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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028821 ID=TCONS_00028821|Name=TCONS_00028821|organism=Clytia hemisphaerica|type=transcript|length=1007bp
CTCTTGACCAGGCGTTGCAAAACTATATCAAAGAGTTTCTATATGTTCAA
CAGAAATATGCTCACTTAAATATAAGTCCATCATCGGAAGCAGAAAAGTT
CTGGGATACTGTATCAAGAGAGAGTATTTTTATGAGCGGTAGTGCTGTAG
AAGTTGGCAGTATTTGTCGAACATTACGAAGTAACCGGatagaaattgaa
tttgattcaATGATCGAGCGAGGGGTACTTCAAAAGGAATACGAAAGGGA
TTTTCTCATCCCAATTGAGGGACACTCGGGATTTTTTCATTGTCGTAGAG
ATATGAAAGAAAATAGAAGATACGTTGCTGATGTTGTATACAAAATATAT
ACGGATGCCGGAAAGTATATAAAGATGCCAAGCCATGCAGCTAATTTTAA
AGAACAGAATAGATGCTTTCTTTATGCAGCCCTGGTTAATCGAGGAAAAT
ATTGTAGATACCAGCAATATGATCGTAAAACGCGGCGAGGGTCGAGATCG
GGATATGCAGAAAGCCTGACCATCTTCAGCATTGACTTATAATTATATAC
GACAGTTCATTTCGATGGGTTATTCCAACAGAATCGTAGAGACTGCGTAC
GAAATATGTGGGGAATGGTCCTGTGATACTGTTCCTTGTATCAAGCTCTG
TTTCCTTCCTGAATGCTGTGACGATTGGTATAAAAAGCCTAGTTATAAAG
GGCTGTCCAAAGAACTTGTAAATGAAGTAACAAAAGTGGATTGCCATTTG
GTAGGGAAAGACGTGGAAGGTTATCAGAATACTTTCCGTGTCTCTTTCTC
GGCTGCTGAAAGATATCTTTTTGCAACAATGCCACACAATTCCAGACTGG
TTTATCTGGCAGCAAAATCGATCTTTTATGTCCATATTAAAGATACGAAA
TGGTGcgaaaatattgaatttaagACCTTGCCCTCTTACTGCATCAAGAC
GGTTATGTTATATTATTACGCAGAAAAGGAACCTTCATTCTGGGAGACAA
TCGCAAC Run BLAST on NCBI protein sequence of TCONS_00028821-protein >TCONS_00028821-protein ID=TCONS_00028821-protein|Name=TCONS_00028821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
LDQALQNYIKEFLYVQQKYAHLNISPSSEAEKFWDTVSRESIFMSGSAVE
VGSICRTLRSNRIEIEFDSMIERGVLQKEYERDFLIPIEGHSGFFHCRRD
MKENRRYVADVVYKIYTDAGKYIKMPSHAANFKEQNRCFLYAALVNRGKY
CRYQQYDRKTRRGSRSGYAESLTIFSIDL Run BLAST on NCBI transcript from alignment at sc0000705:66765..67771 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028821 ID=TCONS_00028821|Name=TCONS_00028821|organism=Clytia hemisphaerica|type=transcript|length=1007bp|location=Sequence derived from alignment at sc0000705:66765..67771 (Clytia hemisphaerica)
GTTGCGATTGTCTCCCAGAATGAAGGTTCCTTTTCTGCGTAATAATATAA
CATAACCGTCTTGATGCAGTAAGAGGGCAAGGTcttaaattcaatatttt
cgCACCATTTCGTATCTTTAATATGGACATAAAAGATCGATTTTGCTGCC
AGATAAACCAGTCTGGAATTGTGTGGCATTGTTGCAAAAAGATATCTTTC
AGCAGCCGAGAAAGAGACACGGAAAGTATTCTGATAACCTTCCACGTCTT
TCCCTACCAAATGGCAATCCACTTTTGTTACTTCATTTACAAGTTCTTTG
GACAGCCCTTTATAACTAGGCTTTTTATACCAATCGTCACAGCATTCAGG
AAGGAAACAGAGCTTGATACAAGGAACAGTATCACAGGACCATTCCCCAC
ATATTTCGTACGCAGTCTCTACGATTCTGTTGGAATAACCCATCGAAATG
AACTGTCGTATATAATTATAAGTCAATGCTGAAGATGGTCAGGCTTTCTG
CATATCCCGATCTCGACCCTCGCCGCGTTTTACGATCATATTGCTGGTAT
CTACAATATTTTCCTCGATTAACCAGGGCTGCATAAAGAAAGCATCTATT
CTGTTCTTTAAAATTAGCTGCATGGCTTGGCATCTTTATATACTTTCCGG
CATCCGTATATATTTTGTATACAACATCAGCAACGTATCTTCTATTTTCT
TTCATATCTCTACGACAATGAAAAAATCCCGAGTGTCCCTCAATTGGGAT
GAGAAAATCCCTTTCGTATTCCTTTTGAAGTACCCCTCGCTCGATCATtg
aatcaaattcaatttctatCCGGTTACTTCGTAATGTTCGACAAATACTG
CCAACTTCTACAGCACTACCGCTCATAAAAATACTCTCTCTTGATACAGT
ATCCCAGAACTTTTCTGCTTCCGATGATGGACTTATATTTAAGTGAGCAT
ATTTCTGTTGAACATATAGAAACTCTTTGATATAGTTTTGCAACGCCTGG
TCAAGAG Coding sequence (CDS) from alignment at sc0000705:66765..67771 >TCONS_00028821 ID=TCONS_00028821|Name=TCONS_00028821|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0000705:66765..67771 (Clytia hemisphaerica)
TTATAAGTCAATGCTGAAGATGGTCAGGCTTTCTGCATATCCCGATCTCG
ACCCTCGCCGCGTTTTACGATCATATTGCTGGTATCTACAATATTTTCCT
CGATTAACCAGGGCTGCATAAAGAAAGCATCTATTCTGTTCTTTAAAATT
AGCTGCATGGCTTGGCATCTTTATATACTTTCCGGCATCCGTATATATTT
TGTATACAACATCAGCAACGTATCTTCTATTTTCTTTCATATCTCTACGA
CAATGAAAAAATCCCGAGTGTCCCTCAATTGGGATGAGAAAATCCCTTTC
GTATTCCTTTTGAAGTACCCCTCGCTCGATCATtgaatcaaattcaattt
ctatCCGGTTACTTCGTAATGTTCGACAAATACTGCCAACTTCTACAGCA
CTACCGCTCATAAAAATACTCTCTCTTGATACAGTATCCCAGAACTTTTC
TGCTTCCGATGATGGACTTATATTTAAGTGAGCATATTTCTGTTGAACAT
ATAGAAACTCTTTGATATAGTTTTGCAACGCCTGGTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028821-exon-sc0000705-1491911889:66765..67771 | TCONS_00028821-exon-sc0000705-1491911889:66765..67771 | Clytia hemisphaerica | exon |
| TCONS_00028821-exon-sc0000705-1510915933:66765..67771 | TCONS_00028821-exon-sc0000705-1510915933:66765..67771 | Clytia hemisphaerica | exon |
| TCONS_00028821-exon-sc0000705-1575043694:66765..67771 | TCONS_00028821-exon-sc0000705-1575043694:66765..67771 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000705 | supercontig | sc0000705:66765..67771 . |
Blast
The following BLAST results are available for this feature:
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