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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029367 ID=TCONS_00029367|Name=TCONS_00029367|organism=Clytia hemisphaerica|type=transcript|length=2898bpRun BLAST on NCBI protein sequence of TCONS_00029367-protein >TCONS_00029367-protein ID=TCONS_00029367-protein|Name=TCONS_00029367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=965bp RIREPCVLKSMDPNNFTAKINQLNDFSARLNAGGVNIEVISREIVTSLKYRun BLAST on NCBI transcript from alignment at sc0000744:141096..155785- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029367 ID=TCONS_00029367|Name=TCONS_00029367|organism=Clytia hemisphaerica|type=transcript|length=14690bp|location=Sequence derived from alignment at sc0000744:141096..155785- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000744:141096..155785- >TCONS_00029367 ID=TCONS_00029367|Name=TCONS_00029367|organism=Clytia hemisphaerica|type=CDS|length=40530bp|location=Sequence derived from alignment at sc0000744:141096..155785- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00029367 vs. Swiss-Prot (Human)
Match: UNC79 (Protein unc-79 homolog OS=Homo sapiens GN=UNC79 PE=2 SV=4) HSP 1 Score: 274.633 bits (701), Expect = 1.172e-75 Identity = 234/810 (28.89%), Postives = 368/810 (45.43%), Query Frame = 3
Query: 165 LISWIKDSDPCYKPSECDFDRNQFPNVDYLHL---MQALLDLIPNLHNEQDAELNNLVLRTIACIVPFIDKEXXXXXXXXXXXXXYDVQQFFHLKIVDLLSQYFIPFVYGFMTHDKSDDLAEINLLIPAILSNVLDATSEPASWTKVMECIMRFKKNASTDLLMVLAYGSKESLKASLHLLNRYFPPVDI-ASIKAYQSPPYENIRPYTCQYQECSGS-NRDAVIECLDPIICARYNDSPPPMYLCQKCHDSMDRMESPMFIHVNQPADLVSQICDNSNCRFGFMKALYFCFSLDCIKRNDYKPIRLCEDCHQRLH-------ADLH-----EPHIN-HECLKELWITGNPEQTYLVDAIIRLGMEAQPNFQE------KCSRMGL----------DLDVEIVDKSQQDLLQYIGKIFTSLHGLLLLQKTCPYPPTVYHLEHLGRLVAMLFVWVESVDYASHHEAVKIVNPNRQQAVA-WLNKVAAHDFNFYCSCLLPAPPKHARVGHPWNMLTSVLRKDMEILQRITTLAKYGLVPENVWEEIMPHWFHEIKTAIPVSEIKKFKTILLELFDMNSETRP---EYAINFIRKNLESSILKQSQEALVWVQILSYLDVQLEITSLIEMFI-------ELLLNKDDGLSAVDNNIQ----SVFSFPDKDTIHKVTSSGTLSRQNSLHSTPLKSPL----------GATLLSLKTVQDDLSIS--ILMLDVLIKQLTLQKSPSGSVYIADKESISLNV--LLSQILDQSFEGEHV---ELPGFSCPRCQIMNTVFYLVA-LLVDLAIKRQVTL 2393
L S ++D+ P D + +P++DY L + LLDL+P L + Q +L + T C++PF++ + L L T+ TL F H I++ LS F+P + + A +NL ++L + TS P +++EC+M++K+ DLL V+AYG + ++ +L Y+P + +I Y+ Y P CQ+ EC + N+ AV C+DP + D PPP+YLC++C + + S I V P +S IC NC +A+ CFS C R+ +P+R C+ CH H A+ H P IN EC G E V+A+I L EA+ + ++ + ++GL D D + DK Q LL G F L+ L PT E L RLVAM+F W S Y E +V + Q V WL V F+ CLLP P + ARVG W+ S + + E L RI L Y ++ ++VWE IMP W I+T +P +++K+F+ +L ++FD+ P E FI ++AL+W+ +LS LD+ + + LI MF EL + +S + N+ SV S P + H + S Q+ S PL+SP G + D+++++ ILM D+L+KQ+ LQ + + + S+S ++ +++ + + G H + C CQ + L LL LA K + L
Sbjct: 99 LYSVLRDAPSERGPQSRDAQLSDYPSLDYQGLYVTLVTLLDLVPLLQHGQH-DLGQSIFYTTTCLLPFLNDDILSTLPYTMISTLATFPPFLHKDIIEYLSTSFLPMAI-LGSSRREGVPAHVNLSASSMLMIAMQYTSNPVYHCQLLECLMKYKQEVWKDLLYVIAYGPSQVKPPAVQMLFHYWPNLKPPGAISEYRGLQYTAWNPIHCQHIECHNAINKPAVKMCIDPSLSVALGDKPPPLYLCEECSERIAGDHSEWLIDVLLPQAEISAICQKKNCSSHVRRAVVTCFSAGCCGRHGNRPVRYCKRCHSNHHSNEVGAAAETHLYQTSPPPINTREC-------GAEELVCAVEAVISLLKEAEFHAEQREHELNRRRQLGLSSSHHSLDNADFDNKDDDKHDQRLLSQFGIWF-----LVSLCTPSENTPT----ESLARLVAMVFQWFHSTAYMMDDEVGSLVEKLKPQFVTKWLKTVCDVRFDVMVMCLLPKPMEFARVGGYWDKSCSTVTQLKEGLNRILCLIPYNVINQSVWECIMPEWLEAIRTEVPDNQLKEFREVLSKMFDIELCPLPFSMEEMFGFISCRFTGYPSSVQEQALLWLHVLSELDIMVPLQLLISMFSDGVNSVKELANQRKSRVSELAGNLASRRVSVASDPGRRVQHNMLSPFHSPFQSPFRS-PLRSPFRSPFKNFGHPGGRTIDFDCEDDEMNLNCFILMFDLLLKQMELQDD---GITMGLEHSLSKDIISIINNVFQAPWGGSHTCQKDEKAIECNLCQSSILCYQLACELLERLAPKEESRL 886 The following BLAST results are available for this feature:
BLAST of TCONS_00029367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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