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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029277 ID=TCONS_00029277|Name=TCONS_00029277|organism=Clytia hemisphaerica|type=transcript|length=1081bp
NGTTCAAAGATGGTTACGACGATCTGTCAGACCTCAACTCAATGCAGaTG
GACTCAGTTCTCGAATGGGAGATGCAATTCCAAGAGAAATACGTTCACAT
CGGGCGCCTTTTGAAACCAGGTGAGAAACATTGCAATTATAAAGCAGAAG
AATCGGAGGACGAAAGCAGAGGTGGTACACCAAACAAAAAAGAAGACTGA
ACGAACATGCGAATATAAGGAATATGCGAAAATCGAAAACGAAAATGAAT
CAACTTTACGGAACGTTACAATTTATGATTTCCAATTCCAACATTCAGTA
AGAGATTTTTTTATAGAACTTTATAGAGAACTGGTCTCTTGTTTATAAGG
TCAGAGAGATTTTTATCCTTATTTAAAAGGAACCTTGATTCCAGCGATGG
CTTGATTGAAGATGGTCAATCGGTTCTAATAGTTCAACTACAAACTTCGG
GTTCAAATTACCCAAATGTTCAAcgatattttttaatgaattattatcaa
aatgaatgacaatgattttattgaaagtCTGACAAAATTGTGTGTTGGTA
ATAATGGTGAAGGAGATAATGGTTGATTGGTTTCCTAGCTGgaacataac
gttgtttcagcgTTCATTTTACGTTCACAATATGcttataacgttagatg
aacgttgaaacaacgtcgtgtacCAGCTTGGCTCTGTGttctttttcaca
aatttaGTTCCTTTTCTCAAAAGCTTTGAATCTCACAAACGTATTCTTAG
CTTGATTTATTCTTTTCACGAGAACAGCAAGGTTAAGTATCGATNAGCTT
TGAATCTCACAAACGTATTCTTAGCTTGATTTATTCTTTTCACGAGAACA
GCAaggttaagtatcgatagaTGTTTTGCAAGAACCTGTTTCCTCTAGCT
TTCCTTCACACAACGGCACTTTTCCACGGGCTAATGGTGGAAAATAAGGT
AGGCTTAAAGTCCCATAGCGTGGACGAAGGCTAGAGGAGACATGCTCGTC
GTCGCAATATTCATCGATATTTAAGCTCTCTTTTAATAGCTTAATTTGTG
AAAGGGATGAGAATTAACTGGCAGAAAGGTT Run BLAST on NCBI transcript from alignment at sc0000735:79255..82350- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029277 ID=TCONS_00029277|Name=TCONS_00029277|organism=Clytia hemisphaerica|type=transcript|length=3096bp|location=Sequence derived from alignment at sc0000735:79255..82350- (Clytia hemisphaerica)
NGTTCAAAGATGGTTACGACGATCTGTCAGACCTCAACTCAATGCAGGTG
AATGTTTTGAATATTTGCGAAGGTTAGGGAGTGCTAGAGTCGGAAAGCCC
AGATGAGATAGGGTTTTTGTAATAATTGGTCATTGGAAGTAATAAAAATG
ACGCATTCTTTAAGTAACAAAATTGAATTATTGCTGGTTAACGACCAACC
AAATCAAAAAAGAGCTTGTAAAAACTCCATCTCGTCCCGGACAGCCTAGG
TGGGCGCAACCCCGGGCCCATGAACTATTATTTTTCAGCTATCTCTATCC
ATCTCTAGCCAGTGTCACTTAACGTGTCAATGAATGTTGCCCTTTCCTCT
TTTTGATCTCGCTTCGTGTTGGGTTCCACAAGACAAACTTTAAAGCCTCT
TCTTGATTATCTATATTCGAGGCCGAATTTTAGAAAAGAATATCTCAAAG
AGACCAGAGAAAACTAACCCTTAGAATCTTCACTCCCCCGGAATAAAGGG
AAATATGGTTCATACTATGACCTAAAATATACCGCGGTGTCGTTTTAATA
AGGACAGTAAAGCAATTTACAGCTTTTGACTGGAGTGGTTTTAGGTATGT
TTACGAGAAATAACATTTTGAAATTGGTACGTGGTTTACGTAATAATTTT
CTCTTAAAGCAATATAGTTTCTTAAAACAGACACCATCTTTCGTTGAAGA
TAAATTGGCACATGTTTGAAGTTTTAAACGACCATTTGTCTAGTCACGTC
TAAATTTTTTCATTTTTCCTTCTTCTTTTTTTGGATTTTAATGTGATATC
TTATTGGATATTGTAATATTTTGTTGTAATCAGATAAGCTTTTCTTAAGA
GGAGAGGATCACTCTATCTTCTTCCCATGCTATATAAATGTTCATTCTTA
AAAATGACGTGTCGTATTTTCAGACTCCTCAATCAGCTTGTATATTATGA
CATTAAATTGCTTAATCCATTTTGAAATGATCAAGAAAAAAATCTTCACT
GGTATTATCTTTAAGCAATATTTCGAAATAGAGAATCTTCTTCTTATGGT
CTTTAGTTGTTGTGAAATTAAAAACTTTTAAACTGATTTTTTTGGACCCG
TCAATTTCCACATTTTGTCTTCGACGATGTGCAATGATTACTTCTCTTTC
AATTTTGAAAAATAATTTTTCAGGATGGTGTGTTTTTACCGAATAAACGC
CCTTCTTCTTTTAAACATCTCCCTCAAAAAAACGCCCTTCCGCCCTTCGT
CNACGCCCTTCTTCTTTTAAACATCTCCCTCAAAAAAACGCCCTTCCGCC
