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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029191 ID=TCONS_00029191|Name=TCONS_00029191|organism=Clytia hemisphaerica|type=transcript|length=1808bp
tttttagattATTATAGTTGTATATGTAGGTTCGGCCTTAACAATTGCGC
AAACTCATTGCTATCGATGTTACTTATTTGACTTATTGACCTTTTGAAGG
TTTGGTATCTCGGTGGTGTCAAAAAGTACTGGTCCTGACAAGGGGCGAAT
TGGTATATAAAACAGTGCACCGAATTTAGACTTTATATAAACTCATTGGA
TGTGGAGACTAATACAAGATATTTTACAATCAATATTCAGACGAGGAATC
TCCTGCTCAAACCGAAAGAAGTTTTTGACAATaTGGGTTTGATTCGCACT
TCAACAGCTTTTTTTGCTTTGGTTGTATTGTTTGTCAACACGAAAGCTAC
ATCACCAGATCCGTCATGCAACATCGACGCCGTACTTTACTCCACTCAAA
ATGACGACATTTACTTCTTTAAAGACAACATGTACGCCAGATGGAACGTC
AAGTCTGACCGGATGTATTATTACGGGCAAACGAAAGACCTGATCGACGG
TTTAAAGACACCTATAGACGCAGCCATTGAGACAAATCTTTATGGTactc
aacaaattttttttttcagcggCAATCAAGTTCAAATTTACGATCATTTT
CACAAAAGCCCACTGAATACAATTGATTTGAAAGACTTTGCTGTTGGTCT
ACCAGAATCAATCGATGCTACCTTCTTCATGCAGAGTACCTTTTACTTCT
TTAAAGATTACCATATTTACTTCATGTTTGTCGCAGAGAAAAAAGTGCAT
GGACCATTCAATATCACTAATTTTTTTCCTAATCTCAAAGGTCCTGTAAA
TGCGGCTGTATTGAACACTTTCCATGAAGGCCGTGATACTGCTTACTTAT
TTAGCGGTCAGAATTATTAtctttttgctgagtcagcggAAAAGGTCATT
CCTATCGAAAAAAGATGGAAAGGACTTTTAAATTCACCACTCTTTGCCAA
ATGTGAAATCGATTGCAATACTGTCACCATCTCAAACGATGATTGGAAAT
TTGGGTCAATTTCGTATAACATGTCAATGAATGACACCTATACTCGCTCT
ATTGGCATCAAAAACTTCACCAAGTACACAACAGACCAGGTCCAGATTGA
TTACAATTTCTCATACAACGAATACTTCTCCTTCTTACAAAGCGGTGGCG
TGAACGTCAAACAAAACACATCTTTCGTTGTCACAACACCAGATTTCTCC
AATATCCGTGATTCCATCAATATCACCAAATTACCAAGTGGTGACAAGCA
TTATTATTTCAGCTACGGAATAAAAACAGAACGCGAAGACACGATCAAAG
ATCACATGCTTTGCACCAGTGTTATTGGCGATCGAAGAAAATGTACAGTT
TTCTTGAATCAATACAACATCCAAGTTCCATATACCATCGTGTGGAATCA
TAAGGTTAAGAGTGCCTCGTGCAAATCTCATGGTGTCACTGACATTTTAA
TTGCACATATCGGTAAAATCAACGAGCCTGCCACCAAGGATATGAACGAT
CGAATTGAACTCTAAGCTACGTGATAGGGATTgtacttttgtctttttta
atgtGTTTTAGAGTAacattaacttttttatttgaatgattgtaaaatga
aaacaaacaatattaTTATAGAATAGTTTTTTGAGAACAGAAAACCACCC
ctgggtacttaggcaagtggAGGGCacgggtatgtgccacccttaaggcT
CCCTTTTTTGGACCTTCAAAGTCCCACTATGGGTCGCAAAAATCACAATT
TCCAttttaagcccccccccctaaggATCATAAAAGAAGTGAAATTATCA
ATATTTAC Run BLAST on NCBI protein sequence of TCONS_00029191-protein >TCONS_00029191-protein ID=TCONS_00029191-protein|Name=TCONS_00029191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp
MGLIRTSTAFFALVVLFVNTKATSPDPSCNIDAVLYSTQNDDIYFFKDNM
