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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028752 ID=TCONS_00028752|Name=TCONS_00028752|organism=Clytia hemisphaerica|type=transcript|length=1232bp
tttcagtgacattttaaaaaagaaaagaaaaaattcaaaattacagAATT
ATGAAAGAATTAATATTTCAAGTCCCCATATCTGAAAAGGCCGTCAACGT
TCGAACGCTTTCATTAGACAACGCTGTCATGATTTGGGTAGGTGAGACTA
ACGAATTCGATAAATTAAACATTGCCTCGATAAGTCAAGACAtgaagatg
acgtcatcggttgatttgattggtcaaaGTTCATTGACAATGAGTCAAAA
ATTGTGCAAAAGATTGAAAAAGCAAGTGCTTCTAAGCTATAATGTGGCGG
AGGAGAATCTGTCGGAAGCTAGTCTAACTGAAGACTTGATTATGAAAGGT
ATTATCAATCGATTGGCTGCGGATCAAGGCTAGATGGTGGAATCAAAATG
TTTGGAGTAGAGTCTAGCGgtgaaaaaattcttccaaTATGCTGCTGTTG
TTGAAATGAAGTCCATATTAGGACCAAGATATATTTTACATGAAACAAGC
TCTCAAGCTCTCCAAAGAAACTCTTGAAAGACGTGAAGTCCCTATCGCCT
GTCTTATTGTTTACAAGAATAACGTCATTGCTCGTGGCTCTAACGACGTC
AACCGTACGAAAAACGCTACACGGCACGCTGAGCTTTTGGCGATCGAAGA
GGTACGTGAATATGCAAAAACGGAATCACTAGACGTGACGCAAGTTTTTA
AAGACTCTACTTTATACGTGACAACGGAGCCTTGTGTTATGTGCGCGGCC
GCTTTAAGGCTAGTCGGTTTAACAAACGTTGTATACGGATGTGGGAATCA
ACGTTTTGGAGGTTGCGGATCAAGGCTAGATGCTCATTCGAGGATGCCTA
GGAACAATACTACAGAAGAAGTACCACCTGTTGCGAAACGATTAAAAATG
GACGCTCTATCTGGTAGTTGCTTGATTGCTATGGGTGATCCTTTAGTTTG
TCGGACAGGCATAATGGCGGATGAAGCTGTGAATATGTTGAAATTATTTT
ACGCCGGTGAGAATCCAAACGCGCCGAACCCGAAAGATAAGAGTGGGCGA
ATGGAAGCATTAAGGAAAGAAAAAGAGAGTTGAGGATGTAAGCTACGTGA
GTGAAAAGGTCATGGGCTGAAGACTGGTagatcattgagtttcaagccga
aggctagaggtcaatctccttggtaggatttgaagccaacaaatcctacc
aaagttgcgcggccttgagcgacccgcctggt Run BLAST on NCBI transcript from alignment at sc0000703:136302..138532+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028752 ID=TCONS_00028752|Name=TCONS_00028752|organism=Clytia hemisphaerica|type=transcript|length=2231bp|location=Sequence derived from alignment at sc0000703:136302..138532+ (Clytia hemisphaerica)
tttcagtgacattttaaaaaagaaaagaaaaaattcaaaattacagAATT
ATGAAAGAATTAATATTTCAAGTCCCCATATCTGAAAAGGCCGTCAACGT
TCGAACGCTTTCATTAGACAACGCTGTCATGATTTGGGTAGGTGAGACTA
ACGAATTCGATAAATTAAACATTGCCTCGATAAGTCAAGACAtgaagatg
acgtcatcggttgatttgattggtcaaaGTTCATTGACAATGAGTCAAAA
ATTGTGCAAAAGATTGAAAAAGCAAGTGCTTCTAAGCTATAATGTGGCGG
AGGAGAATCTGTCGGAAGCTAGTCTAACTGAAGACTTGATTATGAAAGGT
ATTATCAATCGATTGGCTGCGGATCAAGGCTAGATGGTGGAATCAAAATG
TTTGGAGTAGAGTCTAGCGgtgaaaaaattcttccaaTATGCTGCTGTTG
TTGAAATGAAGTCCATATTGTATGAGAATACCCCTTTCTACATTATCCCT
TGTAAATATTATCTCACTTTAGTTTTGGTGAGCTCGGGAAGAGTAACAAC
ACGTGTATAAATGGCGCAATTCAAGCTtaaatatttcagaattttcGTTT
TTAGTATTCTTAAGATATGTGCAAATTTTCTGAAGTGAAAATTCTCTAAA
ATTCTGAAAAGGGTTTCGTCATTCATTATGCAGCCACTTTAGTTTTAAAC
TTTTCTTGCTAAGGTGATACTTGTTGCGACTAGCTCATCAATATTAGTTT
GGTCACCGGTCGGTCAATTGTGGCTGTTTCAAGTTCCCGgggggtatgtc
cgagccaaagttcgaaGATTTGACTGAATTAGACGTTTTGCGACCCTTTG
GAAACCATTTTTCCAATTGTTATTGTTAATTTAtcgtttttgtacccctt
tgaaaGACTTTCCAGGATTTACCCTTTATAGCTTTCACATACCCGACAAC
CATCTTGCccaagtaccccctccccccccaaGACTAATGCATTCCTTACT
TCTGTTAGCAGTCATTTCTGACCGTCCCTTTTAATCCATATTTCACTCAT
TATTAGCTGCCTTTAATTCATATTTCGTGTACGTTATTGGATTTAATTTT
