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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029423 ID=TCONS_00029423|Name=TCONS_00029423|organism=Clytia hemisphaerica|type=transcript|length=2075bp
attggTCTTCCAAGTCTTTAGATTATTTCTTAAATTACCACGGCAATGAA
AATGTAAACGAGGTCGGCGTGACAAAATACATTTCGAGAGAGGTTTGACC
GTAGAAACCATGAAATTAAAACACTTTCCTCTtctcactttcgttttcgg
atcAAGATGGCGTCGCCAACGACCGAAAAAACTAAAGTGAGATATGATGT
GACTAAATCTAATAAATCTAATGAGAACAACACAATCAGTGAGGAAAATC
AATTAAATGATGCagatttaacaaaaacaaacgTTGAAGGAACTGATAGG
AATGGTAGTTTAAAGGAAAGAGGAAGAGACAAGaagaaaaagaggaaaag
aacaCCCTCTCCCTCATCCTCCTCCAGCAGAAGTTCCAGTTCATCATCAA
GCAGCTCAAGTAGCTCCGATTCCTCTGAGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCCTCTCCCTCATCCTCCTCCAGCAGA
AGTTCCAGTTCATCATCAAGCAGCTCAAATAGCTCCGATTCCTCTGAGGA
GAGACGGAAAAAGGagtaaaagaagaagaagcaaaagaagaaaaagcaag
tcaaaaagaaacgaaaatccagaaaaagaaGCAGAAGTTCCTCTACCTCA
TCATCTAATTCGAGTGACGACAAACCAGAATTATTCCAGATGGACGTCAA
TGAACATGACTGGAAACTTGATCCCAGACTTGTGAAGTATCTGGAGAAGC
ACATCAGGAATTACATACCTGATAAAGAGCTTGAGAAAGACATACTGGAA
GAAACACCAGTCCCAAGCAACGTCTCACCTGAGTTAAAAATGGATTCATT
ATTCGATTGCTTACTCAGAGAAAAAGGGTCAATGGGAACTAAAACCCTGG
CCGTGGACAAATCGATATCCCGGATATCGAATAAAGTCAGAGATATCTTG
GCTCCGCTTGCCAAAATCTGGCAGAGCGTTGAGAGAGCAAGATCAGGAGA
CGAGAATGAAAAACTCGATCTCGAAGAGGTGGCCACTCATTTCCAACAGT
CGATACTGCTGTTAGGACAGGCCCTCAATGCCAGCAATTTCTTCCGAAGG
AAAAATGCTTTGATGGGACTTGGCATTCGTGAAAGCTATATCAGTGTGTG
GCTCAGAGAGACCCTATTAGAGGAGTTACAAGAAAGTGatggaaaacttt
ttggagagGAGACAATAAAATCCCTCACAAAACAGGCAAAAGTGAACAAC
CAGTCACTCAAACAATTCCTCTTTTCAAGAAGAGTACAAACAGCTAATCG
CACTCCCTTTTCATGGAGCTCCTCCCGATCAACAAGCCACGGAGAGGGGC
ACGAACAATACACCGATGAACAACAGGCTGGCTTGCACCACAGAATTCAA
AACCGAAGAGGCAAAGGTAAGAAAAATTCTGTCAAACTTCACAGAACCTC
TCCCCAGTCAAGCAAAACCTCTGCTGACAAACGGGGAGTCacgaaaattt
gggaaaatacACCCAAGTATAAAGAACCTCATAGAGGATTTATCAAATCC
CCAGTTGACACAGACTGGAAGGACaggattttttcaaaacaattggtCAA
AACTGACTCAGGACAAATTCATCTTGGAAACAGTTTCAGGCTTAGTGATC
CCAATAATAGGGAAGCCGATTCAAAAAACAAGACCACAACAAATAAATTC
AAATTCCAAAATGAAAGCCTTGATAAGAGCAGAGATAAGAACCTTACTGG
AGAAAGGGGCTGTGAAGAGAGTTCTAAACACAGAAGGTCAATTtttgtcc
actctatttttaaaagagaaaaaggaaCCAGGAAAATACAGGCCAGTTAT
AAATCTAAAGGAACTGAACTCATACATTCcatatcaaaaattcaaaatgg
aaacTTTGAAGGATGTGAAAAACATCCTCCAGAAGGGGGACTTCATGGTC
AAAATCGACCTGAAGGACGCTTATTTTGCAATACCGTTGCATCCCCAATC
AAAGAAGTATGTGAGATTCAGCTGGGAAGGAAGCCTATACGAATTCCAAT
GCCTGATGTTCGGATTGGGACCAGC Run BLAST on NCBI protein sequence of TCONS_00029423-protein >TCONS_00029423-protein ID=TCONS_00029423-protein|Name=TCONS_00029423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
MDVNEHDWKLDPRLVKYLEKHIRNYIPDKELEKDILEETPVPSNVSPELK
