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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029383 ID=TCONS_00029383|Name=TCONS_00029383|organism=Clytia hemisphaerica|type=transcript|length=3181bp
CAACATCCATCTTCCAAATCTTTGACCCAAAATAGGTTCGAGTGAAAAGG
TTTTGTTTCAACAACATCACGAGTGTGGTAGTTTGAATGAGATAATATCA
ATGAAGAACcacaaatttgaattttgaagaattATTATTGTAGTTGTAGA
TGTAATCTACATCAAGTATCATTTGCTGCTTGCACTTTGCAGTATAAACT
TTCGACAACTTTCTAATTTCTAACAACTTTCTAATTTCTAACAACTTTCA
GGAGGCTTCCAATTATTACTTTCCAACCCACCCTAGCTAGATGGTGGGTA
AAcggttttccaaaaaagttgaaaagggcGGGGTTCAGAGAGTTTCTAGA
TTTAGGGCGGGGTTGGTGGCAAAGGGTGGGGAATTTTTTCGAGGGTGGGG
TTGAAGACTTTTTTCGAGGGTGGGGTTGAAGActttttccttcaattttt
accaaaaaggatactaattttagatttaaagtATATCATTTGCAAGAAAG
TactttaaaagtatttttaatgCAAACAAAAATAATGTCACACTCATTCG
GAGTTAtgattataatttttatttctttcagaATTACTAGGTTTCAATAA
TGGTGTtgcatttcaattttttatttcttttctgtATAGAGTTCCAGTTG
CAATTTCAAAAATGCCTAAGGAAAGAGTTGCCAAAAAATCGAGGACTCAC
CAACAAACTCGTACAGAGGGAATTCAATTCAATACAGGACTTGGTCagca
tattttaaaaaatccTTTGATAGTCAATGCTATCATTGAAAAAGCAGCAA
TCAAGCCGACAGATACAGTTCTTGAAGTTGGTCCTGGAACAGGTAATATG
AGTGTTAAGATCATGGAAAAGGGTAAAAAATTAATTGCTTGTGAAGTTGA
CCCAAGGATGGCTGCAGAACTTCAAAAGAGGGTCCAAGGTACACCTGAAG
CTAATAAATTACATCTTCTGGTTGGTGATGTTTTGAAAGCTGATCTTCCA
TATTTTGATTGTTGTGTTGCTAATCTTCCATATCAAATCTCATCTCCAtt
tgttttcaaacttttactCCACAGACCAATTTTTAGATGTGCAGTACTCA
TGTTTCAGCGTGAATTTGCACTCAGGTTGGTGGCTAAACCAGGGGATAAA
TTATATTGTCGTCTATCAATTAATACGCAATTGTTATCCAAAGTTGATCA
TTTAATGAAAGTGGGGAAAAATAATTTCCGACCTCCGCCCAAAGTGGAAT
CTAGCGTCATCAGAATTGAACCCAAAAATCCTCCACCGCCAATCAACTTC
CAGGAATGGGATGGCCTTGTTCGTATAGCATTTGTCAGAAAAAATAAGAC
CTTGAGTGCATGTTTCAGCTCTAAGGCAGTCATCGAAATGTtggataaaa
attataaaattcatTGCTCTATGAACAGTATTATGGTAGATGAGGatttt
gatatcaaaacaaaagtccAAGAAATTTTACAAGAAAATGAATTCAACAA
GAAACGTGCAAGAACCATGGATATAGACgattttcttcaacttttagACA
AGTTTAATAAAAATGGAATACATTTTGCATGAAAatagaaattataaaaa
aaaatgatttgaatgTGTCTCAAAAAGGATATATTaattttatgtttcat
tttttttttggtgtttttaaaaGTAACTTGTCATGGtgtcttttttaata
tttttatcaatttctgCACTATGTATACTGTGTAACTACGTcatcttttt
tcaaagtttgaaaacTCTTGTATGTTTAGGAAAACACAATGCATTGTTTT
GTTTTAGACAAATCAGCTGCATCTATTTGGACTCAAAGTTTTTGTCTCCT
Tattattatttctttattttactttattcttttttacagggtataaaata
aataacaaaaaataagaaaaataagatcACATTTTTTATAGAAGATGGCA