CTTCGTCAAAGAACGCTCTCAAATAAACGCATCCCCTATTTGAAACAGGT
TGCGGTAAGGCAGTATGATATTCAAATTGATTTTGACCGGTTTCTGCAGC
TCTAATAAATTTGAATCTAAAAATAATGAGAAGATAAAATAAGGTTCCAA
TTCACACTATTAAACTGGCCTTGGTTGTAAATAATTTAATAAACGCCCCC
TCGAATAAACGCCCCTCCCTCCTCCTTTCTAGCATTTCTGATTATTTGTT
TTATGAGATAGTCTTTGAGGTAATACTTATCCATTTAAAAAACATTGCGT
TAGTATATCGACTAAGGGTTTCGAAAATAAATTGATGTCCTCTTACTTAA
TGGCGCTTTCACTATCGGGAAAAGTATTTTGACGAAATCTCTCTCTATAG
CTTGAAACTGTTCTACTGTTCATTCCCAATATTTCTGTAATTCGAATGAA
AACAATGGAAACCTTATACCTTATCGGGGAAAACTTCGTCGGGGAAAATT
TTCGTCGGTGAAAATTTTCGTCGGGGAAAAATTCGTCACTTGCTGGTAGT
TGGTAAATGCATTAAGGCCGGGGAAAATTTTCGTCAGTTGTCCAAAATTT
CGTCACTTTTCCCCGACGAAGTTTTCCCCGATAAGGTAATAAACTCCTCC
CGATATTCAAACCCTGCTCTCATTCGAGAAAATCGCGGTCCCTTGAAAAT
TAAATTAGAGAAATAAGAATATGAATTAAATATGAGAGTTCGATCCTTTT
TTTAACTTTCAGATGGACTCAGTTCTCGAATGGGAGATGCAATTCCAAGA
GAAATACGTTCACATCGGGCGCCTTTTGAAACCAGGTGAGAAACATTGCA
ATTATAAAGCAGAAGAATCGGAGGACGAAAGCAGAGGTGGTACACCAAAC
AAAAAAGAAGACTGAACGAACATGCGAATATAAGGAATATGCGAAAATCG
AAAACGAAAATGAATCAACTTTACGGAACGTTACAATTTATGATTTCCAA
TTCCAACATTCAGTAAGAGATTTTTTTATAGAACTTTATAGAGAACTGGT
CTCTTGTTTATAAGGTCAGAGAGATTTTTATCCTTATTTAAAAGGAACCT
TGATTCCAGCGATGGCTTGATTGAAGATGGTCAATCGGTTCTAATAGTTC
AACTACAAACTTCGGGTTCAAATTACCCAAATGTTCAACGATATTTTTTA
ATGAATTATTATCAAAATGAATGACAATGATTTTATTGAAAGTCTGACAA
AATTGTGTGTTGGTAATAATGGTGAAGGAGATAATGGTTGATTGGTTTCC
TAGCTGGAACATAACGTTGTTTCAGCGTTCATTTTACGTTCACAATATGC
TTATAACGTTAGATGAACGTTGAAACAACGTCGTGTACCAGCTTGGCTCT
GTGTTCTTTTTCACAAATTTAGTTCCTTTTCTCAAAAGCTTTGAATCTCA
CAAACGTATTCTTAGCTTGATTTATTCTTTTCACGAGAACAGCAAGGTTA
AGTATCGATNAGCTTTGAATCTCACAAACGTATTCTTAGCTTGATTTATT
CTTTTCACGAGAACAGCAAGGTTAAGTATCGATAGATGTTTTGCAAGAAC
CTGTTTCCTCTAGCTTTCCTTCACACAACGGCACTTTTCCACGGGCTAAT
GGTGGAAAATAAGGTAGGCTTAAAGTCCCATAGCGTGGACGAAGGCTAGA
GGAGACATGCTCGTCGTCGCAATATTCATCGATATTTAAGCTCTCTTTTA
ATAGCTTAATTTGTGAAAGGGATGAGAATTAACTGGCAGAAAGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029277-exon-sc0000735-1575043694:82304..82350 | TCONS_00029277-exon-sc0000735-1575043694:82304..82350 | Clytia hemisphaerica | exon |
| TCONS_00029277-exon-sc0000735-1575043694:79255..80288 | TCONS_00029277-exon-sc0000735-1575043694:79255..80288 | Clytia hemisphaerica | exon |
| TCONS_00029277-exon-sc0000735-1510915933:82304..82350 | TCONS_00029277-exon-sc0000735-1510915933:82304..82350 | Clytia hemisphaerica | exon |
| TCONS_00029277-exon-sc0000735-1510915933:79255..80288 | TCONS_00029277-exon-sc0000735-1510915933:79255..80288 | Clytia hemisphaerica | exon |
| TCONS_00029277-exon-sc0000735-1491911889:82304..82350 | TCONS_00029277-exon-sc0000735-1491911889:82304..82350 | Clytia hemisphaerica | exon |
| TCONS_00029277-exon-sc0000735-1491911889:79255..80288 | TCONS_00029277-exon-sc0000735-1491911889:79255..80288 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000735 | supercontig | sc0000735:79255..82350 - |
Blast
The following BLAST results are available for this feature:
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