MDSLFDCLLREKGSMGTKTLAVDKSISRISNKVRDILAPLAKIWQSVERA
RSGDENEKLDLEEVATHFQQSILLLGQALNASNFFRRKNALMGLGIRESY
ISVWLRETLLEELQESDGKLFGEETIKSLTKQAKVNNQSLKQFLFSRRVQ
TANRTPFSWSSSRSTSHGEGHEQYTDEQQAGLHHRIQNRRGKGKKNSVKL
HRTSPQSSKTSADKRGVTKIWENTPKYKEPHRGFIKSPVDTDWKDRIFSK
QLVKTDSGQIHLGNSFRLSDPNNREADSKNKTTTNKFKFQNESLDKSRDK
NLTGERGCEESSKHRRSIFVHSIFKREKGTRKIQASYKSKGTELIHSISK
IQNGNFEGCEKHPPEGGLHGQNRPEGRLFCNTVASPIKEVCEIQLGRKPI
RIPMPDVRIGTS Run BLAST on NCBI transcript from alignment at sc0000747:105510..107584 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029423 ID=TCONS_00029423|Name=TCONS_00029423|organism=Clytia hemisphaerica|type=transcript|length=2075bp|location=Sequence derived from alignment at sc0000747:105510..107584 (Clytia hemisphaerica)
GCTGGTCCCAATCCGAACATCAGGCATTGGAATTCGTATAGGCTTCCTTC
CCAGCTGAATCTCACATACTTCTTTGATTGGGGATGCAACGGTATTGCAA
AATAAGCGTCCTTCAGGTCGATTTTGACCATGAAGTCCCCCTTCTGGAGG
ATGTTTTTCACATCCTTCAAAgtttccattttgaatttttgatatgGAAT
GTATGAGTTCAGTTCCTTTAGATTTATAACTGGCCTGTATTTTCCTGGtt
cctttttctcttttaaaaatagagtggacaaaAATTGACCTTCTGTGTTT
AGAACTCTCTTCACAGCCCCTTTCTCCAGTAAGGTTCTTATCTCTGCTCT
TATCAAGGCTTTCATTTTGGAATTTGAATTTATTTGTTGTGGTCTTGTTT
TTTGAATCGGCTTCCCTATTATTGGGATCACTAAGCCTGAAACTGTTTCC
AAGATGAATTTGTCCTGAGTCAGTTTTGaccaattgttttgaaaaaatcc
tGTCCTTCCAGTCTGTGTCAACTGGGGATTTGATAAATCCTCTATGAGGT
TCTTTATACTTGGGTgtattttcccaaattttcgtGACTCCCCGTTTGTC
AGCAGAGGTTTTGCTTGACTGGGGAGAGGTTCTGTGAAGTTTGACAGAAT
TTTTCTTACCTTTGCCTCTTCGGTTTTGAATTCTGTGGTGCAAGCCAGCC
TGTTGTTCATCGGTGTATTGTTCGTGCCCCTCTCCGTGGCTTGTTGATCG
GGAGGAGCTCCATGAAAAGGGAGTGCGATTAGCTGTTTGTACTCTTCTTG
AAAAGAGGAATTGTTTGAGTGACTGGTTGTTCACTTTTGCCTGTTTTGTG
AGGGATTTTATTGTCTCctctccaaaaagttttccatCACTTTCTTGTAA
CTCCTCTAATAGGGTCTCTCTGAGCCACACACTGATATAGCTTTCACGAA
TGCCAAGTCCCATCAAAGCATTTTTCCTTCGGAAGAAATTGCTGGCATTG
AGGGCCTGTCCTAACAGCAGTATCGACTGTTGGAAATGAGTGGCCACCTC
TTCGAGATCGAGTTTTTCATTCTCGTCTCCTGATCTTGCTCTCTCAACGC
TCTGCCAGATTTTGGCAAGCGGAGCCAAGATATCTCTGACTTTATTCGAT
ATCCGGGATATCGATTTGTCCACGGCCAGGGTTTTAGTTCCCATTGACCC
TTTTTCTCTGAGTAAGCAATCGAATAATGAATCCATTTTTAACTCAGGTG
AGACGTTGCTTGGGACTGGTGTTTCTTCCAGTATGTCTTTCTCAAGCTCT
TTATCAGGTATGTAATTCCTGATGTGCTTCTCCAGATACTTCACAAGTCT
GGGATCAAGTTTCCAGTCATGTTCATTGACGTCCATCTGGAATAATTCTG
GTTTGTCGTCACTCGAATTAGATGATGAGGTAGAGGAACTTCTGCttctt
tttctggattttcgtttctttttgacttgctttttcttcttttgcttctt
cttcttttactCCTTTTTCCGTCTCTCCTCAGAGGAATCGGAGCTATTTG
AGCTGCTTGATGATGAACTGGAACTTCTGCTGGAGGAGGATGAGGGAGAG
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCA
GAGGAATCGGAGCTACTTGAGCTGCTTGATGATGAACTGGAACTTCTGCT
GGAGGAGGATGAGGGAGAGGGtgttcttttcctctttttcttCTTGTCTC
TTCCTCTTTCCTTTAAACTACCATTCCTATCAGTTCCTTCAAcgtttgtt