YARWNVKSDRMYYYGQTKDLIDGLKTPIDAAIETNLYGTQQIFFFSGNQV
QIYDHFHKSPLNTIDLKDFAVGLPESIDATFFMQSTFYFFKDYHIYFMFV
AEKKVHGPFNITNFFPNLKGPVNAAVLNTFHEGRDTAYLFSGQNYYLFAE
SAEKVIPIEKRWKGLLNSPLFAKCEIDCNTVTISNDDWKFGSISYNMSMN
DTYTRSIGIKNFTKYTTDQVQIDYNFSYNEYFSFLQSGGVNVKQNTSFVV
TTPDFSNIRDSINITKLPSGDKHYYFSYGIKTEREDTIKDHMLCTSVIGD
RRKCTVFLNQYNIQVPYTIVWNHKVKSASCKSHGVTDILIAHIGKINEPA
TKDMNDRIEL Run BLAST on NCBI transcript from alignment at sc0000728:147492..151978+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029191 ID=TCONS_00029191|Name=TCONS_00029191|organism=Clytia hemisphaerica|type=transcript|length=4487bp|location=Sequence derived from alignment at sc0000728:147492..151978+ (Clytia hemisphaerica)
tttttagattATTATAGTTGTATATGTAGGTTCGGCCTTAACAATTGCGC
AAACTCATTGCTATCGATGTTACTTATTTGACTTATTGACCTTTTGAAGG
TTTGGTATCTCGGTGGTGTCAAAAAGTACTGGTCCTGACAAGGGGCGAAT
TGGTATATAAAACAGTGCACCGAATTTAGACTTTATATAAACTCATTGGA
TGTGGAGACTAATACAAGATATTTTACAATCAATATTCAGACGAGGAATC
TCCTGCTCAAACCGAAAGAAGTTTTTGACAATGTAAGTCTACCATTAATT
TAtctttcatttataaaatttatGCACTTGATTGGGGAAATTATGACGCC
TTTTAATATTCACAGACAAACTTCGATGGGCAGATTCTTttctagcgagc
acctcactaaaaaccgggatttttcatcacatttcttagtgagttccact
ttaacgattttcgaaaaatagaagccttttaagtgctttgacgcaaattc
gattattagcgagattatgtatctggaattctctacggctacggttaaag
tggcgagggaaatggcgagtaaggcaagtaatggcgggtgaaagcaagNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNggtgaaagcaagttcgatatttgacgtacggca
ttatgtcgactttgcttatacggtgttttggtgtttttcccgtacagagc
aaagtagacaacgataTGTCGCCTTTGTTGACGACCCGTAcaggcagccc
cgcaaccgtaaccgtagaatatctccgatacataatctcgctattttgct
actgcaggagcctCGGAAGTTAgggtgacgtcaaaaaatcgagcCCGAAA
aaccgggctcaaaacattggaaaaagtcgcaaagtggaatagacgttaat
tgcgtaaaaaacgcgggtgacgtctagtataggctaattctttttggcca
aaatgtttaatttgtcACTCACATTTATTCGGCACATATTATAGCATTAG
gctgtctaaatttatgctagGTGACTAAATCCTAATCGAACACGATTGAG
AAGGACCACACCTTGATTGTAAAAAAGGAGAAGGTTTGGGCCTTAGAAAC
TCgaagattgcttttttgaaggtaGATACTGAGAGCATATCTTTTATACG
AACACCCAGAATATTTCACTGTGATATGCAGTAAGGATAAAAAGAATTTT
GGAAACGTTCAGTTTTTGCGTTTCTGCGCAGTTTGCTGTGTTTTAGCTAC
CAACACAAGTTTACCTAAGGCACAAAGATAATAAAACAGCtaactttgaa
tattttcacGGTGTTCCATGCTATTCAAagttaatgttaattttttcaca
tttttcagaTGGGTTTGATTCGCACTTCAACAGCTTTTTTTGCTTTGGTT
GTATTGTTTGTCAACACGAAAGCTACATCACCAGATCCGTCATGCAACAT
CGACGCCGTACTTTACTCCACTCAAAATGACGACATTTACTTCTTTAAAG
ACAACATGTACGCCAGATGGAACGTCAAGTCTGACCGGATGTATTATTAC
