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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029363 ID=TCONS_00029363|Name=TCONS_00029363|organism=Clytia hemisphaerica|type=transcript|length=2103bp
CTTTACTCCCTCTTAAAACACTCACAAAAGaTGAAATTGGAATCGATTCC
ATTATTTTTGCAAGTGGTTGAAAATCTTTCGCTTCACTGCCCGAAAACAT
TTTCACAACTTTATCCGATGTGGAAACCACTCCTTGAAATCTACAGTAAT
GAGGTGCCATCGTCAGCTCGGCAGCGCATAAAGGAGTTTGACAACCTACC
GTCCGAAAGGAGAAATGTTCCACGTGGCGATTCATTATCTTACTGGGTGT
CCGATATCCGTAAAAAGTTATGGAATGCTGAACGTCTTACTAAAGGGAAA
CTGGCCCAAGTCGTCAATGTTTGATCCTTCAGTTGATTATACagtgacct
ttatatatccctggaccaagttactcaatcctgtccaaccaaaaatcttt
gatcggagctttttttttaaattggtaccctaaagaaggcactactcaat
agcggggTGAATGCATCGAGAGAGCTAGATCAACTTTTCCTCGAATAGTT
TTGATGATGTAGAGCTGTTAGACGTTAATTTAACATTGCAATAGCTTCTC
CTCGgactcgggtaccaattccaaaaaaactcagATCAAAGAtagcggat
atagcttggtccagggatgtATAAAGATCAGTGGAATTATACAGTTTACA
AAGTTCTttcgattttatagcgattttaccGAACGAAGAGGAAAATTACG
GggttttgtgaaaatctggtacgtCGGCCGCTGTACCTGCCGcacccgtt
gcgtcgtgcctgaACGACTTCTGATAGTAGCTGCTAAGATCTTACCCATT
CATCTCACATCTATCAAAGGTTGATCGTTGTTTTCTAATTTGTATGGATT
GtacattttttattagaaaaaattatataagaacatgaggctttgGGGTA
AAGAagattgagaacattttaagactatttAAAACTTTGCATGCTCTAAA
ACgtgcaatttcttaaaaaattacaCTAAAACAGTCTgataataagaaca
ttttaaaaacatttatagGCTTATaaaccaaaatgttaagagcacCCTTG
AAACACCCGGTATTGTTCTAAGCACTGTATATTATTTTGTAGTATATAAT
GAGCACTATTTAGTTTCGTATCAATTTAGTTAATTTAATGTAGATCACCA
CGTCTTGGTTCAgttatatttattatttaaacAATAAATCTATCAATCCT
GTTTTGAGAGATCGGGTTAGAAAACTCAATCCATTTTACACAAATCTTTC
TGCGCACGTTGATAGGTAtcatcaatacaccttttcgatcgcAGTCGCAC
GGTCAAGCGCGTGtcaatttattatttaatttaccaccccaaaactcgat
ccaatcctttttttttttattataaccTATTTCTTTAATCTAAAGGtgtg
aaaaaaagactggggtGGTTTTaaggtggtaaaacggacaaaaaatgcaa
TTAGCGGacggtcgaaaaagtgtatttgtatatttctttaaccgaataga
ccttttcacaaATTACGTCACTAGCAATGCTTACCTCGTTTCCAAAATAC
TACTACTTCTAATTGATTCTCAGAGGAGTTCATAAGATGTATactctatt
tataaaagtaacaCTCGAAGACTCAGAGGGTTCAAACCATATatttgtaa
agcccgaagggctagatatggtgcttttgctgaaaaagtgtgccgaggtt
agatagaaaatcctacctaagtcacgtgacattacaatagaatttcagcc
aATCAAAAGCTTTGCGGGTTTTCGAAATCAATAGCagtaatattttttcc
gatattcgcttttttttgcttggaagagcttaaagcactccatctaaccc
ttcgggctttataaatctatggttcaAACGCCTTGGTAATTATTTCAAAA
CGATgcagtcgttgcactcaaaataatttatgaaaaggcttATTTCATTA
GcacaaattatattttttatttcattgtacTAGAAGACGATTTATTTACT
ATATCATCACggattattttattattatttaaatatttcaattttcatgt
tttttttatactttttttgtaCCAAAACCTAATGGGATTGATTTGATAGT
gtt Run BLAST on NCBI transcript from alignment at sc0000744:99415..102883- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029363 ID=TCONS_00029363|Name=TCONS_00029363|organism=Clytia hemisphaerica|type=transcript|length=3469bp|location=Sequence derived from alignment at sc0000744:99415..102883- (Clytia hemisphaerica)
CTTTACTCCCTCTTAAAACACTCACAAAAGGTTTGTATTGAAAATAATAG