tttgttaaatctGCATCATTTAATTGATTTTCCTCACTGATTGTGTTGTT
CTCATTAGATTTATTAGATTTAGTCACATCATATCTCACTTTAGTTTTTT
CGGTCGTTGGCGACGCCATCTTgatccgaaaacgaaagtgagaAGAGGAA
AGTGTTTTAATTTCATGGTTTCTACGGTCAAACCTCTCTCGAAATGTATT
TTGTCACGCCGACCTCGTTTACATTTTCATTGCCGTGGTAATTTAAGAAA
TAATCTAAAGACTTGGAAGAccaat Coding sequence (CDS) from alignment at sc0000747:105510..107584 >TCONS_00029423 ID=TCONS_00029423|Name=TCONS_00029423|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at sc0000747:105510..107584 (Clytia hemisphaerica)
GCTGGTCCCAATCCGAACATCAGGCATTGGAATTCGTATAGGCTTCCTTC
CCAGCTGAATCTCACATACTTCTTTGATTGGGGATGCAACGGTATTGCAA
AATAAGCGTCCTTCAGGTCGATTTTGACCATGAAGTCCCCCTTCTGGAGG
ATGTTTTTCACATCCTTCAAAgtttccattttgaatttttgatatgGAAT
GTATGAGTTCAGTTCCTTTAGATTTATAACTGGCCTGTATTTTCCTGGtt
cctttttctcttttaaaaatagagtggacaaaAATTGACCTTCTGTGTTT
AGAACTCTCTTCACAGCCCCTTTCTCCAGTAAGGTTCTTATCTCTGCTCT
TATCAAGGCTTTCATTTTGGAATTTGAATTTATTTGTTGTGGTCTTGTTT
TTTGAATCGGCTTCCCTATTATTGGGATCACTAAGCCTGAAACTGTTTCC
AAGATGAATTTGTCCTGAGTCAGTTTTGaccaattgttttgaaaaaatcc
tGTCCTTCCAGTCTGTGTCAACTGGGGATTTGATAAATCCTCTATGAGGT
TCTTTATACTTGGGTgtattttcccaaattttcgtGACTCCCCGTTTGTC
AGCAGAGGTTTTGCTTGACTGGGGAGAGGTTCTGTGAAGTTTGACAGAAT
TTTTCTTACCTTTGCCTCTTCGGTTTTGAATTCTGTGGTGCAAGCCAGCC
TGTTGTTCATCGGTGTATTGTTCGTGCCCCTCTCCGTGGCTTGTTGATCG
GGAGGAGCTCCATGAAAAGGGAGTGCGATTAGCTGTTTGTACTCTTCTTG
AAAAGAGGAATTGTTTGAGTGACTGGTTGTTCACTTTTGCCTGTTTTGTG
AGGGATTTTATTGTCTCctctccaaaaagttttccatCACTTTCTTGTAA
CTCCTCTAATAGGGTCTCTCTGAGCCACACACTGATATAGCTTTCACGAA
TGCCAAGTCCCATCAAAGCATTTTTCCTTCGGAAGAAATTGCTGGCATTG
AGGGCCTGTCCTAACAGCAGTATCGACTGTTGGAAATGAGTGGCCACCTC
TTCGAGATCGAGTTTTTCATTCTCGTCTCCTGATCTTGCTCTCTCAACGC
TCTGCCAGATTTTGGCAAGCGGAGCCAAGATATCTCTGACTTTATTCGAT
ATCCGGGATATCGATTTGTCCACGGCCAGGGTTTTAGTTCCCATTGACCC
TTTTTCTCTGAGTAAGCAATCGAATAATGAATCCATTTTTAACTCAGGTG
AGACGTTGCTTGGGACTGGTGTTTCTTCCAGTATGTCTTTCTCAAGCTCT
TTATCAGGTATGTAATTCCTGATGTGCTTCTCCAGATACTTCACAAGTCT
GGGATCAAGTTTCCAGTCATGTTCATTGACGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029423-exon-sc0000747-1491911889:105510..107584 | TCONS_00029423-exon-sc0000747-1491911889:105510..107584 | Clytia hemisphaerica | exon |
| TCONS_00029423-exon-sc0000747-1510915933:105510..107584 | TCONS_00029423-exon-sc0000747-1510915933:105510..107584 | Clytia hemisphaerica | exon |
| TCONS_00029423-exon-sc0000747-1575043694:105510..107584 | TCONS_00029423-exon-sc0000747-1575043694:105510..107584 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000747 | supercontig | sc0000747:105510..107584 . |
Blast
The following BLAST results are available for this feature:
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