TCONS_00028699 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028699
Unique NameTCONS_00028699
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1071

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028699 ID=TCONS_00028699|Name=TCONS_00028699|organism=Clytia hemisphaerica|type=transcript|length=1071bp
AAAATATCACACCATCTTTTAGAGGCACGTTGCAATATGTCAAAAAAATC
TATCATTTTTTGATGTGGCTAAATTTAGAGGGTCAGTTGGACAGAAGAAC
TGTATTGTACATAGTTTTTCTGCTTTAAACATGGTCTTGTGTAAGAAAAA
ACACGCTTATAGTGGGGCATCACAAGGAGCACCGCCACGAGAGCAATGGT
CACGAAAGATTGAGTTTCTGTTTGCTTGTGTTGGTTTTGCAGTGGGTTAT
GGAAACTTCTGGAGATTCCCCTTCAAATGCTTCAAAAATGGAGGAGGTGC
TTTCCTGATTCCCTTCTTGATATGTTTGGTATTGGCCGGTATTCCACTAT
TTATGTTGGAACTGGGGCTCGGTCAACTGACACAGGCTGGTCCACTGAAA
GCATGGAGAAAGATATGCCCTTTGATGACAGGTATAGGTTACGGGATGGT
GGTCGTATGTTTTTTGGTGTCCATTTATTACAATGTTATCTTAGCGTGGA
GTTGTTTCTACTTTTTCAATTCGTTCAAATCAACTCTTCCTTGGGATGGT
GGGATGGCTAGTACTGTTGGCAATCTCACCAATTCGACCAATAATTTAAC
TGTTGACGTGACTTCACAAAGCAAATACTTTTTTGAACATGAAGTTTTGA
ACATCAGTGGTGCTGTGGACGATTACGGTGTCATCAATTGGAAAGTGACC
CTATGTCTATTGCTAGCATGGACGCTTGTTTACTTTTGTATCTTCAAAGG
AATTCGAACCACCGGGAAAgTGGTGTATATTACAGCGACCTTACCTTACG
TCATGCTTCTCATTTTCTTCATACACGGCGTTCAATTACCTGGTGCAACA
AAAGGCATAATGTATTACATCACACCTGTGTGGAGTATGTTGGCAAAGCC
TCAGGTTTGGGTAGATGCAGCCTCGCAAGTTTTTTATTCGTTAACTTTGG
GATTTGGTGTAATGCTAACGTTCGCTAGTTACAACAAACAAGATAATAAT
CTTGTCAGGTAAGATGATCACTTTTTCTTCTAAGGATAAGAACACAGATT
TGGGGGTGGCACACATGTTAC
Run BLAST on NCBI

transcript from alignment at sc0000698:62515..72958+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028699 ID=TCONS_00028699|Name=TCONS_00028699|organism=Clytia hemisphaerica|type=transcript|length=10444bp|location=Sequence derived from alignment at sc0000698:62515..72958+ (Clytia hemisphaerica)
AAAATATCACACCATCTTTTAGAGGCACGTTGCAATATGTCAAAAAAATC
TATCATTTTTTGATGTGGCTAAATTTAGAGGGTCAGTTGGACAGAAGAAC
TGTATTGTACATAGTTTTTCTGCTTTAAACATGGTCTTGTGTAAGAAAAA
ACACGCTTATAGTGGGtaagtttctaaaaaaaatatctCAATTATGTGTG
AAAGGTTacctagctggcacacaacgttgtttcaacgctcatctaacgtt
atatggatgttgtgagcgttagataaacgttgaaacaacgttgtgtgaaA
GATTAAGAACGTCAATTCTTTAATTTGTAATGCCATATGGTTGTTAAAAA
TAACATccttaaaattgtaaaatgaaatTTCCACTGATTGAATGCACTTG
TTTTTCTCTTCGCTATTTAGTATTGTACCCTGGAGACGCTGCAGGCAGTT
TCTAAATTCCAGCCATGCAAAATATttgatcggatttttttttaaagtgg
tacCCCCATTGAGAGCGCTAGATCTGATTTTTCTTGCACACTAACGATGT
AGCACCGTTTGTTGTTAAGTTTGGAGACTGTAATTGCctctttgcgggta
ccactttaAAAAAAGCCCCAATCTCAAAGATGGCGCATATAGCTTAGTTT
AGGGGTTAGCTAATTACACTTATACAACTACTCAAGTTATTAAAGCGAAT
