TCONS_00029061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029061
Unique NameTCONS_00029061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length865

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029061 ID=TCONS_00029061|Name=TCONS_00029061|organism=Clytia hemisphaerica|type=transcript|length=865bp
NNAACACCAGCTCAGCTTCGGCATCTTCATAGTCTCCCAGAGGCCAATTG
TAGACCCACATGCTAATTAGGACTGAGGAATTACCCAAGGAGCAATATGC
AAAATTCCAGCCAGATCGAATCACTCTAAAGTATCCTGTAAACTAAGTAA
TGGTGTTATATATTGGCGTTATGGGGTGTGACAACACCCTTGAATCATAt
cacattgaaaatgaagtAAAACTAACCCAGGGATTAACCCAAAGACCATG
ATTGAATTGGTGACCCTAAAACTAAattgcaaaattgaaaaatggggaaa
gtGAATTCACCCAAAGCGCAATGTGCTCGAAATTGAAGCGGATTCAGACA
ATTTCGaggtctccagcctgcccaCATTTTTGTAAGTTTAGGACAAAAAC
CAGTAACCCCACCCCCAAAATCCAATAGAGTATGAAGCACACCCAGGGAT
ACACTCAAGAACTTGTGTGCAACATTCGCACCAATCAACCTCTAGGGGGA
ATAACAAAACACTCCTAGGATTCCAAGGAACAAGCATGCAAAATATTAAC
TACTTCATAGTATTGACCAAGGTATGCCAGAACCTATGGAGTCGTCCCTC
CCATCTAAATTCACTAAATTCAATAATGCCCCAAGGACTCACTCAAGGAA
CTACATGTACAAGACTTTAGCAAAATCAGCCAACTCCCAAGAAGAATGAA
GGAGAATGCCCCAAGGACTCACCAAGGAGCTTAAATGTACAAACTTTAGC
AAAATCAGCCACCNAAGCGGGCGTATGTTTGATGCGTAAGGGCGTAAGAG
CCGTGATGGGCGTAGCGTTAGTCGCTTCCTCGAAATTAACATGAGCTAAT
GCTTAGCTCTAAATA
Run BLAST on NCBI

transcript from alignment at sc0000723:13351..14215

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029061 ID=TCONS_00029061|Name=TCONS_00029061|organism=Clytia hemisphaerica|type=transcript|length=865bp|location=Sequence derived from alignment at sc0000723:13351..14215 (Clytia hemisphaerica)
TATTTAGAGCTAAGCATTAGCTCATGTTAATTTCGAGGAAGCGACTAACG
CTACGCCCATCACGGCTCTTACGCCCTTACGCATCAAACATACGCCCGCT
TNGGTGGCTGATTTTGCTAAAGTTTGTACATTTAAGCTCCTTGGTGAGTC
CTTGGGGCATTCTCCTTCATTCTTCTTGGGAGTTGGCTGATTTTGCTAAA
GTCTTGTACATGTAGTTCCTTGAGTGAGTCCTTGGGGCATTATTGAATTT
AGTGAATTTAGATGGGAGGGACGACTCCATAGGTTCTGGCATACCTTGGT
CAATACTATGAAGTAGTTAATATTTTGCATGCTTGTTCCTTGGAATCCTA
GGAGTGTTTTGTTATTCCCCCTAGAGGTTGATTGGTGCGAATGTTGCACA
CAAGTTCTTGAGTGTATCCCTGGGTGTGCTTCATACTCTATTGGATTTTG
GGGGTGGGGTTACTGGTTTTTGTCCTAAACTTACAAAAATGtgggcaggc
tggagacctCGAAATTGTCTGAATCCGCTTCAATTTCGAGCACATTGCGC
TTTGGGTGAATTCactttccccatttttcaattttgcaatTTAGTTTTAG
GGTCACCAATTCAATCATGGTCTTTGGGTTAATCCCTGGGTTAGTTTTac
ttcattttcaatgtgaTATGATTCAAGGGTGTTGTCACACCCCATAACGC
CAATATATAACACCATTACTTAGTTTACAGGATACTTTAGAGTGATTCGA
TCTGGCTGGAATTTTGCATATTGCTCCTTGGGTAATTCCTCAGTCCTAAT
TAGCATGTGGGTCTACAATTGGCCTCTGGGAGACTATGAAGATGCCGAAG
CTGAGCTGGTGTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016527XLOC_016527Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029061-exon-sc0000723-1491911889:13351..14215TCONS_00029061-exon-sc0000723-1491911889:13351..14215Clytia hemisphaericaexon
TCONS_00029061-exon-sc0000723-1510915933:13351..14215TCONS_00029061-exon-sc0000723-1510915933:13351..14215Clytia hemisphaericaexon
TCONS_00029061-exon-sc0000723-1575043694:13351..14215TCONS_00029061-exon-sc0000723-1575043694:13351..14215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000723supercontigsc0000723:13351..14215 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.47705	4.19112	3.3093	1.8875	18.8297	18.0242	16.5816	22.0908	4.6557	14.3785	7.17742	1.3632	5.96275	4.87408	5.89614	13.8619	10.3101	7.22239	4.13058	6.07562	3.84909	4.37449	5.09914	6.2699	3.3661	7.29889	10.3231	10.0587	9.91348	5.53625
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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