CGTGGatattaattttagcgtttttcgcgtgTTTTTTTGGCCAaaccgcg
aaatacaattttttccaattttatcaataagtttgaaaaatccctaggaa
gatgaaagaaatttgtctaaaaagggcaaaaaccgtgaaaattaaaaccc
gcgaaatgcaatttttccgatttttttttcgaccggGAATATTAgtttcc
gcaaaaattagttccaataagatAGGTTTTATAATTCATAGAAGTGTATC
TCTCAGGTCTATCTTACATCGTTTTATATTCTGTTGTAGATTTTTTGAAT
AAAGATAAGGCGAAATAACAATATGAAAACTAACGAGAAAGGAACGTTAC
CAGTAAATTCCCTTATAGAGGACCAAGATATATTTTACATGAAACAAGCT
CTCAAGCTCTCCAAAGAAACTCTTGAAAGACGTGAAGTCCCTATCGCCTG
TCTTATTGTTTACAAGAATAACGTCATTGCTCGTGGCTCTAACGACGTCA
ACCGTACGAAAAACGCTACACGGCACGCTGAGCTTTTGGCGATCGAAGAG
GTACGTGAATATGCAAAAACGGAATCACTAGACGTGACGCAAGTTTTTAA
AGACTCTACTTTATACGTGACAACGGAGCCTTGTGTTATGTGCGCGGCCG
CTTTAAGGCTAGTCGGTTTAACAAACGTTGTATACGGATGTGGGAATCAA
CGTTTTGGAGGTTGCGGATCAAGGCTAGATGCTCATTCGAGGATGCCTAG
GAACAATACTACAGAAGAAGTACCACCTGTTGCGAAACGATTAAAAATGG
ACGCTCTATCTGGTAGTTGCTTGATTGCTATGGGTGATCCTTTAGTTTGT
CGGACAGGCATAATGGCGGATGAAGCTGTGAATATGTTGAAATTATTTTA
CGCCGGTGAGAATCCAAACGCGCCGAACCCGAAAGATAAGAGTGGGCGAA
TGGAAGCATTAAGGAAAGAAAAAGAGAGTTGAGGATGTAAGCTACGTGAG
TGAAAAGGTCATGGGCTGAAGACTGGTagatcattgagtttcaagccgaa
ggctagaggtcaatctccttggtaggatttgaagccaacaaatcctacca
aagttgcgcggccttgagcgacccgcctggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028752-exon-sc0000703-1491911889:136302..136770 | TCONS_00028752-exon-sc0000703-1491911889:136302..136770 | Clytia hemisphaerica | exon |
| TCONS_00028752-exon-sc0000703-1510915933:136302..136770 | TCONS_00028752-exon-sc0000703-1510915933:136302..136770 | Clytia hemisphaerica | exon |
| TCONS_00028752-exon-sc0000703-1575043694:136302..136770 | TCONS_00028752-exon-sc0000703-1575043694:136302..136770 | Clytia hemisphaerica | exon |
| TCONS_00028752-exon-sc0000703-1491911889:137770..138532 | TCONS_00028752-exon-sc0000703-1491911889:137770..138532 | Clytia hemisphaerica | exon |
| TCONS_00028752-exon-sc0000703-1510915933:137770..138532 | TCONS_00028752-exon-sc0000703-1510915933:137770..138532 | Clytia hemisphaerica | exon |
| TCONS_00028752-exon-sc0000703-1575043694:137770..138532 | TCONS_00028752-exon-sc0000703-1575043694:137770..138532 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000703 | supercontig | sc0000703:136302..138532 + |
Blast
BLAST of TCONS_00028752 vs. Swiss-Prot (Human)
Match: ADAT2 (tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 4.214e-50 Identity = 86/184 (46.74%), Postives = 117/184 (63.59%), Query Frame = 1
Query: 487 YMKQALKLSKETLERREVPIACLIVYKNNVIARGSNDVNRTKNATRHAELLAIEEVREYAKTESLDVTQVFKDSTLYVTTEPCVMCAAALRLVGLTNVVYGCGNQRFGGCGSRLD-AHSRMPRNNTTEEVPPVAKRLKMDALSGSCLIAMGDPLVCRTGIMADEAVNMLKLFYAGENPNAPNPK 1035
+M++A+ ++KE LE EVP+ CL+VY N V+ +G N+VN+TKNATRHAE++AI++V ++ + ++VF+ + LYVT EPC+MCAAALRL+ + VVYGC N+RFGGCGS L+ A + +P NT G P C G A+EAV MLK FY ENPNAP K
Sbjct: 25 WMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLP--NT------------------------GRPFQCIPGYRAEEAVEMLKTFYKQENPNAPKSK 182
The following BLAST results are available for this feature:
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