GGGCAAACGAAAGACCTGATCGACGGTTTAAAGACACCTATAGACGCAGC
CATTGAGACAAATCTTTATGGTactcaacaaattttttttttcagcggCA
ATCAAGTTCAAATTTACGATCATTTTCACAAAAGCCCACTGAATACAATT
GATTTGAAAGACTTTGCTGTTGGTCTACCAGAATCAATCGATGCTACCTT
CTTCATGCAGAGTACCTTTTACTTCTTTAAAGATTACCATATTTACTTCA
TGTTTGTCGCAGAGAAAAAAGTGCATGGACCATTCAATATCACTAATTTT
TTTCCTAATCTCAAAGGTCCTGTAAATGCGGCTGTATTGAACACTTTCCA
TGAAGGCCGTGATACTGCTTACTTATTTAGCGGTCAGAATTATTAtcttt
ttgctgagtcagcggAAAAGGTCATTCCTATCGAAAAAAGATGGAAAGGA
CTTTTAAATTCACCACTCTTTGCCAAATGTGAAATCGATTGCAATACTGT
CACCATCTCAAACGATGATTGGAAATTTGGGTCAATTTCGTATAACATGT
CAATGAATGACACCTATACTCGCTCTATTGGTAAGATACAATTGTGAGGT
GTCTTTTAAACCCTTACGTTTTGTCAAAAGCCTAAGAAATCTTCTTGTAC
TATATTGATAATCCCTAGTGTTCCATCATTGAGCTTTATATATACTCTGG
AGAAAATTCTTCAGCCCTGCCTGCCGAAATCTTTGTAGTACCATTACTCG
ATAGCTATGCGTATAAATGAATAAACACTGATCTGCTTTTTCTTTGATAG
AGCGCCGTTTGACGCCAGTCAAAGCTTTACCACTAAAACGGGTTCTTTGT
GAGtgccactttaaaaaaaaactcccaTCAAAGATGAAGGATAAGACTTT
ATTTAGAACCAGTGGTTTGTCTGCTGTCTGGGGACGATAATCCTTCTTTA
AGGGACAtaaaaagtactgacgaaatttgggAATAAACCGTACGCAGCGG
GACACAAAATCAAAACGAATGTCACATATAAataaacaatcaaaacaaat
atggctgattttgattgtttcgattgatttacaagttttttttggtAACC
CGATTTTAATtattctctttaatgacacatAGTTCGcgtaatgtttacat
ttttctactTCTATGTTCCTTTAAATACTTAAAAGAATTATCACTTTTTC
GTCAGCTCAGAAACTCTTTTGCaatagttctatttatactgagacgatta
ccttaagtggataaattttggcgggattaaaattggcgaattttggcaaa
attaaattcccgccaaattttacgaaattaaTTTATCCCTAAATTAAGTC
CACGCCAAAATTTTTCCATTTAAGGTAGTTTACctgagacgagcaattta
gaaaattagcattatggaggagtgtactttccatgcatgtttcaataaat
aggatctcctccacagatcacattttacaaactactcgtcCCAGacgatt
ttttcatttcagtatAGATGGAGCTAATGATCTTTATAGTTTGAATTAAC
TTCTTTTTCTCCTTTGTAAAATTAAATTACGAGACAATGAACAAAGCCAA
TGGTAATTTAACTATCGTATTTTCCACTTTCAGGCATCAAAAACTTCACC
AAGTACACAACAGACCAGGTCCAGATTGATTACAATTTCTCATACAACGA
ATACTTCTCCTTCTTACAAAGCGGTGGCGTGAACGTCAAACAAAACACAT
CTTTCGTTGTCACAACACCAGATTTCTCCAATATCCGTGATTCCATCAAT
ATCACCAAATTACCAAGTGGTGACAAGCATTATTATTTCAGCTACGGAAT
AAAAACAGAACGCGAAGACACGATCAAAGATCACATGCTTTGCACCAGTG
TTATTGGCGATCGAAGAAAATGTACAGTTTTCTTGAATCAATACAACATC
CAAGTTCCATATACCATCGTGTGGAATCATAAGGTTAAGAGTGCCTCGTG
CAAATCTCATGGTGTCACTGACATTTTAATTGCACATATCGGTAAAATCA
ACGAGCCTGCCACCAAGGATATGAACGATCGAATTGAACTCTAAGCTACG
TGATAGGGATTgtacttttgtcttttttaatgtGTTTTAGAGTAacatta
acttttttatttgaatgattgtaaaatgaaaacaaacaatattaTTATAG
AATAGTTTTTTGAGAACAGAAAACCACCCctgggtacttaggcaagtggA
