TCONS_00028767 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028767
Unique NameTCONS_00028767
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length946

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028767 ID=TCONS_00028767|Name=TCONS_00028767|organism=Clytia hemisphaerica|type=transcript|length=946bp
TGGGGTTCACTTATCATCTACACTATAGAAATATTCCCTACAATGTTAAG
GTCATCAGCCTACGGTTTCGTTTCGATTTGCGGCCGAATCGGTGGTATCG
TGGCTCCGCAATCCGCTCCACTTTATGACGTAGCAAAACATCTGCCTTAC
ACCATCAATGGCGTTTTGGGCGGTCTTTGCGCCCTAGGTGTCCTGCTTCT
CCATGATACGGCTACACAAGATCTGCAAGATAAAAtggatgaagatgaag
aaggggATCTCAAGAAAGAAGATACGACagtgtaaaaaaaatttgtcgaA
AATATACCCAGTTGGACATCTTACCTTTGAAAAGGAGACTCTAAAATCCA
TCGTAAAACAGACAAAGTTTTTCTCATGAGGCCCCCCCAAGCGGATTtcg
tgatgacgtgatagggGCTTTtttagcgtgattacgtgatttgggaATTG
TTTTTTCGTGATTTCGTGATGAGGTGGAAACgtgatttgaaagttttttt
gagccgtgatgcgtgatttggagGGATGGTTGATTgtccatttttttgct
gattttcgtaatcgtgattgaagacaaaaaattgcgtgatatcgtgatta
GAGTTACCGCTAGGGGTGCCTCATGTATCAATCTCGTGTTTCAGTGCCCG
AGTAATTTCCACTTCCATGATAGAAATTATGCTTTTTGATCATGCCAAAA
AATTTACTTTAGCTTTATACTGGGGAAATTTctagaaatatttatttttt
tatcatttcgtCCTCCAAAAACGTAAATGTTTGAGGAATTTTAtaatcta
attttttacaagattttatGTCGTCTAAACTCGTGTATCAtgtatatttt
ttaaagatacgattttttacagaaagattttgaagatttttataGAAATA
AAATACAGTCGAACACGAACGGGGGAGCAAatatgttcgagttaag
Run BLAST on NCBI

transcript from alignment at sc0000703:182162..186285+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028767 ID=TCONS_00028767|Name=TCONS_00028767|organism=Clytia hemisphaerica|type=transcript|length=4124bp|location=Sequence derived from alignment at sc0000703:182162..186285+ (Clytia hemisphaerica)
TGGGGTTCACTTATCATCTACACTATAGAAATATTCCCTACAATGTTAAG
GTTAGTATAACGAGGGTATTGGTATCTAGGCTATTTCTATCAGGAGCCTG
GGGTTCACTTATCATCTACACTATAGAAATATTCCCTACAATGTTGAGGT
TAGTATAACGAGGGTATTGGTATCTAGGCTATTTCTATCAGGAGCCTGGG
GTTCACTTATCATCTACACTGTAGAAATATTCCCTACAATGTTGAGGTTA
GTATAAAGAGAGTATTGGTATCTAGGCTATTTCTATCAGGAGCTTGGGGT
TCACTTATCATCTACACTGTAGAAATATTCCCTACAATGTTGAGGTTAGT
ATAACGAGGGTATTGGTATCTAGGCTATTTCTATCAGGAGCCTGGGGTTC
ACTTATCATCTACACTGTAGAAATATTCCCTACAATGTTGAGGTTAgtat
aaagatttttttagtatttaGGCTATCTTTCATACGTTAACAAATACCCG
TCGGCTGAATTTAAAGCCTCGGAGGACCTAAAGACATAAAacttttgggt
gggaaattaaGCCACTTATTTCAGATCACGAAATATTTAGGTCAATGAAT
TTGGTGACTCAGCTGAAATTATTCATCCTAAAACCCAAATATTTCATGAT
ATACTATAATAAGTTAGTACGTTTCAAGACCCATGGCTTTGGTATTTAGG
TTATTTCCATATATACGTTCACGTATACCAGTCGGCTgaatcattgagtt
taaagcctcgATATAAATTTTGGGTGGGACATTAAGCCACTATTTCTCAT
CCATAACTCACGAACCGCGTGGTTTTAACACAGAAGCCACGCCGTATTGG
TAGGGGAAACTATCGCCagatttagaaaaatgttcCGTGTAAAaacgcta
gattcaatctgtcattccAAAAACAGCGCAAATGTTCACTTTTTCTTCGT
CTGAGAAAGTTTGAAGATTCCACTCTGGCCCATTCGACCAATAatcctta
aaaataaaaaaatatggcCAGCTCAACACTGAGCCTTCTCGAAATTTTGC
TCTCAACTTACTGGTAAATTCAGTCTCCAGGCAGCTCCCTGGACGGTAAC
CCAAGGAATGAGAAGAGCCCTAAAATTTAGACAAAGCGAAGTTAAAGTGA
TGCgaaaaataccttatcggggaaaacttcgtcggggaaaagtgacgaat
attttttcccaacgaaaattttccccgacgcagcccgacgaagttttccc
cgataaggtagtctaacagtaaaatattttacttttaattgTTCAGGTCA
TCAGCCTACGGTTTCGTTTCGATTTGCGGCCGAATCGGTGGTATCGTGGC
TCCGCAATCCGCTCCACTTTATGACGTAGCAAAACATCTGCCTTACACCA
TCAATGGCGTTTTGGGCGGTCTTTGCGCCCTAGGTGTCCTGCTTCTCCAT
GATACGGCTACACAAGATCTGCAAGATAAAAtggatgaagatgaagaagg