ATGGACCCTgcacttttgaaggaattcaatgcattcaaaaagaaaagttt
ggCAACACCTAGTGTCGAGGCTAAAAAGACTCCAAGCTCTACTGTTTCTA
AACCTTCATCATCTAAAAGAAAAGTCAAGAGAAAGAATGAACTACCTGCC
CAGCTTTTACAGCAAGCTAAGAAACAAGCACAGCAATCacaatttaatta
caaaacaCATGCTCCTTTGAAATCCAAAAGTAGATTTGCTATTTTGTCAT
CGTGTGTTGACCATTTGAAAGGAAACTATCAAAAAAGAATATTCGAAGGC
TACACGCTAGATGAATTGTTAGATATCACAAAGAATACAGACATTAAACC
CCACGATAAAGAATGGTTATTTGTTGCACTGAGAGAAAACCCTAAAATTG
GTATTGATGATGGAAAGTATATTTTCAAGCCTAAATACACGTTGAAAGAC
AAGAAATCATTAGTGAAGCTTCTAGACAAGCATGATCAAAAGGGACACGG
TGGCATTCTACTTGATGATATTAGAGAGGGTCTACCTAATGCTGATGATA
TCATAAAAGCAATCGCTGACAAAGTTACATTTGTCACACGCTCAAATGAC
AAGAAAGCTGTTTTGTTTCATTATGATCCCAGTATGGCGGTCAGTGTTGA
TgaggaatttcaaaaacattggCGTAGTGTTGCCGTTGAAGGGTTAGCAG
AGCCTGATATAGAGAAATATTTGAGTAGCAGTGGTATCACAACTATGCAA
GGTGTAGCACCCAAAGCGCAGAAAGCTCAAAAGCGTAGAGGTGGAAAACG
TAAAAGGACAGGCAAACTACACAATGACCATTTACAAAGCCATGTTTTGA
AAGATTACTCTGAAGTTCCTAAGAAAGGTACTCACTAGATTAAAACTAAA
AAGTACAATGAAAGGCTGGTCATAACATTGATGAGTGCAATTTGTTCGGG
TTTGGTACGGTGGAATTAGAAAATCAGATTCCCAGTTTATTATTTAAGAA
TTCACGAGTTTTTGATataatatactttttttttaagtaatgagattgta
ttgttgtaaccttcttaaacttttttaattttaataaaaaaattgccctt
tttgtttttatccttTCTTTGTGTaggatttaatttttaaaacctCTTTT
GGAACTTGAATATCTTCTTACCAAGGTTTCTTATCAATCACTGTTGATTA
GACAAATGATCGTCATATTATATGTTGAATC Run BLAST on NCBI protein sequence of TCONS_00029383-protein >TCONS_00029383-protein ID=TCONS_00029383-protein|Name=TCONS_00029383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MPKERVAKKSRTHQQTRTEGIQFNTGLGQHILKNPLIVNAIIEKAAIKPT
DTVLEVGPGTGNMSVKIMEKGKKLIACEVDPRMAAELQKRVQGTPEANKL
HLLVGDVLKADLPYFDCCVANLPYQISSPFVFKLLLHRPIFRCAVLMFQR
EFALRLVAKPGDKLYCRLSINTQLLSKVDHLMKVGKNNFRPPPKVESSVI
RIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSACFSSKAVIEMLDKNYKI
HCSMNSIMVDEDFDIKTKVQEILQENEFNKKRARTMDIDDFLQLLDKFNK
NGIHFA Run BLAST on NCBI transcript from alignment at sc0000744:156810..159990 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029383 ID=TCONS_00029383|Name=TCONS_00029383|organism=Clytia hemisphaerica|type=transcript|length=3181bp|location=Sequence derived from alignment at sc0000744:156810..159990 (Clytia hemisphaerica)
GATTCAACATATAATATGACGATCATTTGTCTAATCAACAGTGATTGATA
AGAAACCTTGGTAAGAAGATATTCAAGTTCCAAAAGaggttttaaaaatt