AATAGGTTGATGCTTCATGATATCTTTGGTCTACCATCTTGGGCTAACCA
CTGTGACCTATTTGTGGGTGAAAGATTGTTTCTATAAAGGACTCTTCCTA
TCTTTAAACTTGGCTCTTTATTTATACACCTACTATAAGGACATTCGATT
TTTACTACATTTACTTCACTACAAGCTTTCTTTACCCGCAAATTAAAAGA
AGATGGTACTGCAAAAAATAAACAAAATAATTGTACGGCAGCCGAGAGTA
TCTGAAGCGGCCTATGATGGGCACGATCGGGATATTTCGGGAGTTTGATT
GTTACCATGGAGAAAACAAGCTCATTTTAATCCCTCAAGATCTGTCGTTA
GCGACTTTTAAATTTTTAGATAAGGGATATGCTTGTCTGGGAATCACAAA
AATCTACATTGAGAATTGGTTCGGCCAAGACCGTCCCAAGGGAAGGGTGC
ACTAATGTTGGGGAATGTCGTCGAGTATGTGCGGACCTCAGAAAACCGAC
AAGATTTCCTATAAATCTGAAAGTGTTTTTTTTAACTTCATGGTTTGGAT
ACTCTTTAGTCCAAAACTCTTACCGTTTGCATTTACCCAGTACCTATTTT
TTGCTAATTACCACCCCACCCTAATCCCCGGGACCCTGACACTGTCTCTG
TCTCCATTTATGATATTTATTAGAACAATGTTGTTTTTTTTTGTCTTTAG
ATGAAATTGGAATCGATTCCATTATTTTTGCAAGTGGTTGAAAATCTTTC
GCTTCACTGCCCGAAAACATTTTCACAAGTATTTTTTGATTACTTCATTT
GTTTTATCGCATGACAGCCACACACTTATTTAAAGGTTTTATTTTTACAT
AAGTGTTCCCGTTTCATATCAAACACATATTTCATATCAGGACAGTGTCT
GTTATATTATGCTGTTATAAACAACGTAATTCTTATTTAAAAACAAAACC
TTTAATTCGTAGAAAAACACTTTACAACCTTTGAAAAGATCGTCAGTACA
CATTATAGTTTTAACGAGGGACTCTTCTTTAGACAGCTGAAATTGTAAGG
CTTGGTGTTTGTAAAAAATCGAAAAATCAACAAACGCGGGCCGTTTATGA
GGCACTTTAGATTAGCAAGTTAGAGTGCAAACTTTTTGCTCAAGACTGTT
CTCAAATTGTTTATCTCCTTTGCAGCTTTATCCGATGTGGAAACCACTCC
TTGAAATCTACAGTAATGAGGTAAGATGATTTTATTTGAAATTAAAGCGG
CCACTATGATGAGATGGAGTTTTGCGGAGACTTTTAACATTAAAATCCGC
CAAATTTAATCCCCGCGAAAATTTATCCCATCAAAGTAATCTCAGATCAA
AGCTTCTCTTTCTTGCATTTTCAATATCAGGTTTCAATAGCTAATATAAG
TAAAGCGGAAGGGTCTCGGGTGATTTTACGGGTGTTTTTATATTACGACA
AATGTTCTCTTCCTTGTAGGTGCCATCGTCAGCTCGGCAGCGCATAAAGG
AGTTTGACAACCTACCGTCCGAAAGGAGAAATGTTCCACGTGGCGATTCA
TTATCTTACTGGGTGTCCGATATCCGTAAAAAGTTATGGAATGCTGAACG
TCTTACTAAAGGGAAACTGGCCCAAGTCGTCAATGTTTGATCCTTCAGTT
GATTATACAGTGACCTTTATATATCCCTGGACCAAGTTACTCAATCCTGT
CCAACCAAAAATCTTTGATCGGAGCTTTTTTTTTAAATTGGTACCCTAAA
GAAGGCACTACTCAATAGCGGGGTGAATGCATCGAGAGAGCTAGATCAAC
TTTTCCTCGAATAGTTTTGATGATGTAGAGCTGTTAGACGTTAATTTAAC
ATTGCAATAGCTTCTCCTCGGACTCGGGTACCAATTCCAAAAAAACTCAG
ATCAAAGATAGCGGATATAGCTTGGTCCAGGGATGTATAAAGATCAGTGG
AATTATACAGTTTACAAAGTTCTTTCGATTTTATAGCGATTTTACCGAAC
GAAGAGGAAAATTACGGGGTTTTGTGAAAATCTGGTACGTCGGCCGCTGT
ACCTGCCGCACCCGTTGCGTCGTGCCTGAACGACTTCTGATAGTAGCTGC
TAAGATCTTACCCATTCATCTCACATCTATCAAAGGTTGATCGTTGTTTT
CTAATTTGTATGGATTGTACATTTTTTATTAGAAAAAATTATATAAGAAC
ATGAGGCTTTGGGGTAAAGAAGATTGAGAACATTTTAAGACTATTTAAAA
CTTTGCATGCTCTAAAACGTGCAATTTCTTAAAAAATTACACTAAAACAG
TCTGATAATAAGAACATTTTAAAAACATTTATAGGCTTATAAACCAAAAT
GTTAAGAGCACCCTTGAAACACCCGGTATTGTTCTAAGCACTGTATATTA
TTTTGTAGTATATAATGAGCACTATTTAGTTTCGTATCAATTTAGTTAAT
TTAATGTAGATCACCACGTCTTGGTTCAGTTATATTTATTATTTAAACAA
TAAATCTATCAATCCTGTTTTGAGAGATCGGGTTAGAAAACTCAATCCAT
TTTACACAAATCTTTCTGCGCACGTTGATAGGTATCATCAATACACCTTT
TCGATCGCAGTCGCACGGTCAAGCGCGTGTCAATTTATTATTTAATTTAC
CACCCCAAAACTCGATCCAATCCTTTTTTTTTTTATTATAACCTATTTCT
