TCONS_00028820 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028820
Unique NameTCONS_00028820
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028820 ID=TCONS_00028820|Name=TCONS_00028820|organism=Clytia hemisphaerica|type=transcript|length=316bp
aaacttttttgtacCCAATGTCAATATATTCGAAGGGCTAGAAATTCTAG
ACTCATACTACACCAATATGTTGGACTTGGTGTATGCCATTATGTGTCAT
CCGAGGAGTTTTTACCCCCAGCACATCGGTGGTATCGAACAACTGGTGAA
ACTTCATGAGATTCTTGCGGAAGTCAGAATTGGGCGGTTGAAGCTTCTCT
TAAAATATGGTGATGATGCTGAGCATCCAGGATTTCTGAGGGAACATAGG
GAGATGGTGAATGTGGCTGATATGAAACTTTATGATACCCAATATGAAGA
CTTAGCAAAGCTTGTT
Run BLAST on NCBI

protein sequence of TCONS_00028820-protein

>TCONS_00028820-protein ID=TCONS_00028820-protein|Name=TCONS_00028820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
NFFVPNVNIFEGLEILDSYYTNMLDLVYAIMCHPRSFYPQHIGGIEQLVK
LHEILAEVRIGRLKLLLKYGDDAEHPGFLREHREMVNVADMKLYDTQYED
LAKLV
Run BLAST on NCBI

transcript from alignment at sc0000705:66374..66689

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028820 ID=TCONS_00028820|Name=TCONS_00028820|organism=Clytia hemisphaerica|type=transcript|length=316bp|location=Sequence derived from alignment at sc0000705:66374..66689 (Clytia hemisphaerica)
AACAAGCTTTGCTAAGTCTTCATATTGGGTATCATAAAGTTTCATATCAG
CCACATTCACCATCTCCCTATGTTCCCTCAGAAATCCTGGATGCTCAGCA
TCATCACCATATTTTAAGAGAAGCTTCAACCGCCCAATTCTGACTTCCGC
AAGAATCTCATGAAGTTTCACCAGTTGTTCGATACCACCGATGTGCTGGG
GGTAAAAACTCCTCGGATGACACATAATGGCATACACCAAGTCCAACATA
TTGGTGTAGTATGAGTCTAGAATTTCTAGCCCTTCGAATATATTGACATT
GGgtacaaaaaagttt

Coding sequence (CDS) from alignment at sc0000705:66374..66689

>TCONS_00028820 ID=TCONS_00028820|Name=TCONS_00028820|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000705:66374..66689 (Clytia hemisphaerica)
AACAAGCTTTGCTAAGTCTTCATATTGGGTATCATAAAGTTTCATATCAG
CCACATTCACCATCTCCCTATGTTCCCTCAGAAATCCTGGATGCTCAGCA
TCATCACCATATTTTAAGAGAAGCTTCAACCGCCCAATTCTGACTTCCGC
AAGAATCTCATGAAGTTTCACCAGTTGTTCGATACCACCGATGTGCTGGG
GGTAAAAACTCCTCGGATGACACATAATGGCATACACCAAGTCCAACATA
TTGGTGTAGTATGAGTCTAGAATTTCTAGCCCTTCGAATATATTGACATT
GGgtacaaaaaagtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016347XLOC_016347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028820-exon-sc0000705-1491911889:66374..66689TCONS_00028820-exon-sc0000705-1491911889:66374..66689Clytia hemisphaericaexon
TCONS_00028820-exon-sc0000705-1510915933:66374..66689TCONS_00028820-exon-sc0000705-1510915933:66374..66689Clytia hemisphaericaexon
TCONS_00028820-exon-sc0000705-1575043694:66374..66689TCONS_00028820-exon-sc0000705-1575043694:66374..66689Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028820-proteinTCONS_00028820-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000705supercontigsc0000705:66374..66689 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.3315	0.323264	1.12602	0.367213	2.68228	2.11957	2.13098	2.79299	0.838045	0.346018	1.00756	0.441554	0	1.1448	0.188236	0	1.74199	0.510138	0	0	1.28205	1.40701	0.760182	1.03667	4.271	2.85882	1.36366	2.42555	1.10382	1.49949
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028820 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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