CGGTTATACTCGCTTTAATTGCAACCATTTAAACAAGATTTGAGCTGTGG
TGATTTTCGAAAACCCTGCCTTTCGCgttaatatttcattttcattttca
tttttcccgcGTTAAATACTTGGTTAGTTATCCAAGTGTAATAAGGGATA
TAGGCCAGTAGTAACCACTACAAATTATTCACGATTACTGTTCGTAGtac
ggatcgagagtgttcatattagtttcggaacgtttcggagtaGTTCCGat
ccgatgaaaatagtggagcgaaaccgttttgatctgttttgctgtgtaac
gtcttcttttttggcGTTTCGAATTTtaacgttcacacttgtttcggaac
caaAATGAAACGGAACTgcaacgtctgaacatggtctaaaattCATGTAG
ATATCAAGTCTGTTTACAGGTAATGATACAGCTGAGTGTTTGGAAGATCC
AGGCTGCTTATTTATTGCTGTTTGAGTTAATGAATTCTGAACTTTAATCT
TTTGATGATTAAAACTTTTACTAGTATTTGCAACTATCTCAACTATTGTT
TACCAAAAAGCTCTGTGCTCAGTTAATATGTTTACATTATCAGGTCATAT
TTATAACTAAGCCGGGATAAATCAAGACCTTGATTTACCCTTTGGATTAA
TGGAGTTTATTGAGACCGTTTTTACTCACGCGACAAGGGGTTTACTGAAA
AAGTTATTGCAGTTGCACGACTTGCTACTTCATTTGTTTTGGATATTCAC
TTACATGTGACATGGTAGTGTTGGGAGAGGATCGAATTTGACTTATTTAG
TATCTGTTTCTTCAAACCAAGTTGACTATAACAAGAGATAATCAAGGATA
TCTTATACATAAAACACTAGATGAAGTTTTTACGTCCCTACCTAAAGCGa
aataatccgccatctttaataAGTTGACCATAGTGCCATCGGTGCCGGCA
ACCGAGGTCTACTGTGGtttactttcagcaaagatggaggattattttgc
ttcacctgccgttgcttgggaaatacagagtagaTCTTTTTAGTGTTTTA
TCATAAGATATCTGTGGAGATAGATGGCATCAGCAAATCAAGTAGCACCG
AACACTTCAAAAGATCCAGAACAACCAGGAACAAGCACTACCgagtaaca
aaaacataaaatatctataCTCTACAAACTTGAGCGTTGATAGATTTATT
AAGccagaagggctagatgtcgtgcttcggctgaaaagtgtgccgtggct
aggtaggaaatcctacctaggttaCGTgaaattacaatagaatttcggcg
cttgaccaatcagaagcttcgcgggttttcgaaaacaatagcaacaatat
ttttttccgatattaaattttttttgcctgtgatggcttttaaagcacga
catctagcatttcgggctttataaatctctGGTTTCAAATCCTGTTTTAT
TATGACTGGCTTCTTCTTTACTATAGATAGcttttcatgatattcatgac
gtaatgttttctacggaaataccccggttttagcctgtagtggcaaattt
aaactagacaaaagttgtataaaatttgccactactcgcaaaaaccgggg
tctttccgtagaaaacattacgtcatgaatatcatgaattactgCCTACC
GTTAAACCACATTTACTGACCAGCACTGACAGGCTTCTTAAGTTGGAAAT
AAATATGTTATCATCTAGAAGCAACGTAACAGGGTTGCTCCtaatatttt
gaattattaTCGAATATAGATGGATACTTCCTGTCTATCCTCCTTCGAAT
CTGTTGCGCTAAAATGTTTTACAAACTTTGAATTGCAAATACCTgcttaa
ctttcttttttgaagggTCTTTCATGGGAGCCTTTTGgttaaagaatatt
ttctaaCATTTCTAGTTGAACCGTAATTTGATGAACACAATAAGACAAGG
TTTCCaaccattctattggttagaagtgacgtcaaacttgaatttaacca
ataaAATGGCGTGGTCTAAGGATGGACGCCACTCTGCAAACTTGGTGCTA
AAGTAGTACAACCTTTTCACGTGCATACTGGAGACTGGTGTTCCTTATGA
AAAACATAGATAAATGAAGTCGAGAAATACAATTCTTACCTGTATCCTTC
TCTCATTACCAGGGCATCACAAGGAGCACCGCCACGAGAGCAATGGTCAC
GAAAGATTGAGTTTCTGTTTGCTTGTGTTGGTTTTGCAGTGGGTTATGGA
AACTTCTGGAGATTCCCCTTCAAATGCTTCAAAAATGGAGGAGGTGATta
tatttctttcttcttctttttgtgcCTGATTTTTACTTTGTCTTAATTAG
