TCONS_00029614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029614
Unique NameTCONS_00029614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length861

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029614 ID=TCONS_00029614|Name=TCONS_00029614|organism=Clytia hemisphaerica|type=transcript|length=861bp
CGAAAATCGGAAAGTCATCGTGGTCAACGTTTAGGTGATTCATATGATCT
CAATACAAATAGTTTGTACGATAAACATCAATGTGATTTGCTCATAAACA
AAAGAGGAGCAGTCGTGGACGTTTTCAATAGTCACATCGTGTCCGACACA
AGGTTGGTATTTATCTGAAGAGCGGCCATCGATTTAAAAATCGATTGAAT
CCATGTTGGACGCTGCCATAGACGTTTAGTCTCCACAAATAATCAAATCA
GAGCATTAATAATTAAGTTGCTTGGGTTTGATTTAACCTGTGGTTTCTAT
ACAACGTTTGTTCATTATTGTTCATGATTCGGGGCGTGGCTGACGGTAAT
TTGGGTATCAATAAATCATAAGTTATACAGTTTGAAAAATGGGTAAgcaa
tcaaattttaatttgaaaggCTGCTCGCAAGCAGGTGTATCAAGTTTCAG
TGAAAGGTGCATACATTTGAAGAGTTTGAAATCAGCTACAGTTTGTTctg
gtttgttttcaattcaCAAAGATTGTTTGTTATTGTTAAATCTATATCCA
TCGTACCATCGATAGTGCGACGACTAACTAGACGGGGAAATAATTGTCGT
AGTTTTTCAATGTAGGTAAATCGTGGATTAGTGCCTCAGCTGTCACTCGC
CCAATGTCCGAACGTCCCGAGAGGATAATTGATTCGATAAATACGGTCGA
AATAGTCGGTTTCTCGTCGTACATCACTGCCAGAAGTTCATTTTAGATTC
TTCAGGCGATAATTTGAACTTCTAGGTTTGTCTGAGCTTGGAATTGTGCG
AAGGTAAACGCAACTAGGCAAGCTAGGACAAAATGCGGAGTTTGTATATC
GCTGAAAGAAC
Run BLAST on NCBI

transcript from alignment at sc0000757:13241..14101

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029614 ID=TCONS_00029614|Name=TCONS_00029614|organism=Clytia hemisphaerica|type=transcript|length=861bp|location=Sequence derived from alignment at sc0000757:13241..14101 (Clytia hemisphaerica)
GTTCTTTCAGCGATATACAAACTCCGCATTTTGTCCTAGCTTGCCTAGTT
GCGTTTACCTTCGCACAATTCCAAGCTCAGACAAACCTAGAAGTTCAAAT
TATCGCCTGAAGAATCTAAAATGAACTTCTGGCAGTGATGTACGACGAGA
AACCGACTATTTCGACCGTATTTATCGAATCAATTATCCTCTCGGGACGT
TCGGACATTGGGCGAGTGACAGCTGAGGCACTAATCCACGATTTACCTAC
ATTGAAAAACTACGACAATTATTTCCCCGTCTAGTTAGTCGTCGCACTAT
CGATGGTACGATGGATATAGATTTAACAATAACAAACAATCTTTGtgaat
tgaaaacaaaccagAACAAACTGTAGCTGATTTCAAACTCTTCAAATGTA
TGCACCTTTCACTGAAACTTGATACACCTGCTTGCGAGCAGcctttcaaa
ttaaaatttgattgcTTACCCATTTTTCAAACTGTATAACTTATGATTTA
TTGATACCCAAATTACCGTCAGCCACGCCCCGAATCATGAACAATAATGA
ACAAACGTTGTATAGAAACCACAGGTTAAATCAAACCCAAGCAACTTAAT
TATTAATGCTCTGATTTGATTATTTGTGGAGACTAAACGTCTATGGCAGC
GTCCAACATGGATTCAATCGATTTTTAAATCGATGGCCGCTCTTCAGATA
AATACCAACCTTGTGTCGGACACGATGTGACTATTGAAAACGTCCACGAC
TGCTCCTCTTTTGTTTATGAGCAAATCACATTGATGTTTATCGTACAAAC
TATTTGTATTGAGATCATATGAATCACCTAAACGTTGACCACGATGACTT
TCCGATTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016915XLOC_016915Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029614-exon-sc0000757-1491911889:13241..14101TCONS_00029614-exon-sc0000757-1491911889:13241..14101Clytia hemisphaericaexon
TCONS_00029614-exon-sc0000757-1510915933:13241..14101TCONS_00029614-exon-sc0000757-1510915933:13241..14101Clytia hemisphaericaexon
TCONS_00029614-exon-sc0000757-1575043694:13241..14101TCONS_00029614-exon-sc0000757-1575043694:13241..14101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000757supercontigsc0000757:13241..14101 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.100244	0	0.278477	2.13561	1.26136	6.76729	6.37802	6.0399	3.31593	5.8322	4.98859	15.9645	17.2383	21.6455	35.8429	24.8111	26.7102	3.61393	5.2309	23.3613	18.4006	23.2795	25.1741	0.949055	1.56653	4.71294	2.93996	0.55041	0.888733
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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