aaatcctACACAAAGAaaggataaaaacaaaaagggcaatttttttatta
aaattaaaaaagtttaagaaggttacaacaatacaatctcattacttaaa
aaaaaagtatattatATCAAAAACTCGTGAATTCTTAAATAATAAACTGG
GAATCTGATTTTCTAATTCCACCGTACCAAACCCGAACAAATTGCACTCA
TCAATGTTATGACCAGCCTTTCATTGTACTTTTTAGTTTTAATCTAGTGA
GTACCTTTCTTAGGAACTTCAGAGTAATCTTTCAAAACATGGCTTTGTAA
ATGGTCATTGTGTAGTTTGCCTGTCCTTTTACGTTTTCCACCTCTACGCT
TTTGAGCTTTCTGCGCTTTGGGTGCTACACCTTGCATAGTTGTGATACCA
CTGCTACTCAAATATTTCTCTATATCAGGCTCTGCTAACCCTTCAACGGC
AACACTACGccaatgtttttgaaattcctcATCAACACTGACCGCCATAC
TGGGATCATAATGAAACAAAACAGCTTTCTTGTCATTTGAGCGTGTGACA
AATGTAACTTTGTCAGCGATTGCTTTTATGATATCATCAGCATTAGGTAG
ACCCTCTCTAATATCATCAAGTAGAATGCCACCGTGTCCCTTTTGATCAT
GCTTGTCTAGAAGCTTCACTAATGATTTCTTGTCTTTCAACGTGTATTTA
GGCTTGAAAATATACTTTCCATCATCAATACCAATTTTAGGGTTTTCTCT
CAGTGCAACAAATAACCATTCTTTATCGTGGGGTTTAATGTCTGTATTCT
TTGTGATATCTAACAATTCATCTAGCGTGTAGCCTTCGAATATTCTTTTT
TGATAGTTTCCTTTCAAATGGTCAACACACGATGACAAAATAGCAAATCT
ACTTTTGGATTTCAAAGGAGCATGtgttttgtaattaaattgtGATTGCT
GTGCTTGTTTCTTAGCTTGCTGTAAAAGCTGGGCAGGTAGTTCATTCTTT
CTCTTGACTTTTCTTTTAGATGATGAAGGTTTAGAAACAGTAGAGCTTGG
AGTCTTTTTAGCCTCGACACTAGGTGTTGccaaacttttctttttgaatg
cattgaattccttcaaaagtgcAGGGTCCATTGCCATCTTCTATAAAAAA
TGTgatcttatttttcttattttttgttatttattttataccctgtaaaa
aagaataaagtaaaataaagaaataataatAAGGAGACAAAAACTTTGAG
TCCAAATAGATGCAGCTGATTTGTCTAAAACAAAACAATGCATTGTGTTT
TCCTAAACATACAAGAgttttcaaactttgaaaaaagatgACGTAGTTAC
ACAGTATACATAGTGcagaaattgataaaaatattaaaaaagacaCCATG
ACAAGTTACttttaaaaacaccaaaaaaaaaatgaaacataaaattAATA
TATCCTTTTTGAGACAcattcaaatcatttttttttataatttctatTTT
CATGCAAAATGTATTCCATTTTTATTAAACTTGTctaaaagttgaagaaa
atcGTCTATATCCATGGTTCTTGCACGTTTCTTGTTGAATTCATTTTCTT
GTAAAATTTCTTggacttttgttttgatatcaaaatCCTCATCTACCATA
ATACTGTTCATAGAGCAatgaattttataatttttatccaACATTTCGAT
GACTGCCTTAGAGCTGAAACATGCACTCAAGGTCTTATTTTTTCTGACAA
ATGCTATACGAACAAGGCCATCCCATTCCTGGAAGTTGATTGGCGGTGGA
GGATTTTTGGGTTCAATTCTGATGACGCTAGATTCCACTTTGGGCGGAGG
TCGGAAATTATTTTTCCCCACTTTCATTAAATGATCAACTTTGGATAACA
ATTGCGTATTAATTGATAGACGACAATATAATTTATCCCCTGGTTTAGCC
ACCAACCTGAGTGCAAATTCACGCTGAAACATGAGTACTGCACATCTAAA
AATTGGTCTGTGGagtaaaagtttgaaaacaaaTGGAGATGAGATTTGAT
ATGGAAGATTAGCAACACAACAATCAAAATATGGAAGATCAGCTTTCAAA
ACATCACCAACCAGAAGATGTAATTTATTAGCTTCAGGTGTACCTTGGAC