TTGTCAGTCGACAATTCTTTTCAtaataatctatatattaaaTACGCTAA
AACgcgtgtgtttacaacgttttgtaaaaagttttcgaaaatctaacaaa
gctctacaaagcctcctcttcgtGGCGTTAAACTATCATGTTTTTGCACC
TTATGCAGATTTCCTAACAATGAACTAACTTTGAGATGCCAAGATGctat
tttctaaaaagatgcGTGGGAGCTGGACGGGTTAAATCAACCTTCTtctc
aaatataatttttcattctgaagaattcttattcagatgcttTTTCAATC
TTTCTGTTTAATATAgtggctccctatcactttctaaactttttaaagtc
tttcaaagtcacctgCAACTGTAGTGCCCGTCGTGCCACGATGGCTAGCC
TAAATAGATCTAAAATATATTTCTTCTAAGCCATTTACTTAATTGTagtt
aaaaattgcaatgcaatgttattttttttctcctctCTTTTATAATGTCA
AAATCTTATCATCAATCGGCAGCTTACGTTAGAGTTTTTTAGATGTATAG
TGATTTGCTGAATTGGGACACGCAGTGTGCGACGCTGCACATACTGCTAG
TAATATTtaagacaaaagggaaattccccgcCACTAACTTTAATTATTAT
AACCACAAACGAATTGTAAGCTCTCTAACTTTCGTTGGaagagtagagtt
ttaactctgagttttaatgcTAAACTTTAAGACTTGCGACCTTAGGATTT
CATTTCAGGatcgaaaagttcaaaaaaggtCCAATAAGGCTATACATCCC
TcccaaattaaaatatttggttaaATTAATTAGGTTAAATCGACCTTATC
GtccgaactttaaatcttggGTCAAATCACTGACCTTCATAAACCCTGGA
CCATGCTATATCCGCCATATTTGATCGGAGATTTTTTGACAGTGGTACCC
GCAAAAAGGACATTGTTGAAATTTTACCTAGCGACAAACGGCGCCACGTC
TCACTAGTGTGCAAAGCAAAAGtggatctagcgctctcgatgcgggtact
actttcaaaaaaaaactccgataaaaatattttgcttggccgggattgat
gAACTGCTTCCAGGGTCTATATAAATGAAGCTCGGTGGATCTAGCAGATA
AATCAAGCTTTATTGACACAATAAATTTTATTCGCTTTGTTTTTTAAGGT
GCTTTCCTGATTCCCTTCTTGATATGTTTGGTATTGGCCGGTATTCCACT
ATTTATGTTGGAACTGGGGCTCGGTCAACTGACACAGGCTGGTCCACTGA
AAGCATGGAGAAAGATATGCCCTTTGATGACAGGTTTGTTTAGGGCATAT
ATAATAAGTTTTAAACTTCTCAAAAAAGCATACCGTTACTATATAAATTC
GTGGCTTGAATCcctgctccttccaatgttcaaTTCAATtgatagatagc
cgagccggctggccgtggaccccaaAAAAAGACAGTTGGAAAGGTtgcct
aaaagtcctagattaccaCGGCCCCCGGCGTGCAAATCGAATCGAGGagg
ccaaaaaaatatgtcgcccatCATGGTTGggcgaagaagaaaattttaga
ctttttacCCTTATACCCCTCTAAACGgtagattttttaaagtaaaaaaa
aaaatactttgcaaaatattaggGGGGCATGGCCCACCTGGCCCCCCGGT
GAGGGGGCCATGATAACTGGGCTATCCGTACGTAATGgatcgactctatc
tatctaaAATACATATACTGTTACTTGTCCTGGCACTCACTGTTTGAACA
ACTGATTTCATGACCAGTGCTAGTTTCATTGTATACGCTGCGACACGTTC
ACCTCACCTCGTGTTAACTACACTAAAGctgattttaaaggttttgtttt
taaataagagtgatatcgtttgcttactaatcaattttaattcacaagct
ttttatTATTGgtttgacacggatgtggagcaagattggtcagatagagg
aaaagaaaagcaCATTTtattgcttatatcagcataatatataacaatag
gaagacactgtcctgatatgaaatatgtgtctaatatgaaacgggaacac
ttatgtaaaaacaaaacctttaaagcaaTACTTGAGCGAGAGGGTGAAGT
CAGTATGAAGGCGCGTACTTCAAATTGATTGCTTTGAATTTAGTATTTTG
CTGGTTTTGTAGCGGTCTTTATTTACGACGTCATTTGTCGTTCGATTGAG
GCAATGCGATTTTAGCACCAACTGTCTTAAGCAAGCTCGAATCAATACTT
AACGgtattatccgacgcgcgtcAAAATAGcgcattttttgaatatttcc
aaAATTGACGTCACCACGTAACGAATTTGATGACAATTTTTAACGTTGCG