GGGCacgggtatgtgccacccttaaggcTCCCTTTTTTGGACCTTCAAAG
TCCCACTATGGGTCGCAAAAATCACAATTTCCAttttaagcccccccccc
taaggATCATAAAAGAAGTGAAATTATCAATATTTAC Coding sequence (CDS) from alignment at sc0000728:147492..151978+ >TCONS_00029191 ID=TCONS_00029191|Name=TCONS_00029191|organism=Clytia hemisphaerica|type=CDS|length=2466bp|location=Sequence derived from alignment at sc0000728:147492..151978+ (Clytia hemisphaerica)
aTGGGTTTGATTCGCACTTCAACAGCTTTTTTTGCTTTGGTTGTATTGTT
TGTCAACACGAAAGCTACATCACCAGATCCGTCATGCAACATCGACGCCG
TACTTTACTCCACTCAAAATGACGACATTTACTTCTTTAAAGACAACATG
TACGCCAGATGGAACGTCAAGTCTGACCGGATGTATTATTACGGGCAAAC
GAAAGACCTGATCGACGGTTTAAAGACACCTATAGACGCAGCCATTGAGA
CAAATCTTTATGGTactcaacaaattttttttttcagcggCAATCAAGTT
CAAATTTACGATCATTTTCACAAAAGCCCACTGAATACAATTGATTTGAA
AGACTTTGCTGTTGGTCTACCAGAATCAATCGATGCTACCTTCTTCATGC
AGAGTACCTTTTACTTCTTTAAAGATTACCATATTTACTTCATGTTTGTC
GCAGAGAAAAAAGTGCATGGACCATTCAATATCACTAATTTTTTTCCTAA
TCTCAAAGGTCCTGTAAATGCGGCTGTATTGAACACTTTCCATGAAGGCC
GTGATACTGCTTACTTATTTAGCGGTCAGAATTATTAtctttttgctgag
tcagcggAAAAGGTCATTCCTATCGAAAAAAGATGGAAAGGACTTTTAAA
TTCACCACTCTTTGCCAAATGTGAAATCGATTGCAATACTGTCACCATCT
CAAACGATGATTGGAAATTTGGGTCAATTTCGTATAACATGTCAATGAAT
GACACCTATACTCGCTCTATTGGCATCAAAAACTTCACCAAGTACACAAC
AGACCAGGTCCAGATTGATTACAATTTCTCATACAACGAATACTTCTCCT
TCTTACAAAGCGGTGGCGTGAACGTCAAACAAAACACATCTTTCGTTGTC
ACAACACCAGATTTCTCCAATATCCGTGATTCCATCAATATCACCAAATT
ACCAAGTGGTGACAAGCATTATTATTTCAGCTACGGAATAAAAACAGAAC
GCGAAGACACGATCAAAGATCACATGCTTTGCACCAGTGTTATTGGCGAT
CGAAGAAAATGTACAGTTTTCTTGAATCAATACAACATCCAAGTTCCATA
TACCATCGTGTGGAATCATAAGGTTAAGAGTGCCTCGTGCAAATCTCATG
GTGTCACTGACATTTTAATTGCACATATCGGTAAAATCAACGAGCCTGCC
ACCAAGGATATGAACGATCGAATTGAACTCTAAaTGGGTTTGATTCGCAC
TTCAACAGCTTTTTTTGCTTTGGTTGTATTGTTTGTCAACACGAAAGCTA
CATCACCAGATCCGTCATGCAACATCGACGCCGTACTTTACTCCACTCAA
AATGACGACATTTACTTCTTTAAAGACAACATGTACGCCAGATGGAACGT
CAAGTCTGACCGGATGTATTATTACGGGCAAACGAAAGACCTGATCGACG
GTTTAAAGACACCTATAGACGCAGCCATTGAGACAAATCTTTATGGTact
caacaaattttttttttcagcggCAATCAAGTTCAAATTTACGATCATTT
TCACAAAAGCCCACTGAATACAATTGATTTGAAAGACTTTGCTGTTGGTC
TACCAGAATCAATCGATGCTACCTTCTTCATGCAGAGTACCTTTTACTTC
TTTAAAGATTACCATATTTACTTCATGTTTGTCGCAGAGAAAAAAGTGCA
TGGACCATTCAATATCACTAATTTTTTTCCTAATCTCAAAGGTCCTGTAA
ATGCGGCTGTATTGAACACTTTCCATGAAGGCCGTGATACTGCTTACTTA
TTTAGCGGTCAGAATTATTAtctttttgctgagtcagcggAAAAGGTCAT