TTAATCTAAAGGTGTGAAAAAAAGACTGGGGTGGTTTTAAGGTGGTAAAA
CGGACAAAAAATGCAATTAGCGGACGGTCGAAAAAGTGTATTTGTATATT
TCTTTAACCGAATAGACCTTTTCACAAATTACGTCACTAGCAATGCTTAC
CTCGTTTCCAAAATACTACTACTTCTAATTGATTCTCAGAGGAGTTCATA
AGATGTATACTCTATTTATAAAAGTAACACTCGAAGACTCAGAGGGTTCA
AACCATATATTTGTAAAGCCCGAAGGGCTAGATATGGTGCTTTTGCTGAA
AAAGTGTGCCGAGGTTAGATAGAAAATCCTACCTAAGTCACGTGACATTA
CAATAGAATTTCAGCCAATCAAAAGCTTTGCGGGTTTTCGAAATCAATAG
CAGTAATATTTTTTCCGATATTCGCTTTTTTTTGCTTGGAAGAGCTTAAA
GCACTCCATCTAACCCTTCGGGCTTTATAAATCTATGGTTCAAACGCCTT
GGTAATTATTTCAAAACGATGCAGTCGTTGCACTCAAAATAATTTATGAA
AAGGCTTATTTCATTAGCACAAATTATATTTTTTATTTCATTGTACTAGA
AGACGATTTATTTACTATATCATCACGGATTATTTTATTATTATTTAAAT
ATTTCAATTTTCATGTTTTTTTTATACTTTTTTTGTACCAAAACCTAATG
GGATTGATTTGATAGTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029363-exon-sc0000744-1575043694:102854..102883 | TCONS_00029363-exon-sc0000744-1575043694:102854..102883 | Clytia hemisphaerica | exon |
| TCONS_00029363-exon-sc0000744-1575043694:102056..102133 | TCONS_00029363-exon-sc0000744-1575043694:102056..102133 | Clytia hemisphaerica | exon |
| TCONS_00029363-exon-sc0000744-1575043694:101614..101658 | TCONS_00029363-exon-sc0000744-1575043694:101614..101658 | Clytia hemisphaerica | exon |
| TCONS_00029363-exon-sc0000744-1575043694:99415..101364 | TCONS_00029363-exon-sc0000744-1575043694:99415..101364 | Clytia hemisphaerica | exon |
| TCONS_00029363-exon-sc0000744-1510915933:102854..102883 | TCONS_00029363-exon-sc0000744-1510915933:102854..102883 | Clytia hemisphaerica | exon |
| TCONS_00029363-exon-sc0000744-1510915933:102056..102133 | TCONS_00029363-exon-sc0000744-1510915933:102056..102133 | Clytia hemisphaerica | exon |
| TCONS_00029363-exon-sc0000744-1510915933:101614..101658 | TCONS_00029363-exon-sc0000744-1510915933:101614..101658 | Clytia hemisphaerica | exon |
| TCONS_00029363-exon-sc0000744-1510915933:99415..101364 | TCONS_00029363-exon-sc0000744-1510915933:99415..101364 | Clytia hemisphaerica | exon |
| TCONS_00029363-exon-sc0000744-1491911889:102854..102883 | TCONS_00029363-exon-sc0000744-1491911889:102854..102883 | Clytia hemisphaerica | exon |
| TCONS_00029363-exon-sc0000744-1491911889:102056..102133 | TCONS_00029363-exon-sc0000744-1491911889:102056..102133 | Clytia hemisphaerica | exon |
| TCONS_00029363-exon-sc0000744-1491911889:101614..101658 | TCONS_00029363-exon-sc0000744-1491911889:101614..101658 | Clytia hemisphaerica | exon |
| TCONS_00029363-exon-sc0000744-1491911889:99415..101364 | TCONS_00029363-exon-sc0000744-1491911889:99415..101364 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000744 | supercontig | sc0000744:99415..102883 - |
Blast
The following BLAST results are available for this feature:
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