TCACAAAATAGGAATTAacactttgtccaataactgttTATTATTGTCCT
TATAAGCATTTTAATATAGGGATTAGTACTAAGCATTGCATTATATTTCA
TATAATAAGCgtccgtagtgcagtggtagagcatcttgCTACgctgcgca
aggttgtgggttcaacccccagccgggtcataccaaagatttccaaaatg
gtactcgatgcctctctgcttgatgctcagcaattaagagaaggatcaag
ggtaagtggagaaatccagggagaaagaatggcgccctcccctatcttcg
ggtagatagctattgaaagaggagcctttgggtcgcctccgactgcggtc
gcagacttacttactatatTTCATACTCGCTCCTACTTGATATTCTCTTC
GTTATTCTAGGTATAGGTTACGGGATGGTGGTCGTATGTTTTTTGGTGTC
CATTTATTACAATGTTATCTTAGCGTGGAGTTGTTTCTACTTTTTCAATT
CGTTCAAATCAACTCTTCCTTGGGATGGTGGGATGGCTAGTACTGTTGGC
AATCTCACCAATTCGACCAATAATTTAACTGTTGACGTGACTTCACAAAG
CAAATACTTTTTTGAGTAAGTAGATTAAGCGAGTTAATGTATCTTAGGGC
CCGTTTACATGGATCTTCGGTACAGGGTGTACTGAGATTTTTCGGGACGG
TCTACGGTCTGAAGTCTCATATCGTTTACATGCCAGACCGGTCTGAGATT
TCAGTACGCCCTAACTTTCGGTTTGGTCAAAGCCACCGCACCGAAATTTC
AGTGCGGTCCAGAAAATGAATGTaaacgaaaataaatttcagtTCGGGTT
GGTCGTAGTTCTTCTTTTCAGGCCGATTATTTAAAAGAACTCAAAATAAA
TTTACTGGAACGGCATTTTCCAAAGTTTTCCAACCACGGctgagattttt
atttttgaaatctgtGTTAAACATTTGGCCTGCTAAAGTACTACGAACCA
AACCAACCCGAACCAAAATCGAAAATTCAGCCCGTACCGAAACACCTCAT
GTAAACAAGAGAATAACTCAGATCGTTCTGGATCTCAGACCGTTCTGGAT
CTCAGACCGTACCGACAATCCATGTAAGCGGGCCCTTAGTACACACTTAT
CAACCCTTAGCGGCACGAGGAGACTGGTAACGAAATAtacaaagaaaatt
cctttCGGTGATGTATTGAAACGATAAAGAAACGTCAATATAGTTAACCT
ATTCAATGCTAAAAGTTTATCCTCCACCGCAGAGACTCAAGAAAATGTCT
CTAAAGTTTTGGTAGGAATTAGCTAAGTTTGATTTAGTTGTATTTTAAAA
ATGCTGTGCCTCGAGAACACATCTGCCTTTCAAATTCATTTCCAGCCCTC
TAAAAAGCCAACTGCGCCGCTAAGATTTTCTAGGTGTTTTTAAGACAAGA
CGGCTAGAACAAACAATAGTTGTTTCCAGCATAAACCGAATAATCGTACT
TTTCAGCTGTGGCCGATCCACTTCCAACAGTCTGTCTGTTTGTGGTCGGC
CATCCTAGGTTTCTGTACCGATTCCAACTAAGTCATTTCAAATTGTTACG
GGATGGAGAACCAAAGTTTCAAAACCAccgaaatttttatttaaagccAG
AGGGAGGATGATTTACGAGTTAGCTAGAGTTTAATTTAGAAAGAAAGCTA
CGTCAGTACAGAAAACTCTTAGCATGATGTACATTTTTTACTgtcatttt
catttgatttaTAATAGACATGAAGTTTTGAACATCAGTGGTGCTGTGGA
CGATTACGGTGTCATCAATTGGAAAGTGACCCTATGTCTATTGCTAGCAT
GGACGCTTGTTTACTTTTGTATCTTCAAAGGAATTCGAACCACCGGGAAA
GTAAGTTTCCCATCTATCTAACTGTTACGGACAAggttttttttgagatt
ttcccAATTTCACCCAAAGATTGATTCATACTTCTCAAATTTtagaccct
tgcagtgcaagtGCAAGTTGACTCTTGCAGTTGAGTACAGTTAGTGCATT
TTAAAAATCCTGGAAATCTATCATTGATCGATTGTACTTGGCTTGAAAAT
TCCCTAAGACaaatttgtttgctttttttataaatctttgaTGCATTACT
ATCTTTTTAGTTCTTTTAGTCTTATCTCGTAGTCAACAAGATTTAAGCTG
ATACACGCGTCTTGGGATGAGTTAACATCGATgcaggcctcgttttcaaa
cagaacAATAACTTCAAATGACATTTGCACATTTGATATGTTTTCACAAA
ATACCGTAATGTTCGCAATAATGTCTTGAAAACGAGGCTCGCATTGATTT
TATACATTTCAAGAAGAACGTATTCATtctgattttttctttcttttatt
