TCONS_00029591 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029591
Unique NameTCONS_00029591
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length203

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029591 ID=TCONS_00029591|Name=TCONS_00029591|organism=Clytia hemisphaerica|type=transcript|length=203bp
cattttaaacaatagatACAGGAAAAATAATAGAAGATACAACGGTAAAC
AGCGGGATGCCGCCGGAGAATCCGGTAAATAAGTCAAAATCTGTGGTATA
CTCCGAAAGTCAGAGAAAGACATGATTCTGAGAGcttgtttttgaagaat
aagAACTCGACGGGCGTGGATTGTTTGGCGTTGCCCCCAAATCTGGGCTG
CAT
Run BLAST on NCBI

transcript from alignment at sc0000756:132530..132732

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029591 ID=TCONS_00029591|Name=TCONS_00029591|organism=Clytia hemisphaerica|type=transcript|length=203bp|location=Sequence derived from alignment at sc0000756:132530..132732 (Clytia hemisphaerica)
ATGCAGCCCAGATTTGGGGGCAACGCCAAACAATCCACGCCCGTCGAGTT
cttattcttcaaaaacaagCTCTCAGAATCATGTCTTTCTCTGACTTTCG
GAGTATACCACAGATTTTGACTTATTTACCGGATTCTCCGGCGGCATCCC
GCTGTTTACCGTTGTATCTTCTATTATTTTTCCTGTatctattgtttaaa
atg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016903XLOC_016903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029591-exon-sc0000756-1491911889:132530..132732TCONS_00029591-exon-sc0000756-1491911889:132530..132732Clytia hemisphaericaexon
TCONS_00029591-exon-sc0000756-1510915933:132530..132732TCONS_00029591-exon-sc0000756-1510915933:132530..132732Clytia hemisphaericaexon
TCONS_00029591-exon-sc0000756-1575043694:132530..132732TCONS_00029591-exon-sc0000756-1575043694:132530..132732Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000756supercontigsc0000756:132530..132732 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.59639	0	0	1.76837	0	3.40237	8.20963	11.5286	1.34525	1.6663	5.20978	2.12637	2.12341	4.41037	4.53241	4.86397	4.79361	6.14162	0	7.10313	4.63043	2.25856	0	1.66409	25.5728	15.2968	2.18896	0	3.54373	3.6105
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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