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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028800 ID=TCONS_00028800|Name=TCONS_00028800|organism=Clytia hemisphaerica|type=transcript|length=4324bpRun BLAST on NCBI transcript from alignment at sc0000704:51828..69746- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028800 ID=TCONS_00028800|Name=TCONS_00028800|organism=Clytia hemisphaerica|type=transcript|length=17919bp|location=Sequence derived from alignment at sc0000704:51828..69746- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00028800 vs. Swiss-Prot (Human)
Match: IKKB (Inhibitor of nuclear factor kappa-B kinase subunit beta OS=Homo sapiens GN=IKBKB PE=1 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 4.478e-58 Identity = 112/221 (50.68%), Postives = 150/221 (67.87%), Query Frame = 3
Query: 18 LVNEKCGAWKCEREMGSGGFGSVTAWINQTNGDKMVIKQCKSAXXXXXXXXXXXXIHLMNTIKHKNVVSGRKVPEEIDKFIRGPEKLLGLEFCES-DLRKLLGRRIHCCGLREQSVLDVLRDVSCGLQFLHKQPIIHRDLKPENILLSQQTNKTVFKITDLGYAKVMDANSIAMSFVGTIQYLAPELYDRNSGYKYTADFWSLGTLIFECITGHRPFVVPN 677
L + CGAW+ + +G+GGFG+V W NQ G+++ IKQC+ L+ RNRERW EI +M + H NVV+ R VPE + LL +E+C+ DLRK L + +CCGLRE ++L +L D++ L++LH+ IIHRDLKPENI+L Q + + KI DLGYAK +D S+ SFVGT+QYLAPEL ++ Y T D+WS GTL FECITG RPF +PN
Sbjct: 7 LTTQTCGAWEMKERLGTGGFGNVIRWHNQETGEQIAIKQCRQELSPRNRERWCLEIQIMRRLTHPNVVAARDVPEGMQNLAPNDLPLLAMEYCQGGDLRKYLNQFENCCGLREGAILTLLSDIASALRYLHENRIIHRDLKPENIVLQQGEQRLIHKIIDLGYAKELDQGSLCTSFVGTLQYLAPELLEQQK-YTVTVDYWSFGTLAFECITGFRPF-LPN 225 HSP 2 Score: 115.161 bits (287), Expect = 7.890e-26 Identity = 117/482 (24.27%), Postives = 208/482 (43.15%), Query Frame = 2
Query: 695 FECITGHRPFVVPNKAYDWPKYMRQKSDDHIWGAYDEHTQSMNYYRDIPTPNQLSKPLVDAFCEWLKLVLRFDAKHRGNQQIQTHDGNQMLECFYEIQQILHKRIINVFEVLKCQKHSYVLRPGDTGSTLKMFLLNELSVEMEDQLIVFPNHFKLLDD--------NASLAEQCSDIVQEVFLFDTSAEAKFEISSA---MLDKVRELLGNPEEKRKGSELRSYWAQSLFYCLSKANDYAMLLKSQKALLNNIQKRWEHLQHQKELLQRTAIKLEATVDMFKLSYECDRTNRPE--TYGKAGHDCLHEWGILYNKIENITSHTQLDVLYAVVEQKKEKIKAGLQSTSQSNR--NPLEDIASQVGDKYDRLREKIRDIKMKDFLHDSTAISNMLWNCVAKRDTLYTEFYRGLRKALVLDKEISQAVTEVQNRIHAINNDIAKVQSYQKARQCILWKLLASNAAMSSLDGSIPFSSLPDLLEES 2095
FECITG RPF+ + W +RQKS+ I + D + ++ + +P PN L+ L + +WL+L+L + + RG +G CF + IL+ +++++ ++ H+Y + ++ +LK + + + EDQ ++ L+ D + L E + + VFLFD S + +E + + V +L P+ +LR W Q + D L + Q+A + N+ + L K + + +L+A +D FK S + D E +G L W + +E ++ +L + + I LQ + + L+D+ Q + Y RLREK RD + + DS + +L + + Y L K +V ++ + + +V+ + +N D V Q+ RQ LW LL A S + G P S PD + S
Sbjct: 213 FECITGFRPFLPNWQPVQWHSKVRQKSEVDIVVSEDLNG-TVKFSSSLPYPNNLNSVLAERLEKWLQLMLMWHPRQRGTDPTYGPNG-----CFKALDDILNLKLVHILNMVTGTIHTYPVTEDESLQSLKARIQQDTGIPEEDQELLQEAGLALIPDKPATQCISDGKLNEGHTLDMDLVFLFDNS-KITYETQISPRPQPESVSCILQEPKRNLAFFQLRKVWGQVWHSIQTLKEDCNRLQQGQRAAMMNLLRNNSCLSKMKNSMASMSQQLKAKLDFFKTSIQIDLEKYSEQTEFGITSDKLLLAWREMEQAVELCGRENEVKLLVERMMALQTDI-VDLQRSPMGRKQGGTLDDLEEQARELYRRLREKPRDQRTEG---DSQEMVRLLLQAIQSFEKKVRVIYTQLSKTVVCKQKALELLPKVEEVVSLMNEDEKTVVRLQEKRQKELWNLL--KIACSKVRG--PVSGSPDSMNAS 679 The following BLAST results are available for this feature:
BLAST of TCONS_00028800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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