ttaaggTGGTGTATATTACAGCGACCTTACCTTACGTCATGCTTCTCATT
TTCTTCATACACGGCGTTCAATTACCTGGTGCAACAAAAGGCATAATGTA
TTACATCACACCTGTGTGGAGTATGTTGGCAAAGCCTCAGGTATGATTAC
ACATAAATCCAGATGAAACTAGTGCGATAACCTCACTAAAatccgggatt
tttcatctcgtttcttagtgagttctaTTTTGATGACTTTCGCGAAAAAA
TAGAAGccacaagtgctttgacgcaaattcgatatttttgctactgcagg
agcttcgacaGTTTAAAGTCACGTCaagaaatcgaatgtttagagcccga
aaacccgggcccccaaacattcgaaaaagtcgcaaagtgaaAGGGGACGT
CTGCTTTGGTAGATCATTTCAGTCATAATTCTATATGCCAGATAGctaaa
ttagtaaaaaaaagtttgcagAAAAAACGAACTCAAAATATTTAGTTTTG
ACTGACATATTCAGATTTTAGTGTTTTACAATTTCCTCTCTTTTACCTGA
TTTTTGACGTCACCTTTGTTcgtaatttataagaacagaaatcTTGTCTG
TAGTCTAAAGTACTGTATTTTAACAACTTTTGATAAGAACATTCAAACCt
ctaattttgatgatttttccaGTCCACAACTAtataaatatttcagtttt
CTATGAAGATAGGTAAGCTTTCATTGACAAAATGTTGGGAAAAAGATGTT
TTAACGACTTTAAATGCTCTTGCACATCTCTGACTTAcctaaaattttct
tataaaaatgccaGCTGCACAGAAAGAGGAGTTAATCTTGTTTACTTGAA
AGTACATAGAAAACATATAACATaagtaatgaatcaacggatcctgcact
aatgtacttcccagtacTACCCATAAGTAATACGTAGTATTACCcataag
taatacgcacttgatttcacacaTATAACATAAGCtacgtcataaatttt
gaaaaagagggattttttaaatggccatagaaagtgattgaaaaaaaatc
tcttgaagtgagatagctcattttaatctccctgtaataatttttccaaa
aattctaaaaaaacaatacctaaaatcagaccagacgtcccctttaaaaa
aattttagccTAAGAAAATTCTTAGCGATTCTTGAGCGAATTGTCTTTTA
GTTGATGGTTCTAACAGGTTGAATTATAGTTTCCCTTCAAGTCTTGTTTT
AAAGATATTGTGACATGCCTCGCGCgagcatcgctctcccagtgtcaTTC
GAGTGTCAcggtatacgccatggcttggcagctcgcATCTATCAGCGCCG
TGATAGGACCCATTCCGAATTCATTCGGGGGGGgggctcatatctatcta
tATCTATCTTGTTTTATAACGCGTtaaaaaatgggcttttccagaaaaaa
accgtatgccccctgttgaggaggtccatttccgttccaagggggtaatg
tttgatatgtggcggaattccatagggagatacaaaagtctgtcaaaaat
aactggaattccgtgggggtagccttttaaatcctactaaaattcagaat
tccagaggggtttaaacctgaaattgcctggaattccagggggtaacTGC
ATTATGATAGCCTCAAAATGATAGACCTCctttggaaaagcccaatagaa
gaaaagaaaaattaatcaaaacaatACGACTTTTCAACTCGAACCTCTAA
AAttcgaatgtctctttaactcgaacatgtTCCATGACCCCTTCAGTTAG
CAATGTGTCGTGAACCTACTCCTCGAAATGTCCTTAACTCGATCAAATTT
GTGTTCCTcttgcgtgttcgagttatggagaccaCTGTCAACGAAACAGT
CAACGCAACCAGAGCAGAGATTTACTCAGCTCTGGTTTAGACGGCGTCCA
TTTCGCCACTTTTTGCCTTCACTGACAATTGGAATAGACAGgacagaaag
tcggccgtctagaAAACTTGATCTAaaattttaactgccaactttctATC
CACTTTTTGCCTTCGCTgacaattagaatagacaggacAGAAAGTCGGCT
GTATAGAAAACTAGAGTTTAGAGTTTAATAATCAACTTTCTGCCAATTTT
TTGCTTTCACTGATAATTAGAACAGACAGGACAGAAAGTCGGCTGTCTAG
AAAACTAGATCTAAGAGTTTAACAGCCAGCCGACTTTCTGTCCACTTTTT
GCCTTCACTGACATTTAGAATAGACAGGACAGAAAGTTGGCTGGCTGTTA
AACTCTTAGATCTAGTTTTCTAGACAGCCGACTTTATGTCCACTTTTTGC
CTTCACTGACATTTAGAATAGACAAtacagaaagtcggccgtctagaAAA
