  S K  D LKVGRFG+GF SV+H+TD+P + S     ++DP + +F   E  +    K ++  + +    F PF  +    K+ +  G   G+ FRFPLR   S+LS+  Y ++ +  +L + F  +A   L+FLK+++ +  ++   D   K V  + S +       +P + +I         +KT   N        ++ L +    + +  S+ +    G  G      ++   +EL ++P++ +A+PL   DD      SD  G  F  LPLP      TG+PVHI+GFF L  +R+ +KW+ L +     D    WN  L+  + P  YA L+   I +           S   +YK WP    V   W   LE  +  +L    IY
Sbjct:   96 LVDFLKDILRRYPEGGQILKELIQNAEDAGATEVKFLYDETQYGTETLWS-KDMAPYQGPALYVYNNAVFTPEDWHGIQEIARSRKKDDPLKVGRFGIGFNSVYHITDVPCIFSGDQIGMLDPHQTLFGPHESGQCWNLKDDSKEISELSDQFAPFVGIFGSTKETFINGNFPGTFFRFPLRLQPSQLSSNLY-NKQKVLELFESFRADADTVLLFLKSVQDVSLYVREADGTEKLVFRVTSSESKALKHERPNSIKILGTAISNYCKKTPSNNITCVTYHVNIVLEEESTKDAQKTSWLVCNSVGGRGISSKLDSLA--DELKFVPIIGIAMPLSSRDDEAKGATSDFSGKAFCFLPLPPGEESSTGLPVHISGFFGLTDNRRSIKWRELDQW---RDPAALWNEFLVMNVVPKAYATLILDSIKRLEMEKSSDFPLSVDVIYKLWPEASKVKVHWQPVLEPLFSELLQNAVIY 563

HSP 2 Score: 152.14 bits (383), Expect = 1.040e-37
Identity = 125/427 (29.27%), Postives = 204/427 (47.78%), Query Frame = 2 
Query:  269 RKSLCEEIKSILQTYPDDGQIFKEIIQNAEDAGATEVVFIYDKNELHTSKEYHCPKLTDFQGPSLYSYNNAKFTDSDWEGILKLGTSNKVKDALKVGRFGLGFKSVFHLTDLPVVIS-DGVTVLMDPMKKVFNSEVIEYDMTKTENIALVQNKGDFEP-FKRLPKKYWDV--GVSNGSLFRFPLRKTE----SELSTRCYSDEMRFQKLIDKFLDEAFLSLIFLKNIKTMKFFIIDNGSKEVEEIYSLDCNNT----VETKPFTDQIKQNVKEKQFEKTEKLNR--HLKLNQMWKGNLRSYSYAISEHFGYSGSDDDFKAMM---HDEELSYIPLLSVALPLDDSDPGGH-VFSALPLPLHTPKMTGMPVHINGFFALLQDRKDLKWKTLTEGGTSNDKTVNWNSCLITELAPVVYANLMTFLITQF 1495
            ++ L   IKSIL  YP + ++ KE++QNA+DA ATE+ F++D  + H        K    QGP+L  YNN  FT+ D  GI  LG   K  +  K G++G+GF SV+H+TD P  IS + +  + DP  +           + +          DF   F  +   Y      + N ++FRFPLR  E    SE+S+   SD M  Q L+DK   +    L+FL +++ +    ID  +  +  +YS+    T    ++ K F   +  +V +K+  K   + +  +    +  +GNL   ++ I    G+S  +   K+++    +++++  P   VA  +  +    H  F  LPL L     TG+P H+NG FAL   R++L W+     G  +D    WN+ L+T L    Y  L+  L  ++
Sbjct: 2525 KEKLTSRIKSILNAYPSEKEMLKELLQNADDAKATEICFVFDPRQ-HPVDRIFDDKWAPLQGPALCVYNNQPFTEDDVRGIQNLGKGTKEGNPYKTGQYGIGFNSVYHITDCPSFISGNDILCIFDPHARYAPGAT-----SISPGRMFRDLDADFRTQFSDVLDLYLGTHFKLDNCTMFRFPLRNAEMAKVSEISSVPASDRM-VQNLLDKLRSDGAELLMFLNHMEKISICEIDKSTGALNVLYSVKGKITDGDRLKRKQFHASVIDSVTKKRQLKDIPVQQITYTMDTEDSEGNLT--TWLICNRSGFSSMEKVSKSVISAHKNQDITLFPRGGVAACITHNYKKPHRAFCFLPLSLE----TGLPFHVNGHFALDSARRNL-WRDDNGVGVRSD----WNNSLMTALIAPAYVELLIQLKKRY 2933

HSP 3 Score: 132.109 bits (331), Expect = 2.456e-31
Identity = 92/307 (29.97%), Postives = 155/307 (50.49%), Query Frame = 2 
Query:  197 WLRFLCTGCISSSS*TMSVAKTFIRKSLCEEIKSILQTYPDDGQIFKEIIQNAEDAGATEVVFIYD-KNELHTSKEYHCPKLTDFQGPSLYSYNNAKFTDSDWEGILKLGTSNKVKDALKVGRFGLGFKSVFHLTDLPVVISDGVTVLMDPMKKVFNSEV-------IEYDMTKTENIALVQNKGDFEPF-----KRLPKKYWDVGVSNGSLFRFPLRKTE----SELSTRCYSDEMRFQKLIDKFLDEAFLSLIFLKNIKTM--KFFIIDNGSKEVEE----IYSLDCNNTVETKPFTDQIKQNVK 1048
            WL+  C      +   M   ++  R+ L   IK+IL+ YP    IFKE++QNA+DA ATE  F+ D +  +   +    P +    GP+L+S+NN++F+DSD+  I +LG S K  +  KVG+FGLGF SV+H+TD+P+++S    ++ DP     +  +       I+ + +K +   L +    F+PF      +LP         NG+LFR   R  +    SE+S+ CY +      L+D+F       +IF +++K+M  K+  I+  +  + +    I    C++     P    +K+  K
Sbjct: 1433 WLKVPCLSTRLINPENMGFEQSGQREPLTVRIKNILEEYPSVSDIFKELLQNADDANATECSFLIDMRRNMDIRENLLDPGMAACHGPALWSFNNSQFSDSDFVNITRLGESLKRGEVDKVGKFGLGFNSVYHITDIPIIMSREFMIMFDPNINHISKHIKDKSNPGIKINWSKQQK-RLRKFPNQFKPFIDVFGCQLPLTVEAPYSYNGTLFRLSFRTQQEAKVSEVSSTCY-NTADIYSLVDEFSLCGHRLIIFTQSVKSMYLKYLKIEETNPSLAQDTVIIKKKSCSSKALNTPVLSVLKEAAK 1737
The following BLAST results are available for this feature:
BLAST of TCONS_00029652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SACS1.471e-6232.21Sacsin OS=Homo sapiens GN=SACS PE=1 SV=2[more]
back to top