TCCTATCGAAAAAAGATGGAAAGGACTTTTAAATTCACCACTCTTTGCCA
AATGTGAAATCGATTGCAATACTGTCACCATCTCAAACGATGATTGGAAA
TTTGGGTCAATTTCGTATAACATGTCAATGAATGACACCTATACTCGCTC
TATTGGCATCAAAAACTTCACCAAGTACACAACAGACCAGGTCCAGATTG
ATTACAATTTCTCATACAACGAATACTTCTCCTTCTTACAAAGCGGTGGC
GTGAACGTCAAACAAAACACATCTTTCGTTGTCACAACACCAGATTTCTC
CAATATCCGTGATTCCATCAATATCACCAAATTACCAAGTGGTGACAAGC
ATTATTATTTCAGCTACGGAATAAAAACAGAACGCGAAGACACGATCAAA
GATCACATGCTTTGCACCAGTGTTATTGGCGATCGAAGAAAATGTACAGT
TTTCTTGAATCAATACAACATCCAAGTTCCATATACCATCGTGTGGAATC
ATAAGGTTAAGAGTGCCTCGTGCAAATCTCATGGTGTCACTGACATTTTA
ATTGCACATATCGGTAAAATCAACGAGCCTGCCACCAAGGATATGAACGA
TCGAATTGAACTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029191-exon-sc0000728-1491911889:147492..147773 | TCONS_00029191-exon-sc0000728-1491911889:147492..147773 | Clytia hemisphaerica | exon |
| TCONS_00029191-exon-sc0000728-1510915933:147492..147773 | TCONS_00029191-exon-sc0000728-1510915933:147492..147773 | Clytia hemisphaerica | exon |
| TCONS_00029191-exon-sc0000728-1575043694:147492..147773 | TCONS_00029191-exon-sc0000728-1575043694:147492..147773 | Clytia hemisphaerica | exon |
| TCONS_00029191-exon-sc0000728-1491911889:149400..150171 | TCONS_00029191-exon-sc0000728-1491911889:149400..150171 | Clytia hemisphaerica | exon |
| TCONS_00029191-exon-sc0000728-1510915933:149400..150171 | TCONS_00029191-exon-sc0000728-1510915933:149400..150171 | Clytia hemisphaerica | exon |
| TCONS_00029191-exon-sc0000728-1575043694:149400..150171 | TCONS_00029191-exon-sc0000728-1575043694:149400..150171 | Clytia hemisphaerica | exon |
| TCONS_00029191-exon-sc0000728-1491911889:151225..151978 | TCONS_00029191-exon-sc0000728-1491911889:151225..151978 | Clytia hemisphaerica | exon |
| TCONS_00029191-exon-sc0000728-1510915933:151225..151978 | TCONS_00029191-exon-sc0000728-1510915933:151225..151978 | Clytia hemisphaerica | exon |
| TCONS_00029191-exon-sc0000728-1575043694:151225..151978 | TCONS_00029191-exon-sc0000728-1575043694:151225..151978 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000728 | supercontig | sc0000728:147492..151978 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018487 | Hemopexin-like_repeat |
| IPR000585 | Hemopexin-like_dom |
Blast
The following BLAST results are available for this feature:
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