TCONS_00029537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029537
Unique NameTCONS_00029537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029537 ID=TCONS_00029537|Name=TCONS_00029537|organism=Clytia hemisphaerica|type=transcript|length=339bp
CTTATGTGGTATTGTTAAAATTCGAGAAACCATTTTCGAGCATTTTCGAC
ACTCTAGAGTTACAAACCAACAACCGTTTTAAGAGATCTGGAAATTTCCT
AAATTTTCCTCTCAACAATTAGAAAGAAAGACTCCCTTTTAcctggaaaa
tttggaaaaccTTCCTTTTCCAGGGCCTGATTAAAACCTGAGAAAAGATC
AAAAGAGATTAATCAAACGAGAAATcctcttcaaaaaatttgttcaagGT
ATTTTCTTGAGAAGAAgaaaacacaacgttttttgaaTCCAACACGTTCA
AGTGTTCATTTGGTTTAAATGCACTACTTGTAGCTGACA
Run BLAST on NCBI

transcript from alignment at sc0000753:1..339

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029537 ID=TCONS_00029537|Name=TCONS_00029537|organism=Clytia hemisphaerica|type=transcript|length=339bp|location=Sequence derived from alignment at sc0000753:1..339 (Clytia hemisphaerica)
TGTCAGCTACAAGTAGTGCATTTAAACCAAATGAACACTTGAACGTGTTG
GAttcaaaaaacgttgtgttttcTTCTTCTCAAGAAAATACcttgaacaa
attttttgaagaggATTTCTCGTTTGATTAATCTCTTTTGATCTTTTCTC
AGGTTTTAATCAGGCCCTGGAAAAGGAAggttttccaaattttccaggTA
AAAGGGAGTCTTTCTTTCTAATTGTTGAGAGGAAAATTTAGGAAATTTCC
AGATCTCTTAAAACGGTTGTTGGTTTGTAACTCTAGAGTGTCGAAAATGC
TCGAAAATGGTTTCTCGAATTTTAACAATACCACATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016857XLOC_016857Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029537-exon-sc0000753-1491911889:1..339TCONS_00029537-exon-sc0000753-1491911889:1..339Clytia hemisphaericaexon
TCONS_00029537-exon-sc0000753-1510915933:1..339TCONS_00029537-exon-sc0000753-1510915933:1..339Clytia hemisphaericaexon
TCONS_00029537-exon-sc0000753-1575043694:1..339TCONS_00029537-exon-sc0000753-1575043694:1..339Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000753supercontigsc0000753:1..339 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.3704	9.23288	2.61087	2.23466	1.85378	1.45409	1.05258	0.68705	1.63008	0.592002	0	0.727009	0.931302	1.54457	0.330596	0.67812	0.614603	1.10486	1.45051	3.03571	1.97049	0.468936	12.1786	9.22469	0	0	2.48122	4.16341	7.02719	9.19269
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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