gtaagttttcattgaaaagtctGTTATTTATGTTTGGGAAATTGAGGCAA
TTATATTAAGTTGTCTATAGAAAAGTCTGTTTGATGTGCTTGAAAAACCG
AGGCGAAATGCGTAGTTTCGACACACCTAGTTTCGTAGTTACTTTAACTG
AGGAATCAAAGaagaaagttttatataatCTGATTGAGGCagctacactt
tttttataaaaacgtaCAAAACTTTCGaggccttcgaatgttcttaacta
taactttctgagtttttaaaactaaaaatggTTCTTAATATGCTTTTCAT
GGTTTCTGCCTACTTTTTCAGTCCcccttaaaatgcaattttgcccTTAA
AGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCAAATATTTTAGTCCccccttttttcttattttgatagatt
cttgcagcccttgataaagaatccccccttatttaaaaaaaatgacaaaa
atcccCCCTATtttaaaaggcaatttttttgacccccccttattttaagg
ggggggggggcagaaacCATGACTTTTGTGAATATTATTACAACTGCCTT
AGAAATTCGGTGTTTTGGTGGatagtccgcaaagccttaaaacgttctta
aaCTTGTGCTTAATACTTAAGCCAtccaagccttatgttcttatatagtt
tgttcttataaaaatattttttttttttgcagggATCTCAAGAAAGAAGA
TACGACagtgtaaaaaaaatttgtcgaAAATATACCCAGTTGGACATCTT
ACCTTTGAAAAGGAGACTCTAAAATCCATCGTAAAACAGACAAAGTTTTT
CTCATGAGGCCCCCCCAAGCGGATTtcgtgatgacgtgatagggGCTTTt
ttagcgtgattacgtgatttgggaATTGTTTTTTCGTGATTTCGTGATGA
GGTGGAAACgtgatttgaaagtttttttgagccgtgatgcgtgatttgga
gGGATGGTTGATTgtccatttttttgctgattttcgtaatcgtgattgaa
gacaaaaaattgcgtgatatcgtgattaGAGTTACCGCTAGGGGTGCCTC
ATGTATCAATCTCGTGTTTCAGTGCCCGAGTAATTTCCACTTCCATGATA
GAAATTATGCTTTTTGATCATGCCAAAAAATTTACTTTAGCTTTATACTG
GGGAAATTTctagaaatatttatttttttatcatttcgtCCTCCAAAAAC
GTAAATGTTTGAGGAATTTTAtaatctaattttttacaagattttatGTC
GTCTAAACTCGTGTATCAtgtatattttttaaagatacgattttttacag
aaagattttgaagatttttataGAAATAAAATACAGTCGAACACGAACGG
GGGAGCAAatatgttcgagttaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016312XLOC_016312Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028767-exon-sc0000703-1491911889:182162..182211TCONS_00028767-exon-sc0000703-1491911889:182162..182211Clytia hemisphaericaexon
TCONS_00028767-exon-sc0000703-1510915933:182162..182211TCONS_00028767-exon-sc0000703-1510915933:182162..182211Clytia hemisphaericaexon
TCONS_00028767-exon-sc0000703-1575043694:182162..182211TCONS_00028767-exon-sc0000703-1575043694:182162..182211Clytia hemisphaericaexon
TCONS_00028767-exon-sc0000703-1491911889:183458..183661TCONS_00028767-exon-sc0000703-1491911889:183458..183661Clytia hemisphaericaexon
TCONS_00028767-exon-sc0000703-1510915933:183458..183661TCONS_00028767-exon-sc0000703-1510915933:183458..183661Clytia hemisphaericaexon
TCONS_00028767-exon-sc0000703-1575043694:183458..183661TCONS_00028767-exon-sc0000703-1575043694:183458..183661Clytia hemisphaericaexon
TCONS_00028767-exon-sc0000703-1491911889:185594..186285TCONS_00028767-exon-sc0000703-1491911889:185594..186285Clytia hemisphaericaexon
TCONS_00028767-exon-sc0000703-1510915933:185594..186285TCONS_00028767-exon-sc0000703-1510915933:185594..186285Clytia hemisphaericaexon
TCONS_00028767-exon-sc0000703-1575043694:185594..186285TCONS_00028767-exon-sc0000703-1575043694:185594..186285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000703supercontigsc0000703:182162..186285 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.0741855	0	0	0	0	0	0	0	0	0	0	0	0	0	0.162163	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028767 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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