CTGCAGCTTACCTGCTTTGTCTTCTAGGTTTGGGTAGATGCAGCCTCGCA
AGTTTTTTATTCGTTAACTTTGGGATTTGGTGTAATGCTAACGTTCGCTA
GTTACAACAAACAAGATAATAATCTTGTCAGGTAAGATGATCACTTTTTC
TTCTAAGGATAAGAACACAGATTTGGGGGTGGCACACATGTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016281XLOC_016281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028699-exon-sc0000698-1491911889:62515..62679TCONS_00028699-exon-sc0000698-1491911889:62515..62679Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1510915933:62515..62679TCONS_00028699-exon-sc0000698-1510915933:62515..62679Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1575043694:62515..62679TCONS_00028699-exon-sc0000698-1575043694:62515..62679Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1491911889:65377..65507TCONS_00028699-exon-sc0000698-1491911889:65377..65507Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1510915933:65377..65507TCONS_00028699-exon-sc0000698-1510915933:65377..65507Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1575043694:65377..65507TCONS_00028699-exon-sc0000698-1575043694:65377..65507Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1491911889:66763..66897TCONS_00028699-exon-sc0000698-1491911889:66763..66897Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1510915933:66763..66897TCONS_00028699-exon-sc0000698-1510915933:66763..66897Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1575043694:66763..66897TCONS_00028699-exon-sc0000698-1575043694:66763..66897Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1491911889:68375..68579TCONS_00028699-exon-sc0000698-1491911889:68375..68579Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1510915933:68375..68579TCONS_00028699-exon-sc0000698-1510915933:68375..68579Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1575043694:68375..68579TCONS_00028699-exon-sc0000698-1575043694:68375..68579Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1491911889:69732..69864TCONS_00028699-exon-sc0000698-1491911889:69732..69864Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1510915933:69732..69864TCONS_00028699-exon-sc0000698-1510915933:69732..69864Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1575043694:69732..69864TCONS_00028699-exon-sc0000698-1575043694:69732..69864Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1491911889:70370..70504TCONS_00028699-exon-sc0000698-1491911889:70370..70504Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1510915933:70370