CCTCTTTTGAAGTTCTGCAGCCATCCTTGGGTCAACTTCACAAGCAATTA
ATTTTTTACCCTTTTCCATGATCTTAACACTCATATTACCTGTTCCAGGA
CCAACTTCAAGAACTGTATCTGTCGGCTTGATTGCTGCTTTTTCAATGAT
AGCATTGACTATCAAAggattttttaaaatatgctGACCAAGTCCTGTAT
TGAATTGAATTCCCTCTGTACGAGTTTGTTGGTGAGTCCTCGATTTTTTG
GCAACTCTTTCCTTAGGCATTTTTGAAATTGCAACTGGAACTCTATacag
aaaagaaataaaaaattgaaatgcaACACCATTATTGAAACCTAGTAATt
ctgaaagaaataaaaattataatcaTAACTCCGAATGAGTGTGACATTAT
TTTTGTTTGcattaaaaatacttttaaagtACTTTCTTGCAAATGATATa
ctttaaatctaaaattagtatcctttttggtaaaaattgaaggaaaaagT
CTTCAACCCCACCCTCGAAAAAAGTCTTCAACCCCACCCTCGAAAAAATT
CCCCACCCTTTGCCACCAACCCCGCCCTAAATCTAGAAACTCTCTGAACC
CCgcccttttcaacttttttggaaaaccgTTTACCCACCATCTAGCTAGG
GTGGGTTGGAAAGTAATAATTGGAAGCCTCCTGAAAGTTGTTAGAAATTA
GAAAGTTGTTAGAAATTAGAAAGTTGTCGAAAGTTTATACTGCAAAGTGC
AAGCAGCAAATGATACTTGATGTAGATTACATCTACAACTACAATAATaa
ttcttcaaaattcaaatttgtgGTTCTTCATTGATATTATCTCATTCAAA
CTACCACACTCGTGATGTTGTTGAAACAAAACCTTTTCACTCGAACCTAT
TTTGGGTCAAAGATTTGGAAGATGGATGTTG Coding sequence (CDS) from alignment at sc0000744:156810..159990 >TCONS_00029383 ID=TCONS_00029383|Name=TCONS_00029383|organism=Clytia hemisphaerica|type=CDS|length=921bp|location=Sequence derived from alignment at sc0000744:156810..159990 (Clytia hemisphaerica)
TCATGCAAAATGTATTCCATTTTTATTAAACTTGTctaaaagttgaagaa
aatcGTCTATATCCATGGTTCTTGCACGTTTCTTGTTGAATTCATTTTCT
TGTAAAATTTCTTggacttttgttttgatatcaaaatCCTCATCTACCAT
AATACTGTTCATAGAGCAatgaattttataatttttatccaACATTTCGA
TGACTGCCTTAGAGCTGAAACATGCACTCAAGGTCTTATTTTTTCTGACA
AATGCTATACGAACAAGGCCATCCCATTCCTGGAAGTTGATTGGCGGTGG
AGGATTTTTGGGTTCAATTCTGATGACGCTAGATTCCACTTTGGGCGGAG
GTCGGAAATTATTTTTCCCCACTTTCATTAAATGATCAACTTTGGATAAC
AATTGCGTATTAATTGATAGACGACAATATAATTTATCCCCTGGTTTAGC
CACCAACCTGAGTGCAAATTCACGCTGAAACATGAGTACTGCACATCTAA
AAATTGGTCTGTGGagtaaaagtttgaaaacaaaTGGAGATGAGATTTGA
TATGGAAGATTAGCAACACAACAATCAAAATATGGAAGATCAGCTTTCAA
AACATCACCAACCAGAAGATGTAATTTATTAGCTTCAGGTGTACCTTGGA
CCCTCTTTTGAAGTTCTGCAGCCATCCTTGGGTCAACTTCACAAGCAATT
AATTTTTTACCCTTTTCCATGATCTTAACACTCATATTACCTGTTCCAGG
ACCAACTTCAAGAACTGTATCTGTCGGCTTGATTGCTGCTTTTTCAATGA
TAGCATTGACTATCAAAggattttttaaaatatgctGACCAAGTCCTGTA
TTGAATTGAATTCCCTCTGTACGAGTTTGTTGGTGAGTCCTCGATTTTTT
GGCAACTCTTTCCTTAGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029383-exon-sc0000744-1491911889:156810..159990 | TCONS_00029383-exon-sc0000744-1491911889:156810..159990 | Clytia hemisphaerica | exon |
| TCONS_00029383-exon-sc0000744-1510915933:156810..159990 | TCONS_00029383-exon-sc0000744-1510915933:156810..159990 | Clytia hemisphaerica | exon |
| TCONS_00029383-exon-sc0000744-1575043694:156810..159990 | TCONS_00029383-exon-sc0000744-1575043694:156810..159990 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000744 | supercontig | sc0000744:156810..159990 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000154 | rRNA modification |
| GO:0006364 | rRNA processing |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008649 | rRNA methyltransferase activity |
| GO:0000179 | rRNA (adenine-N6,N6-)-dimethyltransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0000154 |
rRNA modification |
| biological_process |
GO:0006364 |
rRNA processing |
| molecular_function |
GO:0000179 |
rRNA (adenine-N6,N6-)-dimethyltransferase activity |
| molecular_function |
GO:0008649 |
rRNA methyltransferase activity |
Blast
BLAST of TCONS_00029383 vs. Swiss-Prot (Human)
Match: DIM1 (Probable dimethyladenosine transferase OS=Homo sapiens GN=DIMT1 PE=1 SV=1) HSP 1 Score: 486.108 bits (1250), Expect = 1.142e-162 Identity = 222/287 (77.35%), Postives = 259/287 (90.24%), Query Frame = 2
Query: 719 GIQFNTGLGQHILKNPLIVNAIIEKAAIKPTDTVLEVGPGTGNMSVKIMEKGKKLIACEVDPRMAAELQKRVQGTPEANKLHLLVGDVLKADLPYFDCCVANLPYQISSPFVFKLLLHRPIFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLSKVDHLMKVGKNNFRPPPKVESSVIRIEPKNPPPPINFQEWDGLVRIAFVRKNKTLSACFSSKAVIEMLDKNYKIHCSMNSIMVDEDFDIKTKVQEILQENEFNKKRARTMDIDDFLQLLDKFNKNGIHFA 1579
G+ FNTG+GQHILKNPLI+N+II+KAA++PTD VLEVGPGTGNM+VK++EK KK++ACE+DPR+ AEL KRVQGTP A+KL +LVGDVLK DLP+FD CVANLPYQISSPFVFKLLLHRP FRCA+LMFQREFALRLVAKPGDKLYCRLSINTQLL++VDHLMKVGKNNFRPPPKVESSV+RIEPKNPPPPINFQEWDGLVRI FVRKNKTLSA F S AV ++L+KNY+IHCS+++I++ EDF I K+Q+IL F+ KRAR+MDIDDF++LL FN GIHF+
Sbjct: 27 GLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHNIIIPEDFSIADKIQQILTSTGFSDKRARSMDIDDFIRLLHGFNAEGIHFS 313
The following BLAST results are available for this feature:
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