..70504TCONS_00028699-exon-sc0000698-1510915933:70370..70504Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1575043694:70370..70504TCONS_00028699-exon-sc0000698-1575043694:70370..70504Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1491911889:72792..72958TCONS_00028699-exon-sc0000698-1491911889:72792..72958Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1510915933:72792..72958TCONS_00028699-exon-sc0000698-1510915933:72792..72958Clytia hemisphaericaexon
TCONS_00028699-exon-sc0000698-1575043694:72792..72958TCONS_00028699-exon-sc0000698-1575043694:72792..72958Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000698supercontigsc0000698:62515..72958 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.71659	0.162425	0	0	0	0	0	0	0.551576	0.204537	0.290856	1.13798	0.713751	0.316496	2.17655	2.80506	1.50762	0	9.8704	9.47449	2.92383	8.3251	0	4.58973	1.73739	0	1.75158	0.000153403
Blast
[Close]
BLAST of TCONS_00028699 vs. Swiss-Prot (Human)
Match: SC6A4 (Sodium-dependent serotonin transporter OS=Homo sapiens GN=SLC6A4 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.528e-88
Identity = 139/313 (44.41%), Postives = 203/313 (64.86%), Query Frame = 2 
Query:   83 SVGQKNCIVHSFSALNMVLCKKKHAYSGASQGAPPREQWSRKIEFLFACVGFAVGYGNFWRFPFKCFKNGGGAFLIPFLICLVLAGIPLFMLELGLGQLTQAGPLKAWRKICPLMTGIGYGMVVVCFLVSIYYNVILAWSCFYFFNSFKSTLPWDGGMAS-TVGNLTN--STNNL--TVDVTSQSKYFFEHEVLNI--SGAVDDYGVINWKVTLCLLLAWTLVYFCIFKGIRTTGKVVYITATLPYVMLLIFFIHGVQLPGATKGIMYYITPVWSMLAKPQVWVDAASQVFYSLTLGFGVMLTFASYNKQDNN 1000
            S G  +   HS  A    L  + H      QG   RE W +K++FL + +G+AV  GN WRFP+ C++NGGGAFL+P+ I  +  GIPLF +EL LGQ  + G +  WRKICP+  GIGY + ++ F ++ YYN I+AW+ +Y  +SF   LPW     S   GN TN  S +N+  T+  TS ++ F+   VL I  S  + D G I+W++ LC++L +T++YF I+KG++T+GKVV++TAT PY++L +  + G  LPGA +G+++Y+ P W  L +  VW+DAA+Q+F+SL  GFGV+L FASYNK +NN
Sbjct:   52 SPGAGDDTRHSIPATTTTLVAELH------QGE--RETWGKKVDFLLSVIGYAVDLGNVWRFPYICYQNGGGAFLLPYTIMAIFGGIPLFYMELALGQYHRNGCISIWRKICPIFKGIGYAICIIAFYIASYYNTIMAWALYYLISSFTDQLPWTSCKNSWNTGNCTNYFSEDNITWTLHSTSPAEEFYTRHVLQIHRSKGLQDLGGISWQLALCIMLIFTVIYFSIWKGVKTSGKVVWVTATFPYIILSVLLVRGATLPGAWRGVLFYLKPNWQKLLETGVWIDAAAQIFFSLGPGFGVLLAFASYNKFNNN 356
The following BLAST results are available for this feature:
BLAST of TCONS_00028699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC6A41.528e-8844.41Sodium-dependent serotonin transporter OS=Homo sap... [more]
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